RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 RGS9BPQ6ZS82 235 aa12.49□□□□□ -0.41
VPS52-220ENST00000493674 TBC1D1Q86TI0 1168 aaPredicted RBP12.49□□□□□ -0.41
VPS52-220ENST00000493674 CKAP2Q8WWK9 683 aa12.49□□□□□ -0.41
VPS52-220ENST00000493674 NXNL1Q96CM4 212 aa12.49□□□□□ -0.41
VPS52-220ENST00000493674 HIC2Q96JB3 615 aa12.49□□□□□ -0.41
VPS52-220ENST00000493674 HHIPQ96QV1 700 aa12.49□□□□□ -0.41
VPS52-220ENST00000493674 LRFN3Q9BTN0 628 aa12.49□□□□□ -0.41
VPS52-220ENST00000493674 CAPS2Q9BXY5 557 aa12.49□□□□□ -0.41
VPS52-220ENST00000493674 SLC17A9Q9BYT1 436 aa12.49□□□□□ -0.41
VPS52-220ENST00000493674 DERL2Q9GZP9 239 aa12.49□□□□□ -0.41
VPS52-220ENST00000493674 IQCGQ9H095 443 aaKnown RBP12.49□□□□□ -0.41
VPS52-220ENST00000493674 BTBD1Q9H0C5 482 aa12.49□□□□□ -0.41
VPS52-220ENST00000493674 SYTL2Q9HCH5 934 aa12.49□□□□□ -0.41
VPS52-220ENST00000493674 MBNL1Q9NR56 388 aaKnown RBP12.49□□□□□ -0.41
VPS52-220ENST00000493674 TRMT6Q9UJA5 497 aaKnown RBP12.49□□□□□ -0.41
VPS52-220ENST00000493674 PI4KAP42356 2102 aa12.49□□□□□ -0.41
VPS52-220ENST00000493674 CCDC189A1A4V9 331 aa12.48□□□□□ -0.41
VPS52-220ENST00000493674 LRRC72A6NJI9 287 aa12.48□□□□□ -0.41
VPS52-220ENST00000493674 IQCF5A8MTL0 148 aa12.48□□□□□ -0.41
VPS52-220ENST00000493674 EIF3FO00303 357 aaPredicted RBP12.48□□□□□ -0.41
VPS52-220ENST00000493674 RAD51BO15315 384 aa12.48□□□□□ -0.41
VPS52-220ENST00000493674 BIRC5O15392 142 aa12.48□□□□□ -0.41
VPS52-220ENST00000493674 DNAJC6O75061 913 aa12.48□□□□□ -0.41
VPS52-220ENST00000493674 SLC25A14O95258 325 aaPredicted RBP12.48□□□□□ -0.41
VPS52-220ENST00000493674 APBB3O95704 486 aa12.48□□□□□ -0.41
VPS52-220ENST00000493674 SEMA4FO95754 770 aa12.48□□□□□ -0.41
VPS52-220ENST00000493674 APOA4P06727 396 aa12.48□□□□□ -0.41
VPS52-220ENST00000493674 OR56A5P0C7T3 313 aa12.48□□□□□ -0.41
VPS52-220ENST00000493674 CCDC166P0CW27 439 aa12.48□□□□□ -0.41
VPS52-220ENST00000493674 RALBP11234 206 aa12.48□□□□□ -0.41
VPS52-220ENST00000493674 CD1DP15813 335 aa12.48□□□□□ -0.41
VPS52-220ENST00000493674 MSH3P20585 1137 aa12.48□□□□□ -0.41
VPS52-220ENST00000493674 OXTRP30559 389 aa12.48□□□□□ -0.41
VPS52-220ENST00000493674 AKT1P31749 480 aa12.48□□□□□ -0.41
VPS52-220ENST00000493674 CCR5P51681 352 aa12.48□□□□□ -0.41
VPS52-220ENST00000493674 CTSCP53634 463 aa12.48□□□□□ -0.41
VPS52-220ENST00000493674 CDK3Q00526 305 aa12.48□□□□□ -0.41
VPS52-220ENST00000493674 MTAPQ13126 283 aa12.48□□□□□ -0.41
VPS52-220ENST00000493674 PCLAFQ15004 111 aa12.48□□□□□ -0.41
VPS52-220ENST00000493674 PTRHD1Q6GMV3 140 aaKnown RBP12.48□□□□□ -0.41
VPS52-220ENST00000493674 ANO7Q6IWH7 933 aa12.48□□□□□ -0.41
VPS52-220ENST00000493674 LRRC8EQ6NSJ5 796 aa12.48□□□□□ -0.41
VPS52-220ENST00000493674 UGT3A1Q6NUS8 523 aa12.48□□□□□ -0.41
VPS52-220ENST00000493674 C16orf46Q6P387 395 aa12.48□□□□□ -0.41
VPS52-220ENST00000493674 ADGRG6Q86SQ4 1221 aa12.48□□□□□ -0.41
VPS52-220ENST00000493674 FAM124AQ86V42 546 aa12.48□□□□□ -0.41
VPS52-220ENST00000493674 CAMKK1Q8N5S9 505 aa12.48□□□□□ -0.41
VPS52-220ENST00000493674 RASGEF1AQ8N9B8 481 aa12.48□□□□□ -0.41
VPS52-220ENST00000493674 SIDT2Q8NBJ9 832 aaKnown RBP12.48□□□□□ -0.41
VPS52-220ENST00000493674 ARMC2Q8NEN0 867 aa12.48□□□□□ -0.41
VPS52-220ENST00000493674 RDH11Q8TC12 318 aa12.48□□□□□ -0.41
VPS52-220ENST00000493674 MGARPQ8TDB4 240 aa12.48□□□□□ -0.41
VPS52-220ENST00000493674 INPP5DQ92835 1189 aa12.48□□□□□ -0.41
VPS52-220ENST00000493674 PANX3Q96QZ0 392 aa12.48□□□□□ -0.41
VPS52-220ENST00000493674 C1QTNF7Q9BXJ2 289 aa12.48□□□□□ -0.41
VPS52-220ENST00000493674 KCNH6Q9H252 994 aa12.48□□□□□ -0.41
VPS52-220ENST00000493674 NMRAL1Q9HBL8 299 aa12.48□□□□□ -0.41
VPS52-220ENST00000493674 TRIM39Q9HCM9 518 aa12.48□□□□□ -0.41
VPS52-220ENST00000493674 MLXIPLQ9NP71 852 aa12.48□□□□□ -0.41
VPS52-220ENST00000493674 WSB2Q9NYS7 404 aaPredicted RBP12.48□□□□□ -0.41
VPS52-220ENST00000493674 SIRPGQ9P1W8 387 aa12.48□□□□□ -0.41
VPS52-220ENST00000493674 SIT1Q9Y3P8 196 aa12.48□□□□□ -0.41
VPS52-220ENST00000493674 CACNA1EQ15878 2313 aa12.47□□□□□ -0.41
VPS52-220ENST00000493674 TBC1D3DA0A087WVF3 549 aa12.47□□□□□ -0.41
VPS52-220ENST00000493674 TBC1D3IA0A087WXS9 549 aa12.47□□□□□ -0.41
VPS52-220ENST00000493674 TBC1D3EA0A087X179 549 aa12.47□□□□□ -0.41
VPS52-220ENST00000493674 TBC1D3KA0A087X1G2 549 aa12.47□□□□□ -0.41
VPS52-220ENST00000493674 TBC1D3FA6NER0 549 aaPredicted RBP12.47□□□□□ -0.41
VPS52-220ENST00000493674 TBC1D3LB9A6J9 549 aa12.47□□□□□ -0.41
VPS52-220ENST00000493674 E5RI56 91 aa12.47□□□□□ -0.41
VPS52-220ENST00000493674 G3V2L1 256 aa12.47□□□□□ -0.41
VPS52-220ENST00000493674 K7ESF4 209 aa12.47□□□□□ -0.41
VPS52-220ENST00000493674 CHUKO15111 745 aa12.47□□□□□ -0.41
VPS52-220ENST00000493674 INPP4BO15327 924 aa12.47□□□□□ -0.41
VPS52-220ENST00000493674 VEGFDO43915 354 aa12.47□□□□□ -0.41
VPS52-220ENST00000493674 MAGEC1O60732 1142 aa12.47□□□□□ -0.41
VPS52-220ENST00000493674 ZNF217O75362 1048 aa12.47□□□□□ -0.41
VPS52-220ENST00000493674 MTX2O75431 263 aa12.47□□□□□ -0.41
VPS52-220ENST00000493674 PAK4O96013 591 aaPredicted RBP12.47□□□□□ -0.41
VPS52-220ENST00000493674 IGHV4-34P06331 123 aa12.47□□□□□ -0.41
VPS52-220ENST00000493674 BPGMP07738 259 aa12.47□□□□□ -0.41
VPS52-220ENST00000493674 HOXC4P09017 264 aaPredicted RBP12.47□□□□□ -0.41
VPS52-220ENST00000493674 TBC1D3HP0C7X1 549 aa12.47□□□□□ -0.41
VPS52-220ENST00000493674 AOC1P19801 751 aa12.47□□□□□ -0.41
VPS52-220ENST00000493674 AOAHP28039 575 aa12.47□□□□□ -0.41
VPS52-220ENST00000493674 LSP1P33241 339 aa12.47□□□□□ -0.41
VPS52-220ENST00000493674 KPNA2P52292 529 aaKnown RBP12.47□□□□□ -0.41
VPS52-220ENST00000493674 PPARDQ03181 441 aa12.47□□□□□ -0.41
VPS52-220ENST00000493674 TMEM115Q12893 351 aaPredicted RBP12.47□□□□□ -0.41
VPS52-220ENST00000493674 CSHL1Q14406 222 aa12.47□□□□□ -0.41
VPS52-220ENST00000493674 ACAP2Q15057 778 aa12.47□□□□□ -0.41
VPS52-220ENST00000493674 PDK4Q16654 411 aa12.47□□□□□ -0.41
VPS52-220ENST00000493674 FAM83EQ2M2I3 478 aa12.47□□□□□ -0.41
VPS52-220ENST00000493674 ZNF648Q5T619 568 aaPredicted RBP12.47□□□□□ -0.41
VPS52-220ENST00000493674 AGAP9Q5VTM2 703 aa12.47□□□□□ -0.41
VPS52-220ENST00000493674 HHATQ5VTY9 493 aa12.47□□□□□ -0.41
VPS52-220ENST00000493674 TBC1D3GQ6DHY5 549 aa12.47□□□□□ -0.41
VPS52-220ENST00000493674 TBC1D3CQ6IPX1 549 aa12.47□□□□□ -0.41
VPS52-220ENST00000493674 XKR5Q6UX68 686 aa12.47□□□□□ -0.41
VPS52-220ENST00000493674 ISCA2Q86U28 154 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms