RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 SEMA5BQ9P283 1151 aa13.7□□□□□ -0.22
VARS-227ENST00000489979 MAP10Q9P2G4 905 aa13.7□□□□□ -0.22
VARS-227ENST00000489979 FARSAQ9Y285 508 aaKnown RBP13.7□□□□□ -0.22
VARS-227ENST00000489979 DPM1O60762 260 aa13.69□□□□□ -0.22
VARS-227ENST00000489979 MMP2P08253 660 aa13.69□□□□□ -0.22
VARS-227ENST00000489979 IDSP22304 550 aa13.69□□□□□ -0.22
VARS-227ENST00000489979 PTGIRP43119 386 aa13.69□□□□□ -0.22
VARS-227ENST00000489979 PDE1BQ01064 536 aa13.69□□□□□ -0.22
VARS-227ENST00000489979 MYL5Q02045 173 aa13.69□□□□□ -0.22
VARS-227ENST00000489979 ACY1Q03154 408 aa13.69□□□□□ -0.22
VARS-227ENST00000489979 GALNT3Q14435 633 aa13.69□□□□□ -0.22
VARS-227ENST00000489979 PAFAH1B3Q15102 231 aaKnown RBP13.69□□□□□ -0.22
VARS-227ENST00000489979 AGAP9Q5VTM2 703 aa13.69□□□□□ -0.22
VARS-227ENST00000489979 E4F1Q66K89 784 aaPredicted RBP13.69□□□□□ -0.22
VARS-227ENST00000489979 WASH2PQ6VEQ5 465 aa13.69□□□□□ -0.22
VARS-227ENST00000489979 BPHLQ86WA6 291 aaPredicted RBP13.69□□□□□ -0.22
VARS-227ENST00000489979 TRAM1L1Q8N609 369 aa13.69□□□□□ -0.22
VARS-227ENST00000489979 MR1Q95460 341 aa13.69□□□□□ -0.22
VARS-227ENST00000489979 FATE1Q969F0 183 aa13.69□□□□□ -0.22
VARS-227ENST00000489979 ZNF514Q96K75 400 aaPredicted RBP13.69□□□□□ -0.22
VARS-227ENST00000489979 TSGA13Q96PP4 275 aa13.69□□□□□ -0.22
VARS-227ENST00000489979 NUP85Q9BW27 656 aa13.69□□□□□ -0.22
VARS-227ENST00000489979 WASH6PQ9NQA3 447 aa13.69□□□□□ -0.22
VARS-227ENST00000489979 ERRFI1Q9UJM3 462 aaPredicted RBP13.69□□□□□ -0.22
VARS-227ENST00000489979 SHOC2Q9UQ13 582 aa13.69□□□□□ -0.22
VARS-227ENST00000489979 WDR37Q9Y2I8 494 aa13.69□□□□□ -0.22
VARS-227ENST00000489979 PCDHGB7Q9Y5F8 929 aa13.69□□□□□ -0.22
VARS-227ENST00000489979 SPTBP11277 2137 aa13.69□□□□□ -0.22
VARS-227ENST00000489979 LRBAP50851 2863 aa13.69□□□□□ -0.22
VARS-227ENST00000489979 CPNE3O75131 537 aaKnown RBP13.68□□□□□ -0.22
VARS-227ENST00000489979 CEACAM4O75871 244 aa13.68□□□□□ -0.22
VARS-227ENST00000489979 CDK14O94921 469 aa13.68□□□□□ -0.22
VARS-227ENST00000489979 SLC4A1P02730 911 aa13.68□□□□□ -0.22
VARS-227ENST00000489979 PIRTP0C851 137 aa13.68□□□□□ -0.22
VARS-227ENST00000489979 LPOP22079 712 aaPredicted RBP13.68□□□□□ -0.22
VARS-227ENST00000489979 DCDC1P59894 354 aa13.68□□□□□ -0.22
VARS-227ENST00000489979 KHDC1Q4VXA5 237 aaKnown RBP13.68□□□□□ -0.22
VARS-227ENST00000489979 SLC6A19Q695T7 634 aa13.68□□□□□ -0.22
VARS-227ENST00000489979 PDPK2PQ6A1A2 396 aa13.68□□□□□ -0.22
VARS-227ENST00000489979 RBMXL3Q8N7X1 1067 aaKnown RBP13.68□□□□□ -0.22
VARS-227ENST00000489979 NIPA2Q8N8Q9 360 aa13.68□□□□□ -0.22
VARS-227ENST00000489979 FDCSPQ8NFU4 85 aa13.68□□□□□ -0.22
VARS-227ENST00000489979 FAM71BQ8TC56 605 aa13.68□□□□□ -0.22
VARS-227ENST00000489979 TCTN2Q96GX1 697 aa13.68□□□□□ -0.22
VARS-227ENST00000489979 MAP3K3Q99759 626 aa13.68□□□□□ -0.22
VARS-227ENST00000489979 ADGRE3Q9BY15 652 aa13.68□□□□□ -0.22
VARS-227ENST00000489979 ISCUQ9H1K1 167 aa13.68□□□□□ -0.22
VARS-227ENST00000489979 FGF21Q9NSA1 209 aa13.68□□□□□ -0.22
VARS-227ENST00000489979 CSMD1Q96PZ7 3565 aa13.68□□□□□ -0.22
VARS-227ENST00000489979 WIPF3A6NGB9 483 aa13.67□□□□□ -0.22
VARS-227ENST00000489979 A6NL46 340 aa13.67□□□□□ -0.22
VARS-227ENST00000489979 ZNF185O15231 689 aa13.67□□□□□ -0.22
VARS-227ENST00000489979 VEGFDO43915 354 aa13.67□□□□□ -0.22
VARS-227ENST00000489979 SCRG1O75711 98 aa13.67□□□□□ -0.22
VARS-227ENST00000489979 LDLRP01130 860 aa13.67□□□□□ -0.22
VARS-227ENST00000489979 JCHAINP01591 159 aa13.67□□□□□ -0.22
VARS-227ENST00000489979 FECHP22830 423 aa13.67□□□□□ -0.22
VARS-227ENST00000489979 PRKCIP41743 596 aa13.67□□□□□ -0.22
VARS-227ENST00000489979 SSR1P43307 286 aaKnown RBP13.67□□□□□ -0.22
VARS-227ENST00000489979 ARL4DP49703 201 aa13.67□□□□□ -0.22
VARS-227ENST00000489979 ARSEP51690 589 aa13.67□□□□□ -0.22
VARS-227ENST00000489979 KLHL30Q0D2K2 578 aa13.67□□□□□ -0.22
VARS-227ENST00000489979 GPS2Q13227 327 aa13.67□□□□□ -0.22
VARS-227ENST00000489979 DPYSL3Q14195 570 aa13.67□□□□□ -0.22
VARS-227ENST00000489979 FAM182AQ5T1J6 154 aa13.67□□□□□ -0.22
VARS-227ENST00000489979 CCDC183Q5T5S1 534 aa13.67□□□□□ -0.22
VARS-227ENST00000489979 TMC3Q7Z5M5 1100 aa13.67□□□□□ -0.22
VARS-227ENST00000489979 C11orf96Q7Z7L8 435 aa13.67□□□□□ -0.22
VARS-227ENST00000489979 TRAPPC5Q8IUR0 188 aa13.67□□□□□ -0.22
VARS-227ENST00000489979 TMEM126BQ8IUX1 230 aa13.67□□□□□ -0.22
VARS-227ENST00000489979 GPR150Q8NGU9 434 aa13.67□□□□□ -0.22
VARS-227ENST00000489979 ADAMTS17Q8TE56 1095 aa13.67□□□□□ -0.22
VARS-227ENST00000489979 PNPLA2Q96AD5 504 aa13.67□□□□□ -0.22
VARS-227ENST00000489979 C19orf60Q96EN9 201 aa13.67□□□□□ -0.22
VARS-227ENST00000489979 NUDT9Q9BW91 350 aa13.67□□□□□ -0.22
VARS-227ENST00000489979 CHST8Q9H2A9 424 aa13.67□□□□□ -0.22
VARS-227ENST00000489979 HSD3B7Q9H2F3 369 aa13.67□□□□□ -0.22
VARS-227ENST00000489979 RAD18Q9NS91 495 aa13.67□□□□□ -0.22
VARS-227ENST00000489979 AIPL1Q9NZN9 384 aa13.67□□□□□ -0.22
VARS-227ENST00000489979 NFKBIL1Q9UBC1 381 aaPredicted RBP13.67□□□□□ -0.22
VARS-227ENST00000489979 IP6K2Q9UHH9 426 aa13.67□□□□□ -0.22
VARS-227ENST00000489979 ABCA12Q86UK0 2595 aa13.67□□□□□ -0.22
VARS-227ENST00000489979 UBA6A0AVT1 1052 aaPredicted RBP13.66□□□□□ -0.22
VARS-227ENST00000489979 KRT86O43790 486 aa13.66□□□□□ -0.22
VARS-227ENST00000489979 TMEM63AO94886 807 aa13.66□□□□□ -0.22
VARS-227ENST00000489979 SKILP12757 684 aa13.66□□□□□ -0.22
VARS-227ENST00000489979 BPIP17213 487 aa13.66□□□□□ -0.22
VARS-227ENST00000489979 VCLP18206 1134 aa13.66□□□□□ -0.22
VARS-227ENST00000489979 VARSP26640 1264 aaKnown RBP13.66□□□□□ -0.22
VARS-227ENST00000489979 GJC1P36383 396 aa13.66□□□□□ -0.22
VARS-227ENST00000489979 HALP42357 657 aa13.66□□□□□ -0.22
VARS-227ENST00000489979 GBE1Q04446 702 aa13.66□□□□□ -0.22
VARS-227ENST00000489979 NR6A1Q15406 480 aa13.66□□□□□ -0.22
VARS-227ENST00000489979 GPR19Q15760 415 aa13.66□□□□□ -0.22
VARS-227ENST00000489979 ATP13A4Q4VNC1 1196 aa13.66□□□□□ -0.22
VARS-227ENST00000489979 DNTTIP2Q5QJE6 756 aaKnown RBP13.66□□□□□ -0.22
VARS-227ENST00000489979 FAM69BQ5VUD6 431 aa13.66□□□□□ -0.22
VARS-227ENST00000489979 IZUMO3Q5VZ72 239 aa13.66□□□□□ -0.22
VARS-227ENST00000489979 LCN10Q6JVE6 187 aa13.66□□□□□ -0.22
VARS-227ENST00000489979 KLHL35Q6PF15 583 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms