RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 AGAP9Q5VTM2 703 aa12.54□□□□□ -0.4
PTPRF-214ENST00000496043 ANKRD20A3Q5VUR7 823 aa12.54□□□□□ -0.4
PTPRF-214ENST00000496043 FAM151BQ6UXP7 276 aa12.54□□□□□ -0.4
PTPRF-214ENST00000496043 RANBP10Q6VN20 620 aa12.54□□□□□ -0.4
PTPRF-214ENST00000496043 RAD9BQ6WBX8 426 aa12.54□□□□□ -0.4
PTPRF-214ENST00000496043 VASH2Q86V25 355 aa12.54□□□□□ -0.4
PTPRF-214ENST00000496043 TRAPPC5Q8IUR0 188 aa12.54□□□□□ -0.4
PTPRF-214ENST00000496043 RBM12BQ8IXT5 1001 aaKnown RBP12.54□□□□□ -0.4
PTPRF-214ENST00000496043 ZNF398Q8TD17 642 aa12.54□□□□□ -0.4
PTPRF-214ENST00000496043 NKD1Q969G9 470 aa12.54□□□□□ -0.4
PTPRF-214ENST00000496043 TEFMQ96QE5 360 aaKnown RBP12.54□□□□□ -0.4
PTPRF-214ENST00000496043 ZPBPQ9BS86 351 aa12.54□□□□□ -0.4
PTPRF-214ENST00000496043 FICDQ9BVA6 458 aa12.54□□□□□ -0.4
PTPRF-214ENST00000496043 ZCCHC2Q9C0B9 1178 aaKnown RBP12.54□□□□□ -0.4
PTPRF-214ENST00000496043 LACRTQ9GZZ8 138 aa12.54□□□□□ -0.4
PTPRF-214ENST00000496043 GBA3Q9H227 469 aa12.54□□□□□ -0.4
PTPRF-214ENST00000496043 FBXO8Q9NRD0 319 aa12.54□□□□□ -0.4
PTPRF-214ENST00000496043 ZNF624Q9P2J8 865 aaPredicted RBP12.54□□□□□ -0.4
PTPRF-214ENST00000496043 AMFRQ9UKV5 643 aa12.54□□□□□ -0.4
PTPRF-214ENST00000496043 BPTFQ12830 3046 aa12.54□□□□□ -0.4
PTPRF-214ENST00000496043 AHCTF1Q8WYP5 2266 aa12.53□□□□□ -0.4
PTPRF-214ENST00000496043 MACROD2A1Z1Q3 448 aa12.53□□□□□ -0.4
PTPRF-214ENST00000496043 C5orf60A6NFR6 353 aa12.53□□□□□ -0.4
PTPRF-214ENST00000496043 PRR19A6NJB7 356 aa12.53□□□□□ -0.4
PTPRF-214ENST00000496043 KCNN4O15554 427 aa12.53□□□□□ -0.4
PTPRF-214ENST00000496043 ZNF189O75820 626 aaPredicted RBP12.53□□□□□ -0.4
PTPRF-214ENST00000496043 UBXN7O94888 489 aa12.53□□□□□ -0.4
PTPRF-214ENST00000496043 PYGMP11217 842 aa12.53□□□□□ -0.4
PTPRF-214ENST00000496043 LPOP22079 712 aaPredicted RBP12.53□□□□□ -0.4
PTPRF-214ENST00000496043 RPL10P27635 214 aaKnown RBP12.53□□□□□ -0.4
PTPRF-214ENST00000496043 HALP42357 657 aa12.53□□□□□ -0.4
PTPRF-214ENST00000496043 VAV2P52735 878 aa12.53□□□□□ -0.4
PTPRF-214ENST00000496043 SRSF6Q13247 344 aaKnown RBP12.53□□□□□ -0.4
PTPRF-214ENST00000496043 TAF1AQ15573 450 aaPredicted RBP12.53□□□□□ -0.4
PTPRF-214ENST00000496043 SEPT7Q16181 437 aaKnown RBP12.53□□□□□ -0.4
PTPRF-214ENST00000496043 ANKS6Q68DC2 871 aa12.53□□□□□ -0.4
PTPRF-214ENST00000496043 TMEM220Q6QAJ8 160 aa12.53□□□□□ -0.4
PTPRF-214ENST00000496043 CEACAM20Q6UY09 585 aa12.53□□□□□ -0.4
PTPRF-214ENST00000496043 C11orf96Q7Z7L8 435 aa12.53□□□□□ -0.4
PTPRF-214ENST00000496043 KIAA1328Q86T90 577 aa12.53□□□□□ -0.4
PTPRF-214ENST00000496043 AMZ2Q86W34 360 aa12.53□□□□□ -0.4
PTPRF-214ENST00000496043 TXLNBQ8N3L3 684 aa12.53□□□□□ -0.4
PTPRF-214ENST00000496043 IL22RA1Q8N6P7 574 aa12.53□□□□□ -0.4
PTPRF-214ENST00000496043 BMPERQ8N8U9 685 aa12.53□□□□□ -0.4
PTPRF-214ENST00000496043 RASGEF1AQ8N9B8 481 aa12.53□□□□□ -0.4
PTPRF-214ENST00000496043 JPH3Q8WXH2 748 aaPredicted RBP12.53□□□□□ -0.4
PTPRF-214ENST00000496043 LRRC45Q96CN5 670 aa12.53□□□□□ -0.4
PTPRF-214ENST00000496043 CXorf40BQ96DE9 158 aa12.53□□□□□ -0.4
PTPRF-214ENST00000496043 MED8Q96G25 268 aa12.53□□□□□ -0.4
PTPRF-214ENST00000496043 PPP1R2P1Q96PQ5 205 aa12.53□□□□□ -0.4
PTPRF-214ENST00000496043 BAG1Q99933 345 aaPredicted RBP12.53□□□□□ -0.4
PTPRF-214ENST00000496043 POT1Q9NUX5 634 aa12.53□□□□□ -0.4
PTPRF-214ENST00000496043 TRIM10Q9UDY6 481 aa12.53□□□□□ -0.4
PTPRF-214ENST00000496043 KLHL3Q9UH77 587 aa12.53□□□□□ -0.4
PTPRF-214ENST00000496043 REXO2Q9Y3B8 237 aaKnown RBP12.53□□□□□ -0.4
PTPRF-214ENST00000496043 FASNP49327 2511 aaKnown RBP12.53□□□□□ -0.4
PTPRF-214ENST00000496043 CRTAMO95727 393 aa12.52□□□□□ -0.41
PTPRF-214ENST00000496043 C9P02748 559 aa12.52□□□□□ -0.41
PTPRF-214ENST00000496043 ITGB2P05107 769 aa12.52□□□□□ -0.41
PTPRF-214ENST00000496043 PTMAP06454 111 aaKnown RBP12.52□□□□□ -0.41
PTPRF-214ENST00000496043 BRAFP15056 766 aa12.52□□□□□ -0.41
PTPRF-214ENST00000496043 TYRP1P17643 537 aa12.52□□□□□ -0.41
PTPRF-214ENST00000496043 MSH3P20585 1137 aa12.52□□□□□ -0.41
PTPRF-214ENST00000496043 MAP4P27816 1152 aaKnown RBP12.52□□□□□ -0.41
PTPRF-214ENST00000496043 ADRA1AP35348 466 aa12.52□□□□□ -0.41
PTPRF-214ENST00000496043 ARSDP51689 593 aa12.52□□□□□ -0.41
PTPRF-214ENST00000496043 DRG2P55039 364 aaKnown RBP12.52□□□□□ -0.41
PTPRF-214ENST00000496043 PDE1BQ01064 536 aa12.52□□□□□ -0.41
PTPRF-214ENST00000496043 KIF5AQ12840 1032 aa12.52□□□□□ -0.41
PTPRF-214ENST00000496043 PTPRCAPQ14761 206 aa12.52□□□□□ -0.41
PTPRF-214ENST00000496043 CLCA4Q14CN2 919 aa12.52□□□□□ -0.41
PTPRF-214ENST00000496043 GPRC6AQ5T6X5 926 aa12.52□□□□□ -0.41
PTPRF-214ENST00000496043 PEX26Q7Z412 305 aa12.52□□□□□ -0.41
PTPRF-214ENST00000496043 CACNA2D3Q8IZS8 1091 aa12.52□□□□□ -0.41
PTPRF-214ENST00000496043 SYCE1Q8N0S2 351 aa12.52□□□□□ -0.41
PTPRF-214ENST00000496043 UBL4BQ8N7F7 174 aa12.52□□□□□ -0.41
PTPRF-214ENST00000496043 LRRC57Q8N9N7 239 aa12.52□□□□□ -0.41
PTPRF-214ENST00000496043 TTC13Q8NBP0 860 aa12.52□□□□□ -0.41
PTPRF-214ENST00000496043 ACRBPQ8NEB7 543 aa12.52□□□□□ -0.41
PTPRF-214ENST00000496043 DDHD1Q8NEL9 900 aa12.52□□□□□ -0.41
PTPRF-214ENST00000496043 PMEPA1Q969W9 287 aa12.52□□□□□ -0.41
PTPRF-214ENST00000496043 ZNF514Q96K75 400 aaPredicted RBP12.52□□□□□ -0.41
PTPRF-214ENST00000496043 C9orf72Q96LT7 481 aa12.52□□□□□ -0.41
PTPRF-214ENST00000496043 ARHGAP9Q9BRR9 750 aa12.52□□□□□ -0.41
PTPRF-214ENST00000496043 SPRY4Q9C004 299 aa12.52□□□□□ -0.41
PTPRF-214ENST00000496043 SLC40A1Q9NP59 571 aa12.52□□□□□ -0.41
PTPRF-214ENST00000496043 OGFRQ9NZT2 677 aa12.52□□□□□ -0.41
PTPRF-214ENST00000496043 PCDHGA4Q9Y5G9 962 aa12.52□□□□□ -0.41
PTPRF-214ENST00000496043 ARL5AQ9Y689 179 aa12.52□□□□□ -0.41
PTPRF-214ENST00000496043 SLC30A1Q9Y6M5 507 aa12.52□□□□□ -0.41
PTPRF-214ENST00000496043 SCN8AQ9UQD0 1980 aa12.51□□□□□ -0.41
PTPRF-214ENST00000496043 GRID2IPA4D2P6 1211 aa12.51□□□□□ -0.41
PTPRF-214ENST00000496043 GOLGA6L9A6NEM1 432 aa12.51□□□□□ -0.41
PTPRF-214ENST00000496043 OR52A4PA6NMU1 304 aa12.51□□□□□ -0.41
PTPRF-214ENST00000496043 MIF4GDA9UHW6 222 aaKnown RBP12.51□□□□□ -0.41
PTPRF-214ENST00000496043 POLR1CO15160 346 aaPredicted RBP12.51□□□□□ -0.41
PTPRF-214ENST00000496043 TOX3O15405 576 aaPredicted RBP12.51□□□□□ -0.41
PTPRF-214ENST00000496043 CAPN5O15484 640 aaPredicted RBP12.51□□□□□ -0.41
PTPRF-214ENST00000496043 RAD1O60671 282 aa12.51□□□□□ -0.41
PTPRF-214ENST00000496043 ANKRD34CP0C6C1 535 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms