RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 ZNF358Q9NW07 568 aa7.85□□□□□ -1.15
USP54-211ENST00000474929 BEX4Q9NWD9 120 aaPredicted RBP7.85□□□□□ -1.15
USP54-211ENST00000474929 GPATCH2LQ9NWQ4 482 aa7.85□□□□□ -1.15
USP54-211ENST00000474929 LHX3Q9UBR4 397 aa7.85□□□□□ -1.15
USP54-211ENST00000474929 UBA2Q9UBT2 640 aaPredicted RBP7.85□□□□□ -1.15
USP54-211ENST00000474929 PPT2Q9UMR5 302 aa7.85□□□□□ -1.15
USP54-211ENST00000474929 C17orf113A0A1B0GUU1 675 aa7.84□□□□□ -1.15
USP54-211ENST00000474929 PRRG2O14669 202 aa7.84□□□□□ -1.15
USP54-211ENST00000474929 INSIG1O15503 277 aa7.84□□□□□ -1.15
USP54-211ENST00000474929 USP1O94782 785 aa7.84□□□□□ -1.15
USP54-211ENST00000474929 ABOP16442 354 aa7.84□□□□□ -1.15
USP54-211ENST00000474929 SCNN1AP37088 669 aa7.84□□□□□ -1.15
USP54-211ENST00000474929 ETV3P41162 512 aa7.84□□□□□ -1.15
USP54-211ENST00000474929 CTSCP53634 463 aa7.84□□□□□ -1.15
USP54-211ENST00000474929 AP1S1P61966 158 aa7.84□□□□□ -1.15
USP54-211ENST00000474929 CETN1Q12798 172 aa7.84□□□□□ -1.15
USP54-211ENST00000474929 TAF5Q15542 800 aa7.84□□□□□ -1.15
USP54-211ENST00000474929 GPR19Q15760 415 aa7.84□□□□□ -1.15
USP54-211ENST00000474929 FOXD4L6Q3SYB3 417 aaPredicted RBP7.84□□□□□ -1.15
USP54-211ENST00000474929 TMEM211Q6ICI0 200 aa7.84□□□□□ -1.15
USP54-211ENST00000474929 HMBOX1Q6NT76 420 aa7.84□□□□□ -1.15
USP54-211ENST00000474929 RWDD4Q6NW29 188 aaKnown RBP7.84□□□□□ -1.15
USP54-211ENST00000474929 OLFML1Q6UWY5 402 aa7.84□□□□□ -1.15
USP54-211ENST00000474929 FOXD4L3Q6VB84 417 aaPredicted RBP7.84□□□□□ -1.15
USP54-211ENST00000474929 LEKR1Q6ZMV7 388 aa7.84□□□□□ -1.15
USP54-211ENST00000474929 PPP1R32Q7Z5V6 425 aa7.84□□□□□ -1.15
USP54-211ENST00000474929 NLRP14Q86W24 1093 aa7.84□□□□□ -1.15
USP54-211ENST00000474929 ZSWIM9Q86XI8 627 aa7.84□□□□□ -1.15
USP54-211ENST00000474929 RAVER1Q8IY67 606 aaKnown RBP7.84□□□□□ -1.15
USP54-211ENST00000474929 PPM1KQ8N3J5 372 aa7.84□□□□□ -1.15
USP54-211ENST00000474929 AP2M1Q96CW1 435 aa7.84□□□□□ -1.15
USP54-211ENST00000474929 TBC1D31Q96DN5 1066 aa7.84□□□□□ -1.15
USP54-211ENST00000474929 COX14Q96I36 57 aa7.84□□□□□ -1.15
USP54-211ENST00000474929 ZSWIM1Q9BR11 485 aa7.84□□□□□ -1.15
USP54-211ENST00000474929 MENTQ9BUN1 341 aa7.84□□□□□ -1.15
USP54-211ENST00000474929 AP1M1Q9BXS5 423 aa7.84□□□□□ -1.15
USP54-211ENST00000474929 OSGEPL1Q9H4B0 414 aa7.84□□□□□ -1.15
USP54-211ENST00000474929 SYNCQ9H7C4 482 aa7.84□□□□□ -1.15
USP54-211ENST00000474929 SLC6A20Q9NP91 592 aa7.84□□□□□ -1.15
USP54-211ENST00000474929 NPDC1Q9NQX5 325 aaPredicted RBP7.84□□□□□ -1.15
USP54-211ENST00000474929 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP7.84□□□□□ -1.15
USP54-211ENST00000474929 IL17CQ9P0M4 197 aa7.84□□□□□ -1.15
USP54-211ENST00000474929 DNAI1Q9UI46 699 aa7.84□□□□□ -1.15
USP54-211ENST00000474929 SERTAD3Q9UJW9 196 aa7.84□□□□□ -1.15
USP54-211ENST00000474929 FBXL4Q9UKA2 621 aa7.84□□□□□ -1.15
USP54-211ENST00000474929 DNPEPQ9ULA0 475 aa7.84□□□□□ -1.15
USP54-211ENST00000474929 TMEM98Q9Y2Y6 226 aa7.84□□□□□ -1.15
USP54-211ENST00000474929 MRPS2Q9Y399 296 aaKnown RBP7.84□□□□□ -1.15
USP54-211ENST00000474929 SONP18583 2426 aaKnown RBP7.84□□□□□ -1.15
USP54-211ENST00000474929 CHD3Q12873 2000 aaKnown RBP7.84□□□□□ -1.15
USP54-211ENST00000474929 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP7.83□□□□□ -1.16
USP54-211ENST00000474929 CCDC78A2IDD5 438 aa7.83□□□□□ -1.16
USP54-211ENST00000474929 PDZK1P1A8MUH7 402 aa7.83□□□□□ -1.16
USP54-211ENST00000474929 E7EQ34 232 aa7.83□□□□□ -1.16
USP54-211ENST00000474929 MATN2O00339 956 aa7.83□□□□□ -1.16
USP54-211ENST00000474929 SOCS5O75159 536 aa7.83□□□□□ -1.16
USP54-211ENST00000474929 GRAP2O75791 330 aa7.83□□□□□ -1.16
USP54-211ENST00000474929 ZNF202O95125 648 aa7.83□□□□□ -1.16
USP54-211ENST00000474929 UQCRHP07919 91 aa7.83□□□□□ -1.16
USP54-211ENST00000474929 BMP7P18075 431 aa7.83□□□□□ -1.16
USP54-211ENST00000474929 ITGAXP20702 1163 aa7.83□□□□□ -1.16
USP54-211ENST00000474929 MMP11P24347 488 aa7.83□□□□□ -1.16
USP54-211ENST00000474929 MST1P26927 711 aa7.83□□□□□ -1.16
USP54-211ENST00000474929 HALP42357 657 aa7.83□□□□□ -1.16
USP54-211ENST00000474929 AP2B1P63010 937 aa7.83□□□□□ -1.16
USP54-211ENST00000474929 GCNT1Q02742 428 aa7.83□□□□□ -1.16
USP54-211ENST00000474929 RUNX1T1Q06455 604 aa7.83□□□□□ -1.16
USP54-211ENST00000474929 GPR18Q14330 331 aa7.83□□□□□ -1.16
USP54-211ENST00000474929 PTCHD3Q3KNS1 767 aa7.83□□□□□ -1.16
USP54-211ENST00000474929 SLC25A52Q3SY17 297 aa7.83□□□□□ -1.16
USP54-211ENST00000474929 TUBB8Q3ZCM7 444 aa7.83□□□□□ -1.16
USP54-211ENST00000474929 DCAF17Q5H9S7 520 aaPredicted RBP7.83□□□□□ -1.16
USP54-211ENST00000474929 FAM69BQ5VUD6 431 aa7.83□□□□□ -1.16
USP54-211ENST00000474929 OTUD1Q5VV17 481 aaPredicted RBP7.83□□□□□ -1.16
USP54-211ENST00000474929 TCERG1LQ5VWI1 586 aa7.83□□□□□ -1.16
USP54-211ENST00000474929 MLIPQ5VWP3 458 aa7.83□□□□□ -1.16
USP54-211ENST00000474929 LCN10Q6JVE6 187 aa7.83□□□□□ -1.16
USP54-211ENST00000474929 ARMC6Q6NXE6 501 aa7.83□□□□□ -1.16
USP54-211ENST00000474929 USP45Q70EL2 814 aa7.83□□□□□ -1.16
USP54-211ENST00000474929 OOSP2Q86WS3 158 aa7.83□□□□□ -1.16
USP54-211ENST00000474929 GPR135Q8IZ08 494 aa7.83□□□□□ -1.16
USP54-211ENST00000474929 NDUFAF2Q8N183 169 aa7.83□□□□□ -1.16
USP54-211ENST00000474929 SPDYE1Q8NFV5 336 aaPredicted RBP7.83□□□□□ -1.16
USP54-211ENST00000474929 AGAP11Q8TF27 550 aa7.83□□□□□ -1.16
USP54-211ENST00000474929 HAS2Q92819 552 aa7.83□□□□□ -1.16
USP54-211ENST00000474929 NT5C3BQ969T7 300 aa7.83□□□□□ -1.16
USP54-211ENST00000474929 CCDC47Q96A33 483 aaKnown RBP7.83□□□□□ -1.16
USP54-211ENST00000474929 GPR137Q96N19 417 aa7.83□□□□□ -1.16
USP54-211ENST00000474929 DMRTA2Q96SC8 542 aa7.83□□□□□ -1.16
USP54-211ENST00000474929 CARD9Q9H257 536 aa7.83□□□□□ -1.16
USP54-211ENST00000474929 METTL14Q9HCE5 456 aaKnown RBP7.83□□□□□ -1.16
USP54-211ENST00000474929 SLC40A1Q9NP59 571 aa7.83□□□□□ -1.16
USP54-211ENST00000474929 RASSF1Q9NS23 344 aa7.83□□□□□ -1.16
USP54-211ENST00000474929 IFT80Q9P2H3 777 aaPredicted RBP7.83□□□□□ -1.16
USP54-211ENST00000474929 MKL2Q9ULH7 1088 aa7.83□□□□□ -1.16
USP54-211ENST00000474929 MTMR6Q9Y217 621 aa7.83□□□□□ -1.16
USP54-211ENST00000474929 SNX10Q9Y5X0 201 aa7.83□□□□□ -1.16
USP54-211ENST00000474929 CLIC4Q9Y696 253 aa7.83□□□□□ -1.16
USP54-211ENST00000474929 AP1M2Q9Y6Q5 423 aa7.83□□□□□ -1.16
USP54-211ENST00000474929 CUBNO60494 3623 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms