RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 GBF1Q92538 1859 aa17.76■□□□□ 0.43
VIM-206ENST00000487938 F11P03951 625 aa17.75■□□□□ 0.43
VIM-206ENST00000487938 GPIP06744 558 aa17.75■□□□□ 0.43
VIM-206ENST00000487938 IRF1P10914 325 aa17.75■□□□□ 0.43
VIM-206ENST00000487938 CDK9P50750 372 aaKnown RBP17.75■□□□□ 0.43
VIM-206ENST00000487938 ERVK-8P63133 956 aa17.75■□□□□ 0.43
VIM-206ENST00000487938 SLC36A3Q495N2 470 aa17.75■□□□□ 0.43
VIM-206ENST00000487938 TMEM173Q86WV6 379 aaPredicted RBP17.75■□□□□ 0.43
VIM-206ENST00000487938 OFCC1Q8IZS5 231 aa17.75■□□□□ 0.43
VIM-206ENST00000487938 MAGEE2Q8TD90 523 aaPredicted RBP17.75■□□□□ 0.43
VIM-206ENST00000487938 TSPEARQ8WU66 669 aa17.75■□□□□ 0.43
VIM-206ENST00000487938 BRINP2Q9C0B6 783 aa17.75■□□□□ 0.43
VIM-206ENST00000487938 SUN2Q9UH99 717 aa17.75■□□□□ 0.43
VIM-206ENST00000487938 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP17.75■□□□□ 0.43
VIM-206ENST00000487938 SCAMP3O14828 347 aaKnown RBP17.75■□□□□ 0.43
VIM-206ENST00000487938 ADAM12O43184 909 aa17.75■□□□□ 0.43
VIM-206ENST00000487938 RASAL1O95294 804 aa17.75■□□□□ 0.43
VIM-206ENST00000487938 TTPAP49638 278 aa17.75■□□□□ 0.43
VIM-206ENST00000487938 TUBA4AP68366 448 aa17.75■□□□□ 0.43
VIM-206ENST00000487938 ZNF177Q13360 481 aaPredicted RBP17.75■□□□□ 0.43
VIM-206ENST00000487938 TGFBIQ15582 683 aa17.75■□□□□ 0.43
VIM-206ENST00000487938 LRRC23Q53EV4 343 aaPredicted RBP17.75■□□□□ 0.43
VIM-206ENST00000487938 RNF219Q5W0B1 726 aaPredicted RBP17.75■□□□□ 0.43
VIM-206ENST00000487938 LETMD1Q6P1Q0 360 aa17.75■□□□□ 0.43
VIM-206ENST00000487938 FUT10Q6P4F1 479 aa17.75■□□□□ 0.43
VIM-206ENST00000487938 SPRED1Q7Z699 444 aa17.75■□□□□ 0.43
VIM-206ENST00000487938 BIRC7Q96CA5 298 aa17.75■□□□□ 0.43
VIM-206ENST00000487938 ANAPC2Q9UJX6 822 aa17.75■□□□□ 0.43
VIM-206ENST00000487938 KATNA1O75449 491 aa17.74■□□□□ 0.43
VIM-206ENST00000487938 BMP10O95393 424 aa17.74■□□□□ 0.43
VIM-206ENST00000487938 RFC2P35250 354 aa17.74■□□□□ 0.43
VIM-206ENST00000487938 HTR6P50406 440 aa17.74■□□□□ 0.43
VIM-206ENST00000487938 OR4D2P58180 307 aa17.74■□□□□ 0.43
VIM-206ENST00000487938 TRAF2Q12933 501 aa17.74■□□□□ 0.43
VIM-206ENST00000487938 GRIK2Q13002 908 aa17.74■□□□□ 0.43
VIM-206ENST00000487938 ATP6AP1LQ52LC2 224 aa17.74■□□□□ 0.43
VIM-206ENST00000487938 PDCD4Q53EL6 469 aaKnown RBP17.74■□□□□ 0.43
VIM-206ENST00000487938 TMTC4Q5T4D3 741 aa17.74■□□□□ 0.43
VIM-206ENST00000487938 PTRH1Q86Y79 214 aaKnown RBP17.74■□□□□ 0.43
VIM-206ENST00000487938 SFRP1Q8N474 314 aa17.74■□□□□ 0.43
VIM-206ENST00000487938 GOLM1Q8NBJ4 401 aa17.74■□□□□ 0.43
VIM-206ENST00000487938 METTL6Q8TCB7 284 aa17.74■□□□□ 0.43
VIM-206ENST00000487938 CCDC97Q96F63 343 aaPredicted RBP17.74■□□□□ 0.43
VIM-206ENST00000487938 VPS50Q96JG6 964 aa17.74■□□□□ 0.43
VIM-206ENST00000487938 RPF2Q9H7B2 306 aaKnown RBP17.74■□□□□ 0.43
VIM-206ENST00000487938 CHD5Q8TDI0 1954 aa17.74■□□□□ 0.43
VIM-206ENST00000487938 KLHL33A6NCF5 533 aa17.74■□□□□ 0.43
VIM-206ENST00000487938 TMEM88BA6NKF7 163 aa17.74■□□□□ 0.43
VIM-206ENST00000487938 CLOCKO15516 846 aa17.74■□□□□ 0.43
VIM-206ENST00000487938 SNAP91O60641 907 aa17.74■□□□□ 0.43
VIM-206ENST00000487938 PRAMEF12O95522 483 aa17.74■□□□□ 0.43
VIM-206ENST00000487938 RPL17P18621 184 aaKnown RBP17.74■□□□□ 0.43
VIM-206ENST00000487938 HRH2P25021 359 aa17.74■□□□□ 0.43
VIM-206ENST00000487938 CST5P28325 142 aaPredicted RBP17.74■□□□□ 0.43
VIM-206ENST00000487938 IL27RAQ6UWB1 636 aa17.74■□□□□ 0.43
VIM-206ENST00000487938 EFL1Q7Z2Z2 1120 aaKnown RBP17.74■□□□□ 0.43
VIM-206ENST00000487938 WBP2Q969T9 261 aa17.74■□□□□ 0.43
VIM-206ENST00000487938 PPM1MQ96MI6 270 aa17.74■□□□□ 0.43
VIM-206ENST00000487938 RIC8BQ9NVN3 520 aa17.74■□□□□ 0.43
VIM-206ENST00000487938 TMEM161AQ9NX61 479 aa17.74■□□□□ 0.43
VIM-206ENST00000487938 PCDHB7Q9Y5E2 793 aa17.74■□□□□ 0.43
VIM-206ENST00000487938 A0A087WXM4 84 aa17.73■□□□□ 0.43
VIM-206ENST00000487938 FAM234BA2RU67 622 aa17.73■□□□□ 0.43
VIM-206ENST00000487938 COCHO43405 550 aa17.73■□□□□ 0.43
VIM-206ENST00000487938 CLDN11O75508 207 aa17.73■□□□□ 0.43
VIM-206ENST00000487938 CAPN1P07384 714 aa17.73■□□□□ 0.43
VIM-206ENST00000487938 CORO1AP31146 461 aaKnown RBP17.73■□□□□ 0.43
VIM-206ENST00000487938 SELPLGQ14242 412 aa17.73■□□□□ 0.43
VIM-206ENST00000487938 TBPL2Q6SJ96 375 aa17.73■□□□□ 0.43
VIM-206ENST00000487938 CLVS1Q8IUQ0 354 aaPredicted RBP17.73■□□□□ 0.43
VIM-206ENST00000487938 ERI1Q8IV48 349 aaKnown RBP17.73■□□□□ 0.43
VIM-206ENST00000487938 ALDH16A1Q8IZ83 802 aa17.73■□□□□ 0.43
VIM-206ENST00000487938 RNF145Q96MT1 663 aa17.73■□□□□ 0.43
VIM-206ENST00000487938 CASD1Q96PB1 797 aa17.73■□□□□ 0.43
VIM-206ENST00000487938 ADGRE3Q9BY15 652 aa17.73■□□□□ 0.43
VIM-206ENST00000487938 EBF1Q9UH73 591 aa17.73■□□□□ 0.43
VIM-206ENST00000487938 VPS9D1Q9Y2B5 631 aa17.73■□□□□ 0.43
VIM-206ENST00000487938 FADS3Q9Y5Q0 445 aa17.73■□□□□ 0.43
VIM-206ENST00000487938 PFDN6O15212 129 aa17.73■□□□□ 0.43
VIM-206ENST00000487938 TBC1D4O60343 1298 aa17.73■□□□□ 0.43
VIM-206ENST00000487938 CNPP09543 421 aaKnown RBP17.73■□□□□ 0.43
VIM-206ENST00000487938 G6PDP11413 515 aa17.73■□□□□ 0.43
VIM-206ENST00000487938 ITGB6P18564 788 aa17.73■□□□□ 0.43
VIM-206ENST00000487938 DGKQP52824 942 aa17.73■□□□□ 0.43
VIM-206ENST00000487938 EEFSECP57772 596 aaKnown RBP17.73■□□□□ 0.43
VIM-206ENST00000487938 HPCAP84074 193 aa17.73■□□□□ 0.43
VIM-206ENST00000487938 ARF5P84085 180 aa17.73■□□□□ 0.43
VIM-206ENST00000487938 EMX2Q04743 252 aa17.73■□□□□ 0.43
VIM-206ENST00000487938 TWF1Q12792 350 aa17.73■□□□□ 0.43
VIM-206ENST00000487938 PYCR3Q53H96 274 aa17.73■□□□□ 0.43
VIM-206ENST00000487938 GLYATQ6IB77 296 aa17.73■□□□□ 0.43
VIM-206ENST00000487938 GPR141Q7Z602 305 aa17.73■□□□□ 0.43
VIM-206ENST00000487938 TIMMDC1Q9NPL8 285 aa17.73■□□□□ 0.43
VIM-206ENST00000487938 ZIM2Q9NZV7 527 aa17.73■□□□□ 0.43
VIM-206ENST00000487938 ZMYM5Q9UJ78 669 aa17.73■□□□□ 0.43
VIM-206ENST00000487938 ABT1Q9ULW3 272 aaKnown RBP17.73■□□□□ 0.43
VIM-206ENST00000487938 TMCO1Q9UM00 188 aa17.73■□□□□ 0.43
VIM-206ENST00000487938 COMMD10Q9Y6G5 202 aa17.73■□□□□ 0.43
VIM-206ENST00000487938 hCG_2014768A0A024R1R8 64 aa17.72■□□□□ 0.43
VIM-206ENST00000487938 ILVBLA1L0T0 632 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms