RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 TRIM15Q9C019 465 aa12.07□□□□□ -0.48
PTPRF-212ENST00000477970 MTIF3Q9H2K0 278 aaKnown RBP12.07□□□□□ -0.48
PTPRF-212ENST00000477970 PACSIN3Q9UKS6 424 aa12.07□□□□□ -0.48
PTPRF-212ENST00000477970 AP4S1Q9Y587 144 aa12.07□□□□□ -0.48
PTPRF-212ENST00000477970 ATP6AP2A0A1C7CYW4 349 aa12.07□□□□□ -0.48
PTPRF-212ENST00000477970 A0A1W2PP18 115 aa12.07□□□□□ -0.48
PTPRF-212ENST00000477970 IFRD1O00458 451 aaPredicted RBP12.07□□□□□ -0.48
PTPRF-212ENST00000477970 ATP6AP2O75787 350 aa12.07□□□□□ -0.48
PTPRF-212ENST00000477970 FGBP02675 491 aa12.07□□□□□ -0.48
PTPRF-212ENST00000477970 BCL2L1Q07817 233 aa12.07□□□□□ -0.48
PTPRF-212ENST00000477970 GRAMD1BQ3KR37 738 aa12.07□□□□□ -0.48
PTPRF-212ENST00000477970 CDKL4Q5MAI5 379 aa12.07□□□□□ -0.48
PTPRF-212ENST00000477970 SPOUT1Q5T280 376 aaKnown RBP12.07□□□□□ -0.48
PTPRF-212ENST00000477970 SBSNQ6UWP8 590 aa12.07□□□□□ -0.48
PTPRF-212ENST00000477970 CPNE9Q8IYJ1 553 aa12.07□□□□□ -0.48
PTPRF-212ENST00000477970 OR9I1Q8NGQ6 314 aa12.07□□□□□ -0.48
PTPRF-212ENST00000477970 KCNA7Q96RP8 456 aa12.07□□□□□ -0.48
PTPRF-212ENST00000477970 ZBP1Q9H171 429 aa12.07□□□□□ -0.48
PTPRF-212ENST00000477970 ZFYVE1Q9HBF4 777 aa12.07□□□□□ -0.48
PTPRF-212ENST00000477970 SEMA4BQ9NPR2 832 aaPredicted RBP12.07□□□□□ -0.48
PTPRF-212ENST00000477970 HEBP1Q9NRV9 189 aa12.07□□□□□ -0.48
PTPRF-212ENST00000477970 SMPD4Q9NXE4 827 aa12.07□□□□□ -0.48
PTPRF-212ENST00000477970 PLK2Q9NYY3 685 aa12.07□□□□□ -0.48
PTPRF-212ENST00000477970 OARD1Q9Y530 152 aa12.07□□□□□ -0.48
PTPRF-212ENST00000477970 FXYD1O00168 92 aa12.06□□□□□ -0.48
PTPRF-212ENST00000477970 EIF3FO00303 357 aaPredicted RBP12.06□□□□□ -0.48
PTPRF-212ENST00000477970 IGSF6O95976 241 aa12.06□□□□□ -0.48
PTPRF-212ENST00000477970 CHRM3P20309 590 aa12.06□□□□□ -0.48
PTPRF-212ENST00000477970 CAPN3P20807 821 aa12.06□□□□□ -0.48
PTPRF-212ENST00000477970 ACRV1P26436 265 aa12.06□□□□□ -0.48
PTPRF-212ENST00000477970 GEN1Q17RS7 908 aa12.06□□□□□ -0.48
PTPRF-212ENST00000477970 C9orf50Q5SZB4 431 aa12.06□□□□□ -0.48
PTPRF-212ENST00000477970 GRAMD4Q6IC98 578 aa12.06□□□□□ -0.48
PTPRF-212ENST00000477970 LCN8Q6JVE9 175 aa12.06□□□□□ -0.48
PTPRF-212ENST00000477970 SPATA24Q86W54 205 aa12.06□□□□□ -0.48
PTPRF-212ENST00000477970 PHOSPHO2Q8TCD6 241 aa12.06□□□□□ -0.48
PTPRF-212ENST00000477970 PLEKHG4BQ96PX9 1271 aa12.06□□□□□ -0.48
PTPRF-212ENST00000477970 ATP13A3Q9H7F0 1226 aa12.06□□□□□ -0.48
PTPRF-212ENST00000477970 RDH14Q9HBH5 336 aa12.06□□□□□ -0.48
PTPRF-212ENST00000477970 BPIFA1Q9NP55 256 aa12.06□□□□□ -0.48
PTPRF-212ENST00000477970 PLXNB3Q9ULL4 1909 aa12.06□□□□□ -0.48
PTPRF-212ENST00000477970 ANGPT2O15123 496 aa12.06□□□□□ -0.48
PTPRF-212ENST00000477970 ZNF821O75541 412 aaPredicted RBP12.06□□□□□ -0.48
PTPRF-212ENST00000477970 CRCPO75575 148 aa12.06□□□□□ -0.48
PTPRF-212ENST00000477970 STAMBPO95630 424 aa12.06□□□□□ -0.48
PTPRF-212ENST00000477970 ITGALP20701 1170 aa12.06□□□□□ -0.48
PTPRF-212ENST00000477970 CHN2P52757 468 aa12.06□□□□□ -0.48
PTPRF-212ENST00000477970 NFATC2Q13469 925 aa12.06□□□□□ -0.48
PTPRF-212ENST00000477970 PDK3Q15120 406 aa12.06□□□□□ -0.48
PTPRF-212ENST00000477970 FXNQ16595 210 aa12.06□□□□□ -0.48
PTPRF-212ENST00000477970 ATXN7L2Q5T6C5 722 aaPredicted RBP12.06□□□□□ -0.48
PTPRF-212ENST00000477970 TAS2R42Q7RTR8 314 aa12.06□□□□□ -0.48
PTPRF-212ENST00000477970 ST13P4Q8IZP2 240 aaPredicted RBP12.06□□□□□ -0.48
PTPRF-212ENST00000477970 MRPS31Q92665 395 aaKnown RBP12.06□□□□□ -0.48
PTPRF-212ENST00000477970 VOPP1Q96AW1 172 aa12.06□□□□□ -0.48
PTPRF-212ENST00000477970 ECHDC3Q96DC8 303 aa12.06□□□□□ -0.48
PTPRF-212ENST00000477970 EFHD1Q9BUP0 239 aa12.06□□□□□ -0.48
PTPRF-212ENST00000477970 CLPBQ9H078 707 aa12.06□□□□□ -0.48
PTPRF-212ENST00000477970 COPS7BQ9H9Q2 264 aaPredicted RBP12.06□□□□□ -0.48
PTPRF-212ENST00000477970 CD274Q9NZQ7 290 aa12.06□□□□□ -0.48
PTPRF-212ENST00000477970 PTBP2Q9UKA9 531 aaKnown RBP12.06□□□□□ -0.48
PTPRF-212ENST00000477970 PCDHA9Q9Y5H5 950 aa12.06□□□□□ -0.48
PTPRF-212ENST00000477970 A0A1B0GTL3 188 aa12.06□□□□□ -0.48
PTPRF-212ENST00000477970 GIPC1O14908 333 aa12.06□□□□□ -0.48
PTPRF-212ENST00000477970 TEX28O15482 410 aa12.06□□□□□ -0.48
PTPRF-212ENST00000477970 DNAJA2O60884 412 aa12.06□□□□□ -0.48
PTPRF-212ENST00000477970 RNASEH2AO75792 299 aaKnown RBP12.06□□□□□ -0.48
PTPRF-212ENST00000477970 LINC00032P0C843 101 aa12.06□□□□□ -0.48
PTPRF-212ENST00000477970 CBSLP0DN79 551 aa12.06□□□□□ -0.48
PTPRF-212ENST00000477970 CBSP35520 551 aa12.06□□□□□ -0.48
PTPRF-212ENST00000477970 RGS4P49798 205 aa12.06□□□□□ -0.48
PTPRF-212ENST00000477970 ZDHHC20Q5W0Z9 365 aa12.06□□□□□ -0.48
PTPRF-212ENST00000477970 TXNDC8Q6A555 127 aa12.06□□□□□ -0.48
PTPRF-212ENST00000477970 FBXL19Q6PCT2 694 aa12.06□□□□□ -0.48
PTPRF-212ENST00000477970 SERPINA9Q86WD7 417 aa12.06□□□□□ -0.48
PTPRF-212ENST00000477970 DHFR2Q86XF0 187 aa12.06□□□□□ -0.48
PTPRF-212ENST00000477970 PTRH1Q86Y79 214 aaKnown RBP12.06□□□□□ -0.48
PTPRF-212ENST00000477970 APCDD1Q8J025 514 aa12.06□□□□□ -0.48
PTPRF-212ENST00000477970 OR2T34Q8NGX1 318 aa12.06□□□□□ -0.48
PTPRF-212ENST00000477970 OR2T3Q8NH03 318 aa12.06□□□□□ -0.48
PTPRF-212ENST00000477970 SLCO4A1Q96BD0 722 aa12.06□□□□□ -0.48
PTPRF-212ENST00000477970 EPB41L1Q9H4G0 881 aa12.06□□□□□ -0.48
PTPRF-212ENST00000477970 A0A1W2PQ67 120 aa12.05□□□□□ -0.48
PTPRF-212ENST00000477970 SOBPA7XYQ1 873 aa12.05□□□□□ -0.48
PTPRF-212ENST00000477970 NR5A2O00482 541 aa12.05□□□□□ -0.48
PTPRF-212ENST00000477970 RAD51BO15315 384 aa12.05□□□□□ -0.48
PTPRF-212ENST00000477970 PRAMEF1O95521 474 aa12.05□□□□□ -0.48
PTPRF-212ENST00000477970 PRAMEF12O95522 483 aa12.05□□□□□ -0.48
PTPRF-212ENST00000477970 UBTFL6P0CB48 400 aaPredicted RBP12.05□□□□□ -0.48
PTPRF-212ENST00000477970 CTSAP10619 480 aa12.05□□□□□ -0.48
PTPRF-212ENST00000477970 DGKAP23743 735 aa12.05□□□□□ -0.48
PTPRF-212ENST00000477970 SLC7A2P52569 658 aa12.05□□□□□ -0.48
PTPRF-212ENST00000477970 IL23RQ5VWK5 629 aa12.05□□□□□ -0.48
PTPRF-212ENST00000477970 LILRA6Q6PI73 481 aa12.05□□□□□ -0.48
PTPRF-212ENST00000477970 CCDC149Q6ZUS6 474 aa12.05□□□□□ -0.48
PTPRF-212ENST00000477970 GAREM2Q75VX8 874 aa12.05□□□□□ -0.48
PTPRF-212ENST00000477970 RNF148Q8N7C7 305 aa12.05□□□□□ -0.48
PTPRF-212ENST00000477970 ANKFN1Q8N957 763 aa12.05□□□□□ -0.48
PTPRF-212ENST00000477970 CPEB1Q9BZB8 566 aaKnown RBP12.05□□□□□ -0.48
PTPRF-212ENST00000477970 CEP44Q9C0F1 390 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms