RNA–Protein interactions for RNA: ENST00000486941.1

SNRNP40-205, Transcript of small nuclear ribonucleoprotein U5 subunit 40, human

TSL 2

Gene SNRNP40, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNRNP40-205	ENST00000486941	TSTD1	Q8NFU3	115 aa		4.17	□□□□□ -1.74
SNRNP40-205	ENST00000486941	RASSF8	Q8NHQ8	419 aa		4.17	□□□□□ -1.74
SNRNP40-205	ENST00000486941	B4GALNT2	Q8NHY0	566 aa		4.17	□□□□□ -1.74
SNRNP40-205	ENST00000486941	JPH3	Q8WXH2	748 aa	Predicted RBP	4.17	□□□□□ -1.74
SNRNP40-205	ENST00000486941	TCEAL3	Q969E4	200 aa		4.17	□□□□□ -1.74
SNRNP40-205	ENST00000486941	MSI2	Q96DH6	328 aa	Known RBP	4.17	□□□□□ -1.74
SNRNP40-205	ENST00000486941	SPATA17	Q96L03	361 aa		4.17	□□□□□ -1.74
SNRNP40-205	ENST00000486941	CNOT6L	Q96LI5	555 aa	Known RBP	4.17	□□□□□ -1.74
SNRNP40-205	ENST00000486941	ACCS	Q96QU6	501 aa		4.17	□□□□□ -1.74
SNRNP40-205	ENST00000486941	SLC22A12	Q96S37	553 aa		4.17	□□□□□ -1.74
SNRNP40-205	ENST00000486941	FAM213A	Q9BRX8	229 aa		4.17	□□□□□ -1.74
SNRNP40-205	ENST00000486941	EDEM2	Q9BV94	578 aa		4.17	□□□□□ -1.74
SNRNP40-205	ENST00000486941	GATA5	Q9BWX5	397 aa	Predicted RBP	4.17	□□□□□ -1.74
SNRNP40-205	ENST00000486941	B3GNT5	Q9BYG0	378 aa		4.17	□□□□□ -1.74
SNRNP40-205	ENST00000486941	LINC00597	Q9H2U6	94 aa		4.17	□□□□□ -1.74
SNRNP40-205	ENST00000486941	MRPL44	Q9H9J2	332 aa	Known RBP	4.17	□□□□□ -1.74
SNRNP40-205	ENST00000486941	TMEM9B	Q9NQ34	198 aa		4.17	□□□□□ -1.74
SNRNP40-205	ENST00000486941	SNX15	Q9NRS6	342 aa		4.17	□□□□□ -1.74
SNRNP40-205	ENST00000486941	EHD2	Q9NZN4	543 aa		4.17	□□□□□ -1.74
SNRNP40-205	ENST00000486941	SEL1L	Q9UBV2	794 aa		4.17	□□□□□ -1.74
SNRNP40-205	ENST00000486941	GTF3C4	Q9UKN8	822 aa		4.17	□□□□□ -1.74
SNRNP40-205	ENST00000486941	ITGA11	Q9UKX5	1188 aa		4.17	□□□□□ -1.74
SNRNP40-205	ENST00000486941	FZD4	Q9ULV1	537 aa		4.17	□□□□□ -1.74
SNRNP40-205	ENST00000486941	MMP17	Q9ULZ9	603 aa		4.17	□□□□□ -1.74
SNRNP40-205	ENST00000486941	ARHGAP26	Q9UNA1	814 aa		4.17	□□□□□ -1.74
SNRNP40-205	ENST00000486941	LAMA1	P25391	3075 aa		4.17	□□□□□ -1.74
SNRNP40-205	ENST00000486941	ASXL3	Q9C0F0	2248 aa		4.16	□□□□□ -1.74
SNRNP40-205	ENST00000486941	FRY	Q5TBA9	3013 aa		4.16	□□□□□ -1.74
SNRNP40-205	ENST00000486941	C2CD4B	A6NLJ0	364 aa		4.16	□□□□□ -1.74
SNRNP40-205	ENST00000486941	ZNF814	B7Z6K7	855 aa		4.16	□□□□□ -1.74
SNRNP40-205	ENST00000486941	PYCARD-AS1	I3L0S3	204 aa		4.16	□□□□□ -1.74
SNRNP40-205	ENST00000486941	CDX4	O14627	284 aa	Predicted RBP	4.16	□□□□□ -1.74
SNRNP40-205	ENST00000486941	SLC9A3R1	O14745	358 aa	Predicted RBP	4.16	□□□□□ -1.74
SNRNP40-205	ENST00000486941	PHGDH	O43175	533 aa	Known RBP	4.16	□□□□□ -1.74
SNRNP40-205	ENST00000486941	TMPRSS11D	O60235	418 aa		4.16	□□□□□ -1.74
SNRNP40-205	ENST00000486941	RNF8	O76064	485 aa		4.16	□□□□□ -1.74
SNRNP40-205	ENST00000486941	KRT19	P08727	400 aa		4.16	□□□□□ -1.74
SNRNP40-205	ENST00000486941	DPP6	P42658	865 aa		4.16	□□□□□ -1.74
SNRNP40-205	ENST00000486941	IRX4	P78413	519 aa		4.16	□□□□□ -1.74
SNRNP40-205	ENST00000486941	SLC7A9	P82251	487 aa		4.16	□□□□□ -1.74
SNRNP40-205	ENST00000486941	ZXDB	P98169	803 aa		4.16	□□□□□ -1.74
SNRNP40-205	ENST00000486941	RAB32	Q13637	225 aa		4.16	□□□□□ -1.74
SNRNP40-205	ENST00000486941	ALCAM	Q13740	583 aa		4.16	□□□□□ -1.74
SNRNP40-205	ENST00000486941	BYSL	Q13895	437 aa	Known RBP	4.16	□□□□□ -1.74
SNRNP40-205	ENST00000486941	SEMA3A	Q14563	771 aa		4.16	□□□□□ -1.74
SNRNP40-205	ENST00000486941	ANO6	Q4KMQ2	910 aa		4.16	□□□□□ -1.74
SNRNP40-205	ENST00000486941	C3orf38	Q5JPI3	329 aa		4.16	□□□□□ -1.74
SNRNP40-205	ENST00000486941	GRHL2	Q6ISB3	625 aa		4.16	□□□□□ -1.74
SNRNP40-205	ENST00000486941	DENND5B	Q6ZUT9	1274 aa		4.16	□□□□□ -1.74
SNRNP40-205	ENST00000486941	SCN4B	Q8IWT1	228 aa		4.16	□□□□□ -1.74
SNRNP40-205	ENST00000486941	ADGRF2	Q8IZF7	708 aa		4.16	□□□□□ -1.74
SNRNP40-205	ENST00000486941	SYCP3	Q8IZU3	236 aa		4.16	□□□□□ -1.74
SNRNP40-205	ENST00000486941	STKLD1	Q8NE28	680 aa		4.16	□□□□□ -1.74
SNRNP40-205	ENST00000486941	OLIG1	Q8TAK6	271 aa		4.16	□□□□□ -1.74
SNRNP40-205	ENST00000486941	PIGK	Q92643	395 aa		4.16	□□□□□ -1.74
SNRNP40-205	ENST00000486941	SPSB4	Q96A44	273 aa		4.16	□□□□□ -1.74
SNRNP40-205	ENST00000486941	DNAJC19	Q96DA6	116 aa		4.16	□□□□□ -1.74
SNRNP40-205	ENST00000486941	SAAL1	Q96ER3	474 aa		4.16	□□□□□ -1.74
SNRNP40-205	ENST00000486941	EPSTI1	Q96J88	318 aa		4.16	□□□□□ -1.74
SNRNP40-205	ENST00000486941	C8orf48	Q96LL4	319 aa		4.16	□□□□□ -1.74
SNRNP40-205	ENST00000486941	TRMO	Q9BU70	441 aa		4.16	□□□□□ -1.74
SNRNP40-205	ENST00000486941	SCNM1	Q9BWG6	230 aa		4.16	□□□□□ -1.74
SNRNP40-205	ENST00000486941	TTLL2	Q9BWV7	592 aa		4.16	□□□□□ -1.74
SNRNP40-205	ENST00000486941	PDE11A	Q9HCR9	933 aa		4.16	□□□□□ -1.74
SNRNP40-205	ENST00000486941	TRPC7	Q9HCX4	862 aa		4.16	□□□□□ -1.74
SNRNP40-205	ENST00000486941	OLFML3	Q9NRN5	406 aa		4.16	□□□□□ -1.74
SNRNP40-205	ENST00000486941	RBAK	Q9NYW8	714 aa	Predicted RBP	4.16	□□□□□ -1.74
SNRNP40-205	ENST00000486941	SIX4	Q9UIU6	781 aa		4.16	□□□□□ -1.74
SNRNP40-205	ENST00000486941	CDH9	Q9ULB4	789 aa		4.16	□□□□□ -1.74
SNRNP40-205	ENST00000486941	SNX9	Q9Y5X1	595 aa		4.16	□□□□□ -1.74
SNRNP40-205	ENST00000486941	URB1	O60287	2271 aa	Known RBP	4.16	□□□□□ -1.74
SNRNP40-205	ENST00000486941	AKAP13	Q12802	2813 aa		4.16	□□□□□ -1.74
SNRNP40-205	ENST00000486941	DSP	P15924	2871 aa	Known RBP	4.15	□□□□□ -1.74
SNRNP40-205	ENST00000486941	E2F8	A0AVK6	867 aa		4.15	□□□□□ -1.75
SNRNP40-205	ENST00000486941	FRMD3	A2A2Y4	597 aa		4.15	□□□□□ -1.75
SNRNP40-205	ENST00000486941	GOLGA8IP	A6NC78	632 aa		4.15	□□□□□ -1.75
SNRNP40-205	ENST00000486941	ZNF840P	A6NDX5	716 aa		4.15	□□□□□ -1.75
SNRNP40-205	ENST00000486941	ZNF233	A6NK53	670 aa		4.15	□□□□□ -1.75
SNRNP40-205	ENST00000486941	GOLGA8J	A6NMD2	632 aa		4.15	□□□□□ -1.75
SNRNP40-205	ENST00000486941	PALM2-AKAP2	B1ALY0	433 aa	Predicted RBP	4.15	□□□□□ -1.75
SNRNP40-205	ENST00000486941	SGK1	O00141	431 aa		4.15	□□□□□ -1.75
SNRNP40-205	ENST00000486941	AKAP10	O43572	662 aa		4.15	□□□□□ -1.75
SNRNP40-205	ENST00000486941	HCRT	O43612	131 aa		4.15	□□□□□ -1.75
SNRNP40-205	ENST00000486941	ATP2C2	O75185	946 aa		4.15	□□□□□ -1.75
SNRNP40-205	ENST00000486941	TACC1	O75410	805 aa		4.15	□□□□□ -1.75
SNRNP40-205	ENST00000486941	KAT7	O95251	611 aa		4.15	□□□□□ -1.75
SNRNP40-205	ENST00000486941	GCNT3	O95395	438 aa		4.15	□□□□□ -1.75
SNRNP40-205	ENST00000486941	OLFM2	O95897	454 aa		4.15	□□□□□ -1.75
SNRNP40-205	ENST00000486941	OAS1	P00973	400 aa	Known RBP	4.15	□□□□□ -1.75
SNRNP40-205	ENST00000486941	TNNC2	P02585	160 aa		4.15	□□□□□ -1.75
SNRNP40-205	ENST00000486941	APOD	P05090	189 aa		4.15	□□□□□ -1.75
SNRNP40-205	ENST00000486941	BCKDHB	P21953	392 aa		4.15	□□□□□ -1.75
SNRNP40-205	ENST00000486941	WARS	P23381	471 aa	Known RBP	4.15	□□□□□ -1.75
SNRNP40-205	ENST00000486941	BDNF	P23560	247 aa		4.15	□□□□□ -1.75
SNRNP40-205	ENST00000486941	LMO2	P25791	158 aa		4.15	□□□□□ -1.75
SNRNP40-205	ENST00000486941	ANXA13	P27216	316 aa		4.15	□□□□□ -1.75
SNRNP40-205	ENST00000486941	SLC7A1	P30825	629 aa		4.15	□□□□□ -1.75
SNRNP40-205	ENST00000486941	HOXD12	P35452	270 aa		4.15	□□□□□ -1.75
SNRNP40-205	ENST00000486941	GNL1	P36915	607 aa	Predicted RBP	4.15	□□□□□ -1.75
SNRNP40-205	ENST00000486941	EIF2D	P41214	584 aa	Known RBP	4.15	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms