RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 CHRNA4P43681 627 aa11.59□□□□□ -0.55
HDAC4-210ENST00000493582 HTR3AP46098 478 aa11.59□□□□□ -0.55
HDAC4-210ENST00000493582 ZFP36L2P47974 494 aaKnown RBP11.59□□□□□ -0.55
HDAC4-210ENST00000493582 CLK1P49759 484 aaKnown RBP11.59□□□□□ -0.55
HDAC4-210ENST00000493582 TKTL1P51854 596 aa11.59□□□□□ -0.55
HDAC4-210ENST00000493582 SNX16P57768 344 aa11.59□□□□□ -0.55
HDAC4-210ENST00000493582 RBP5P82980 135 aa11.59□□□□□ -0.55
HDAC4-210ENST00000493582 TRAF3Q13114 568 aa11.59□□□□□ -0.55
HDAC4-210ENST00000493582 SIM2Q14190 667 aaPredicted RBP11.59□□□□□ -0.55
HDAC4-210ENST00000493582 SMU1Q2TAY7 513 aa11.59□□□□□ -0.55
HDAC4-210ENST00000493582 SYT6Q5T7P8 510 aaPredicted RBP11.59□□□□□ -0.55
HDAC4-210ENST00000493582 ZNF691Q5VV52 312 aa11.59□□□□□ -0.55
HDAC4-210ENST00000493582 PIM3Q86V86 326 aa11.59□□□□□ -0.55
HDAC4-210ENST00000493582 FAM20CQ8IXL6 584 aa11.59□□□□□ -0.55
HDAC4-210ENST00000493582 BCL7BQ9BQE9 202 aa11.59□□□□□ -0.55
HDAC4-210ENST00000493582 TRMOQ9BU70 441 aa11.59□□□□□ -0.55
HDAC4-210ENST00000493582 LRRC3Q9BY71 257 aa11.59□□□□□ -0.55
HDAC4-210ENST00000493582 PIGVQ9NUD9 493 aa11.59□□□□□ -0.55
HDAC4-210ENST00000493582 GIMAP4Q9NUV9 329 aa11.59□□□□□ -0.55
HDAC4-210ENST00000493582 SNX10Q9Y5X0 201 aa11.59□□□□□ -0.55
HDAC4-210ENST00000493582 MRPL42Q9Y6G3 142 aaKnown RBP11.59□□□□□ -0.55
HDAC4-210ENST00000493582 MAU2Q9Y6X3 613 aa11.59□□□□□ -0.55
HDAC4-210ENST00000493582 ANK1P16157 1881 aa11.59□□□□□ -0.55
HDAC4-210ENST00000493582 SHROOM3Q8TF72 1996 aa11.59□□□□□ -0.55
HDAC4-210ENST00000493582 SAGE2PA6NJ88 616 aa11.59□□□□□ -0.55
HDAC4-210ENST00000493582 HPRP00739 348 aa11.59□□□□□ -0.55
HDAC4-210ENST00000493582 LCKP06239 509 aa11.59□□□□□ -0.55
HDAC4-210ENST00000493582 CCDC159P0C7I6 412 aa11.59□□□□□ -0.55
HDAC4-210ENST00000493582 CYP2C18P33260 490 aa11.59□□□□□ -0.55
HDAC4-210ENST00000493582 IL1RL1Q01638 556 aa11.59□□□□□ -0.55
HDAC4-210ENST00000493582 RCAN2Q14206 197 aa11.59□□□□□ -0.55
HDAC4-210ENST00000493582 B3GNT8Q7Z7M8 397 aa11.59□□□□□ -0.55
HDAC4-210ENST00000493582 PTGR2Q8N8N7 351 aaPredicted RBP11.59□□□□□ -0.55
HDAC4-210ENST00000493582 AFG1LQ8WV93 481 aa11.59□□□□□ -0.55
HDAC4-210ENST00000493582 PTERQ96BW5 349 aa11.59□□□□□ -0.55
HDAC4-210ENST00000493582 PYCR2Q96C36 320 aa11.59□□□□□ -0.55
HDAC4-210ENST00000493582 C12orf42Q96LP6 360 aa11.59□□□□□ -0.55
HDAC4-210ENST00000493582 FBXL12Q9NXK8 326 aa11.59□□□□□ -0.55
HDAC4-210ENST00000493582 ZNF646O15015 1829 aaPredicted RBP11.58□□□□□ -0.56
HDAC4-210ENST00000493582 EP400Q96L91 3159 aa11.58□□□□□ -0.56
HDAC4-210ENST00000493582 IGKV6D-21A0A0A0MT36 114 aa11.58□□□□□ -0.56
HDAC4-210ENST00000493582 DNTTP04053 509 aa11.58□□□□□ -0.56
HDAC4-210ENST00000493582 PRKACBP22694 351 aa11.58□□□□□ -0.56
HDAC4-210ENST00000493582 CLCN3P51790 818 aa11.58□□□□□ -0.56
HDAC4-210ENST00000493582 HERVK_113P63132 956 aa11.58□□□□□ -0.56
HDAC4-210ENST00000493582 EPS8Q12929 822 aa11.58□□□□□ -0.56
HDAC4-210ENST00000493582 PFKFB4Q16877 469 aa11.58□□□□□ -0.56
HDAC4-210ENST00000493582 TMEM199Q8N511 208 aa11.58□□□□□ -0.56
HDAC4-210ENST00000493582 NATD1Q8N6N6 113 aa11.58□□□□□ -0.56
HDAC4-210ENST00000493582 SPERTQ8NA61 448 aa11.58□□□□□ -0.56
HDAC4-210ENST00000493582 PJA1Q8NG27 643 aa11.58□□□□□ -0.56
HDAC4-210ENST00000493582 ERVK-6Q9BXR3 956 aa11.58□□□□□ -0.56
HDAC4-210ENST00000493582 MRM3Q9HC36 420 aaKnown RBP11.58□□□□□ -0.56
HDAC4-210ENST00000493582 CCDC177Q9NQR7 707 aaPredicted RBP11.58□□□□□ -0.56
HDAC4-210ENST00000493582 TNFSF13BQ9Y275 285 aa11.58□□□□□ -0.56
HDAC4-210ENST00000493582 PCDHB14Q9Y5E9 798 aa11.58□□□□□ -0.56
HDAC4-210ENST00000493582 UBR3Q6ZT12 1888 aa11.58□□□□□ -0.56
HDAC4-210ENST00000493582 PCM1Q15154 2024 aa11.58□□□□□ -0.56
HDAC4-210ENST00000493582 ERVH48-1M5A8F1 160 aa11.58□□□□□ -0.56
HDAC4-210ENST00000493582 ZW10O43264 779 aa11.58□□□□□ -0.56
HDAC4-210ENST00000493582 TULP3O75386 442 aa11.58□□□□□ -0.56
HDAC4-210ENST00000493582 CYBBP04839 570 aa11.58□□□□□ -0.56
HDAC4-210ENST00000493582 ANXA6P08133 673 aa11.58□□□□□ -0.56
HDAC4-210ENST00000493582 NDUFV1P49821 464 aa11.58□□□□□ -0.56
HDAC4-210ENST00000493582 TPI1P60174 286 aa11.58□□□□□ -0.56
HDAC4-210ENST00000493582 EMX2Q04743 252 aa11.58□□□□□ -0.56
HDAC4-210ENST00000493582 LAPTM4AQ15012 233 aa11.58□□□□□ -0.56
HDAC4-210ENST00000493582 SPATS1Q496A3 300 aa11.58□□□□□ -0.56
HDAC4-210ENST00000493582 Q5BKY6 102 aa11.58□□□□□ -0.56
HDAC4-210ENST00000493582 NOMO2Q5JPE7 1267 aa11.58□□□□□ -0.56
HDAC4-210ENST00000493582 BRMS1LQ5PSV4 323 aa11.58□□□□□ -0.56
HDAC4-210ENST00000493582 TPRG1LQ5T0D9 272 aa11.58□□□□□ -0.56
HDAC4-210ENST00000493582 RBM4BQ9BQ04 359 aaKnown RBP11.58□□□□□ -0.56
HDAC4-210ENST00000493582 FICDQ9BVA6 458 aa11.58□□□□□ -0.56
HDAC4-210ENST00000493582 RBM4Q9BWF3 364 aaKnown RBP11.58□□□□□ -0.56
HDAC4-210ENST00000493582 KAT8Q9H7Z6 458 aaKnown RBP11.58□□□□□ -0.56
HDAC4-210ENST00000493582 C14orf119Q9NWQ9 140 aa11.58□□□□□ -0.56
HDAC4-210ENST00000493582 C3orf18Q9UK00 162 aa11.58□□□□□ -0.56
HDAC4-210ENST00000493582 TRHDEQ9UKU6 1024 aa11.58□□□□□ -0.56
HDAC4-210ENST00000493582 SNX6Q9UNH7 406 aa11.58□□□□□ -0.56
HDAC4-210ENST00000493582 ANKRD31Q8N7Z5 1873 aa11.58□□□□□ -0.56
HDAC4-210ENST00000493582 BCKDKO14874 412 aa11.57□□□□□ -0.56
HDAC4-210ENST00000493582 EEDO75530 441 aaKnown RBP11.57□□□□□ -0.56
HDAC4-210ENST00000493582 SLC22A3O75751 556 aa11.57□□□□□ -0.56
HDAC4-210ENST00000493582 PFKLP17858 780 aa11.57□□□□□ -0.56
HDAC4-210ENST00000493582 UBA1P22314 1058 aaKnown RBP11.57□□□□□ -0.56
HDAC4-210ENST00000493582 CDKN2DP55273 166 aa11.57□□□□□ -0.56
HDAC4-210ENST00000493582 SLC35A2P78381 396 aa11.57□□□□□ -0.56
HDAC4-210ENST00000493582 ADIGQ0VDE8 80 aa11.57□□□□□ -0.56
HDAC4-210ENST00000493582 COQ5Q5HYK3 327 aa11.57□□□□□ -0.56
HDAC4-210ENST00000493582 ZNF484Q5JVG2 852 aa11.57□□□□□ -0.56
HDAC4-210ENST00000493582 ARHGAP36Q6ZRI8 547 aa11.57□□□□□ -0.56
HDAC4-210ENST00000493582 PRSS48Q7RTY5 328 aa11.57□□□□□ -0.56
HDAC4-210ENST00000493582 ZNF540Q8NDQ6 660 aa11.57□□□□□ -0.56
HDAC4-210ENST00000493582 PPHLN1Q8NEY8 458 aaKnown RBP11.57□□□□□ -0.56
HDAC4-210ENST00000493582 L3HYPDHQ96EM0 354 aa11.57□□□□□ -0.56
HDAC4-210ENST00000493582 RDH12Q96NR8 316 aa11.57□□□□□ -0.56
HDAC4-210ENST00000493582 TBL1YQ9BQ87 522 aa11.57□□□□□ -0.56
HDAC4-210ENST00000493582 CLPBQ9H078 707 aa11.57□□□□□ -0.56
HDAC4-210ENST00000493582 MMP27Q9H306 513 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms