RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-208	ENST00000494728	CACNA2D3	Q8IZS8	1091 aa		11.45	□□□□□ -0.58
VTI1A-208	ENST00000494728	RASGEF1A	Q8N9B8	481 aa		11.45	□□□□□ -0.58
VTI1A-208	ENST00000494728	BLOC1S5	Q8TDH9	187 aa		11.45	□□□□□ -0.58
VTI1A-208	ENST00000494728	P3H4	Q92791	437 aa		11.45	□□□□□ -0.58
VTI1A-208	ENST00000494728	FCRL5	Q96RD9	977 aa		11.45	□□□□□ -0.58
VTI1A-208	ENST00000494728	STN1	Q9H668	368 aa	Known RBP	11.45	□□□□□ -0.58
VTI1A-208	ENST00000494728	UGT1A7	Q9HAW7	530 aa		11.45	□□□□□ -0.58
VTI1A-208	ENST00000494728	UGT1A10	Q9HAW8	530 aa		11.45	□□□□□ -0.58
VTI1A-208	ENST00000494728	UGT1A8	Q9HAW9	530 aa		11.45	□□□□□ -0.58
VTI1A-208	ENST00000494728	IL17C	Q9P0M4	197 aa		11.45	□□□□□ -0.58
VTI1A-208	ENST00000494728	PCDHB11	Q9Y5F2	797 aa		11.45	□□□□□ -0.58
VTI1A-208	ENST00000494728	DUSP10	Q9Y6W6	482 aa		11.45	□□□□□ -0.58
VTI1A-208	ENST00000494728	DOPEY2	Q9Y3R5	2298 aa		11.45	□□□□□ -0.58
VTI1A-208	ENST00000494728	NBPF19	A0A087WUL8	3843 aa		11.45	□□□□□ -0.58
VTI1A-208	ENST00000494728		A0A0U1RQJ8	604 aa		11.44	□□□□□ -0.58
VTI1A-208	ENST00000494728	GPR89A	B7ZAQ6	455 aa		11.44	□□□□□ -0.58
VTI1A-208	ENST00000494728		J3QKU1	62 aa		11.44	□□□□□ -0.58
VTI1A-208	ENST00000494728	KMO	O15229	486 aa		11.44	□□□□□ -0.58
VTI1A-208	ENST00000494728	VEGFD	O43915	354 aa		11.44	□□□□□ -0.58
VTI1A-208	ENST00000494728	CDK14	O94921	469 aa		11.44	□□□□□ -0.58
VTI1A-208	ENST00000494728	ZRANB2	O95218	330 aa	Known RBP eCLIP	11.44	□□□□□ -0.58
VTI1A-208	ENST00000494728	DLGAP3	O95886	979 aa		11.44	□□□□□ -0.58
VTI1A-208	ENST00000494728	AGT	P01019	485 aa		11.44	□□□□□ -0.58
VTI1A-208	ENST00000494728	ANKRD34C	P0C6C1	535 aa		11.44	□□□□□ -0.58
VTI1A-208	ENST00000494728	GPR89B	P0CG08	455 aa		11.44	□□□□□ -0.58
VTI1A-208	ENST00000494728	RBL1	P28749	1068 aa		11.44	□□□□□ -0.58
VTI1A-208	ENST00000494728	CTNNA1	P35221	906 aa	Known RBP	11.44	□□□□□ -0.58
VTI1A-208	ENST00000494728	SPAM1	P38567	509 aa		11.44	□□□□□ -0.58
VTI1A-208	ENST00000494728	CAPZB	P47756	277 aa		11.44	□□□□□ -0.58
VTI1A-208	ENST00000494728	RAB15	P59190	212 aa		11.44	□□□□□ -0.58
VTI1A-208	ENST00000494728	TMEM115	Q12893	351 aa	Predicted RBP	11.44	□□□□□ -0.58
VTI1A-208	ENST00000494728	PPP2R5E	Q16537	467 aa		11.44	□□□□□ -0.58
VTI1A-208	ENST00000494728	DCAF12	Q5T6F0	453 aa		11.44	□□□□□ -0.58
VTI1A-208	ENST00000494728	GPRC6A	Q5T6X5	926 aa		11.44	□□□□□ -0.58
VTI1A-208	ENST00000494728	ATP1A1-AS1	Q5TC04	95 aa		11.44	□□□□□ -0.58
VTI1A-208	ENST00000494728	ABRAXAS1	Q6UWZ7	409 aa		11.44	□□□□□ -0.58
VTI1A-208	ENST00000494728	GLT6D1	Q7Z4J2	308 aa		11.44	□□□□□ -0.58
VTI1A-208	ENST00000494728	IL22RA1	Q8N6P7	574 aa		11.44	□□□□□ -0.58
VTI1A-208	ENST00000494728	BEND7	Q8N7W2	519 aa	Predicted RBP	11.44	□□□□□ -0.58
VTI1A-208	ENST00000494728	CCDC112	Q8NEF3	446 aa		11.44	□□□□□ -0.58
VTI1A-208	ENST00000494728	ALG3	Q92685	438 aa		11.44	□□□□□ -0.58
VTI1A-208	ENST00000494728	C9orf72	Q96LT7	481 aa		11.44	□□□□□ -0.58
VTI1A-208	ENST00000494728	TGM7	Q96PF1	710 aa		11.44	□□□□□ -0.58
VTI1A-208	ENST00000494728	APOL2	Q9BQE5	337 aa		11.44	□□□□□ -0.58
VTI1A-208	ENST00000494728	FICD	Q9BVA6	458 aa		11.44	□□□□□ -0.58
VTI1A-208	ENST00000494728	ASPSCR1	Q9BZE9	553 aa		11.44	□□□□□ -0.58
VTI1A-208	ENST00000494728	TRIM5	Q9C035	493 aa		11.44	□□□□□ -0.58
VTI1A-208	ENST00000494728	TRIM4	Q9C037	500 aa		11.44	□□□□□ -0.58
VTI1A-208	ENST00000494728	GBA3	Q9H227	469 aa		11.44	□□□□□ -0.58
VTI1A-208	ENST00000494728	RAD18	Q9NS91	495 aa		11.44	□□□□□ -0.58
VTI1A-208	ENST00000494728	STARD5	Q9NSY2	213 aa		11.44	□□□□□ -0.58
VTI1A-208	ENST00000494728	IL17B	Q9UHF5	180 aa		11.44	□□□□□ -0.58
VTI1A-208	ENST00000494728	KCTD3	Q9Y597	815 aa		11.44	□□□□□ -0.58
VTI1A-208	ENST00000494728	ARL5A	Q9Y689	179 aa		11.44	□□□□□ -0.58
VTI1A-208	ENST00000494728	TNRC6A	Q8NDV7	1962 aa	Known RBP	11.44	□□□□□ -0.58
VTI1A-208	ENST00000494728	MED13	Q9UHV7	2174 aa		11.44	□□□□□ -0.58
VTI1A-208	ENST00000494728	GLYATL1P3	A0A0U1RQE8	302 aa		11.43	□□□□□ -0.58
VTI1A-208	ENST00000494728	OR2AG2	A6NM03	316 aa		11.43	□□□□□ -0.58
VTI1A-208	ENST00000494728	OR5K4	A6NMS3	321 aa		11.43	□□□□□ -0.58
VTI1A-208	ENST00000494728	APOC4-APOC2	K7ER74	178 aa		11.43	□□□□□ -0.58
VTI1A-208	ENST00000494728	PJA2	O43164	708 aa		11.43	□□□□□ -0.58
VTI1A-208	ENST00000494728	SLC28A2	O43868	658 aa		11.43	□□□□□ -0.58
VTI1A-208	ENST00000494728	STK17B	O94768	372 aa		11.43	□□□□□ -0.58
VTI1A-208	ENST00000494728	UBXN7	O94888	489 aa		11.43	□□□□□ -0.58
VTI1A-208	ENST00000494728	VIP	P01282	170 aa		11.43	□□□□□ -0.58
VTI1A-208	ENST00000494728	APOC2	P02655	101 aa		11.43	□□□□□ -0.58
VTI1A-208	ENST00000494728	SLC2A4	P14672	509 aa		11.43	□□□□□ -0.58
VTI1A-208	ENST00000494728	HLA-DPA1	P20036	260 aa		11.43	□□□□□ -0.58
VTI1A-208	ENST00000494728	FECH	P22830	423 aa		11.43	□□□□□ -0.58
VTI1A-208	ENST00000494728	F8A1	P23610	371 aa		11.43	□□□□□ -0.58
VTI1A-208	ENST00000494728	PSMB4	P28070	264 aa		11.43	□□□□□ -0.58
VTI1A-208	ENST00000494728	ADRA1A	P35348	466 aa		11.43	□□□□□ -0.58
VTI1A-208	ENST00000494728	SEPHS1	P49903	392 aa		11.43	□□□□□ -0.58
VTI1A-208	ENST00000494728	ATP1A2	P50993	1020 aa		11.43	□□□□□ -0.58
VTI1A-208	ENST00000494728	OTUD4	Q01804	1114 aa	Known RBP	11.43	□□□□□ -0.58
VTI1A-208	ENST00000494728	MPP3	Q13368	585 aa		11.43	□□□□□ -0.58
VTI1A-208	ENST00000494728	NFE2L1	Q14494	772 aa		11.43	□□□□□ -0.58
VTI1A-208	ENST00000494728	AGAP9	Q5VTM2	703 aa		11.43	□□□□□ -0.58
VTI1A-208	ENST00000494728	DUS1L	Q6P1R4	473 aa	Known RBP	11.43	□□□□□ -0.58
VTI1A-208	ENST00000494728	RAD9B	Q6WBX8	426 aa		11.43	□□□□□ -0.58
VTI1A-208	ENST00000494728	PID1	Q7Z2X4	250 aa		11.43	□□□□□ -0.58
VTI1A-208	ENST00000494728	DAAM2	Q86T65	1068 aa		11.43	□□□□□ -0.58
VTI1A-208	ENST00000494728	ACRBP	Q8NEB7	543 aa		11.43	□□□□□ -0.58
VTI1A-208	ENST00000494728	DDHD1	Q8NEL9	900 aa		11.43	□□□□□ -0.58
VTI1A-208	ENST00000494728	GDAP1	Q8TB36	358 aa		11.43	□□□□□ -0.58
VTI1A-208	ENST00000494728	ACTL9	Q8TC94	416 aa		11.43	□□□□□ -0.58
VTI1A-208	ENST00000494728	SH3KBP1	Q96B97	665 aa		11.43	□□□□□ -0.58
VTI1A-208	ENST00000494728	RBM41	Q96IZ5	413 aa	Known RBP	11.43	□□□□□ -0.58
VTI1A-208	ENST00000494728	LDHAL6B	Q9BYZ2	381 aa	Predicted RBP	11.43	□□□□□ -0.58
VTI1A-208	ENST00000494728	LACRT	Q9GZZ8	138 aa		11.43	□□□□□ -0.58
VTI1A-208	ENST00000494728	TRABD	Q9H4I3	376 aa		11.43	□□□□□ -0.58
VTI1A-208	ENST00000494728	UCK1	Q9HA47	277 aa		11.43	□□□□□ -0.58
VTI1A-208	ENST00000494728	SLC40A1	Q9NP59	571 aa		11.43	□□□□□ -0.58
VTI1A-208	ENST00000494728	FBXO8	Q9NRD0	319 aa		11.43	□□□□□ -0.58
VTI1A-208	ENST00000494728	RSPH14	Q9UHP6	348 aa		11.43	□□□□□ -0.58
VTI1A-208	ENST00000494728	PSMD13	Q9UNM6	376 aa		11.43	□□□□□ -0.58
VTI1A-208	ENST00000494728	TMEM184B	Q9Y519	407 aa	Predicted RBP	11.43	□□□□□ -0.58
VTI1A-208	ENST00000494728	MRPS18B	Q9Y676	258 aa	Known RBP	11.43	□□□□□ -0.58
VTI1A-208	ENST00000494728	RP1L1	Q8IWN7	2480 aa	Predicted RBP	11.43	□□□□□ -0.58
VTI1A-208	ENST00000494728	USP9Y	O00507	2555 aa	Predicted RBP	11.42	□□□□□ -0.58

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