RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 UGT1A3P35503 534 aa14.03□□□□□ -0.16
CUX1-209ENST00000487284 UGT1A5P35504 534 aa14.03□□□□□ -0.16
CUX1-209ENST00000487284 MMP12P39900 470 aa14.03□□□□□ -0.16
CUX1-209ENST00000487284 RPS9P46781 194 aaKnown RBP14.03□□□□□ -0.16
CUX1-209ENST00000487284 ATP6V0D1P61421 351 aa14.03□□□□□ -0.16
CUX1-209ENST00000487284 RCN2Q14257 317 aa14.03□□□□□ -0.16
CUX1-209ENST00000487284 SPRED3Q2MJR0 410 aa14.03□□□□□ -0.16
CUX1-209ENST00000487284 AGBL4Q5VU57 503 aa14.03□□□□□ -0.16
CUX1-209ENST00000487284 KIAA1324Q6UXG2 1013 aaKnown RBP14.03□□□□□ -0.16
CUX1-209ENST00000487284 RFLNAQ6ZTI6 216 aa14.03□□□□□ -0.16
CUX1-209ENST00000487284 PIWIL4Q7Z3Z4 852 aaKnown RBP14.03□□□□□ -0.16
CUX1-209ENST00000487284 WDR75Q8IWA0 830 aaKnown RBP14.03□□□□□ -0.16
CUX1-209ENST00000487284 HDDC3Q8N4P3 179 aa14.03□□□□□ -0.16
CUX1-209ENST00000487284 NKAPQ8N5F7 415 aaKnown RBP14.03□□□□□ -0.16
CUX1-209ENST00000487284 GIMAP7Q8NHV1 300 aa14.03□□□□□ -0.16
CUX1-209ENST00000487284 HMGB4Q8WW32 186 aa14.03□□□□□ -0.16
CUX1-209ENST00000487284 FAM136AQ96C01 138 aa14.03□□□□□ -0.16
CUX1-209ENST00000487284 SGF29Q96ES7 293 aa14.03□□□□□ -0.16
CUX1-209ENST00000487284 CCDC97Q96F63 343 aaPredicted RBP14.03□□□□□ -0.16
CUX1-209ENST00000487284 HHIPQ96QV1 700 aa14.03□□□□□ -0.16
CUX1-209ENST00000487284 CLPBQ9H078 707 aa14.03□□□□□ -0.16
CUX1-209ENST00000487284 ALG9Q9H6U8 611 aa14.03□□□□□ -0.16
CUX1-209ENST00000487284 POLMQ9NP87 494 aaPredicted RBP14.03□□□□□ -0.16
CUX1-209ENST00000487284 GALPQ9UBC7 116 aa14.03□□□□□ -0.16
CUX1-209ENST00000487284 TRMT6Q9UJA5 497 aaKnown RBP14.03□□□□□ -0.16
CUX1-209ENST00000487284 GNPTGQ9UJJ9 305 aa14.03□□□□□ -0.16
CUX1-209ENST00000487284 HAO1Q9UJM8 370 aa14.03□□□□□ -0.16
CUX1-209ENST00000487284 IGLV3-16A0A075B6K0 115 aa14.02□□□□□ -0.16
CUX1-209ENST00000487284 CCDC189A1A4V9 331 aa14.02□□□□□ -0.16
CUX1-209ENST00000487284 NEMP2A6NFY4 417 aa14.02□□□□□ -0.16
CUX1-209ENST00000487284 H3BMM5 538 aa14.02□□□□□ -0.16
CUX1-209ENST00000487284 AREL1O15033 823 aa14.02□□□□□ -0.16
CUX1-209ENST00000487284 NPHS1O60500 1241 aa14.02□□□□□ -0.16
CUX1-209ENST00000487284 RNASEH2AO75792 299 aaKnown RBP14.02□□□□□ -0.16
CUX1-209ENST00000487284 UBOX5O94941 541 aa14.02□□□□□ -0.16
CUX1-209ENST00000487284 TSPAN12O95859 305 aa14.02□□□□□ -0.16
CUX1-209ENST00000487284 ALOX15P16050 662 aaPredicted RBP14.02□□□□□ -0.16
CUX1-209ENST00000487284 CLCN7P51798 805 aa14.02□□□□□ -0.16
CUX1-209ENST00000487284 NAGLUP54802 743 aa14.02□□□□□ -0.16
CUX1-209ENST00000487284 CORO7P57737 925 aa14.02□□□□□ -0.16
CUX1-209ENST00000487284 NFKB2Q00653 900 aa14.02□□□□□ -0.16
CUX1-209ENST00000487284 MTAPQ13126 283 aa14.02□□□□□ -0.16
CUX1-209ENST00000487284 SETDB1Q15047 1291 aa14.02□□□□□ -0.16
CUX1-209ENST00000487284 SPDYAQ5MJ70 313 aa14.02□□□□□ -0.16
CUX1-209ENST00000487284 ANO7Q6IWH7 933 aa14.02□□□□□ -0.16
CUX1-209ENST00000487284 UGT3A1Q6NUS8 523 aa14.02□□□□□ -0.16
CUX1-209ENST00000487284 ERAP2Q6P179 960 aa14.02□□□□□ -0.16
CUX1-209ENST00000487284 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP14.02□□□□□ -0.16
CUX1-209ENST00000487284 HSD11B1LQ7Z5J1 315 aa14.02□□□□□ -0.16
CUX1-209ENST00000487284 SLC22A9Q8IVM8 553 aa14.02□□□□□ -0.16
CUX1-209ENST00000487284 KIAA1191Q96A73 305 aa14.02□□□□□ -0.16
CUX1-209ENST00000487284 ULK4Q96C45 1275 aa14.02□□□□□ -0.16
CUX1-209ENST00000487284 LRRC37BQ96QE4 947 aa14.02□□□□□ -0.16
CUX1-209ENST00000487284 ATOH8Q96SQ7 321 aa14.02□□□□□ -0.16
CUX1-209ENST00000487284 SLC30A3Q99726 388 aa14.02□□□□□ -0.16
CUX1-209ENST00000487284 BOCQ9BWV1 1114 aa14.02□□□□□ -0.16
CUX1-209ENST00000487284 WWP1Q9H0M0 922 aa14.02□□□□□ -0.16
CUX1-209ENST00000487284 STN1Q9H668 368 aaKnown RBP14.02□□□□□ -0.16
CUX1-209ENST00000487284 CD93Q9NPY3 652 aa14.02□□□□□ -0.16
CUX1-209ENST00000487284 RAD18Q9NS91 495 aa14.02□□□□□ -0.16
CUX1-209ENST00000487284 SMOXQ9NWM0 555 aa14.02□□□□□ -0.16
CUX1-209ENST00000487284 FBXL12Q9NXK8 326 aa14.02□□□□□ -0.16
CUX1-209ENST00000487284 ZDHHC3Q9NYG2 299 aa14.02□□□□□ -0.16
CUX1-209ENST00000487284 MARCOQ9UEW3 520 aaPredicted RBP14.02□□□□□ -0.16
CUX1-209ENST00000487284 DHRS7Q9Y394 339 aa14.02□□□□□ -0.16
CUX1-209ENST00000487284 ZDBF2Q9HCK1 2354 aa14.02□□□□□ -0.17
CUX1-209ENST00000487284 RGSL1A5PLK6 1076 aa14.01□□□□□ -0.17
CUX1-209ENST00000487284 E5RI56 91 aa14.01□□□□□ -0.17
CUX1-209ENST00000487284 PI15O43692 258 aa14.01□□□□□ -0.17
CUX1-209ENST00000487284 IPO13O94829 963 aaKnown RBP14.01□□□□□ -0.17
CUX1-209ENST00000487284 SNUPNO95149 360 aaKnown RBP14.01□□□□□ -0.17
CUX1-209ENST00000487284 SERPINB5P36952 375 aa14.01□□□□□ -0.17
CUX1-209ENST00000487284 KCNC1P48547 511 aa14.01□□□□□ -0.17
CUX1-209ENST00000487284 TAS2R38P59533 333 aa14.01□□□□□ -0.17
CUX1-209ENST00000487284 ZBTB16Q05516 673 aa14.01□□□□□ -0.17
CUX1-209ENST00000487284 OR4D1Q15615 310 aa14.01□□□□□ -0.17
CUX1-209ENST00000487284 TTC31Q49AM3 519 aaPredicted RBP14.01□□□□□ -0.17
CUX1-209ENST00000487284 ATP13A5Q4VNC0 1218 aa14.01□□□□□ -0.17
CUX1-209ENST00000487284 PTRHD1Q6GMV3 140 aaKnown RBP14.01□□□□□ -0.17
CUX1-209ENST00000487284 MACC1Q6ZN28 852 aa14.01□□□□□ -0.17
CUX1-209ENST00000487284 SPEM1Q8N4L4 309 aa14.01□□□□□ -0.17
CUX1-209ENST00000487284 SIDT2Q8NBJ9 832 aaKnown RBP14.01□□□□□ -0.17
CUX1-209ENST00000487284 TSTD1Q8NFU3 115 aa14.01□□□□□ -0.17
CUX1-209ENST00000487284 GANCQ8TET4 914 aa14.01□□□□□ -0.17
CUX1-209ENST00000487284 SKA1Q96BD8 255 aa14.01□□□□□ -0.17
CUX1-209ENST00000487284 PDLIM5Q96HC4 596 aaKnown RBP14.01□□□□□ -0.17
CUX1-209ENST00000487284 CDH19Q9H159 772 aa14.01□□□□□ -0.17
CUX1-209ENST00000487284 MYLK2Q9H1R3 596 aa14.01□□□□□ -0.17
CUX1-209ENST00000487284 ACTR5Q9H9F9 607 aaPredicted RBP14.01□□□□□ -0.17
CUX1-209ENST00000487284 SCML1Q9UN30 329 aa14.01□□□□□ -0.17
CUX1-209ENST00000487284 SLC12A4Q9UP95 1085 aa14.01□□□□□ -0.17
CUX1-209ENST00000487284 RAP2CQ9Y3L5 183 aa14.01□□□□□ -0.17
CUX1-209ENST00000487284 ANKRD65E5RJM6 399 aa14□□□□□ -0.17
CUX1-209ENST00000487284 PSMD11O00231 422 aa14□□□□□ -0.17
CUX1-209ENST00000487284 ZNF195O14628 629 aa14□□□□□ -0.17
CUX1-209ENST00000487284 KERAO60938 352 aa14□□□□□ -0.17
CUX1-209ENST00000487284 CHRNGP07510 517 aa14□□□□□ -0.17
CUX1-209ENST00000487284 KITP10721 976 aa14□□□□□ -0.17
CUX1-209ENST00000487284 ACADMP11310 421 aa14□□□□□ -0.17
CUX1-209ENST00000487284 CHRM3P20309 590 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms