RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 MARCH4Q9P2E8 410 aaPredicted RBP11.48□□□□□ -0.57
CUX1-207ENST00000465461 LRIT1Q9P2V4 623 aa11.48□□□□□ -0.57
CUX1-207ENST00000465461 CDC23Q9UJX2 597 aa11.48□□□□□ -0.57
CUX1-207ENST00000465461 SOX13Q9UN79 622 aa11.48□□□□□ -0.57
CUX1-207ENST00000465461 WASF3Q9UPY6 502 aa11.48□□□□□ -0.57
CUX1-207ENST00000465461 WDR37Q9Y2I8 494 aa11.48□□□□□ -0.57
CUX1-207ENST00000465461 PCDHGA1Q9Y5H4 931 aa11.48□□□□□ -0.57
CUX1-207ENST00000465461 ZFC3H1O60293 1989 aaKnown RBP11.47□□□□□ -0.57
CUX1-207ENST00000465461 SDR42E2A6NKP2 422 aa11.47□□□□□ -0.57
CUX1-207ENST00000465461 EFCAB8A8MWE9 144 aa11.47□□□□□ -0.57
CUX1-207ENST00000465461 GPR89AB7ZAQ6 455 aa11.47□□□□□ -0.57
CUX1-207ENST00000465461 AP3B1O00203 1094 aa11.47□□□□□ -0.57
CUX1-207ENST00000465461 PPM1DO15297 605 aa11.47□□□□□ -0.57
CUX1-207ENST00000465461 VAPBO95292 243 aa11.47□□□□□ -0.57
CUX1-207ENST00000465461 GPR89BP0CG08 455 aa11.47□□□□□ -0.57
CUX1-207ENST00000465461 ATP1B2P14415 290 aaPredicted RBP11.47□□□□□ -0.57
CUX1-207ENST00000465461 ARNTP27540 789 aa11.47□□□□□ -0.57
CUX1-207ENST00000465461 CCL7P80098 99 aa11.47□□□□□ -0.57
CUX1-207ENST00000465461 DHX9Q08211 1270 aaKnown RBP11.47□□□□□ -0.57
CUX1-207ENST00000465461 LAMB3Q13751 1172 aa11.47□□□□□ -0.57
CUX1-207ENST00000465461 DHX34Q14147 1143 aaKnown RBP11.47□□□□□ -0.57
CUX1-207ENST00000465461 GPR33Q49SQ1 333 aa11.47□□□□□ -0.57
CUX1-207ENST00000465461 FASTKD1Q53R41 847 aaKnown RBP11.47□□□□□ -0.57
CUX1-207ENST00000465461 HES3Q5TGS1 186 aa11.47□□□□□ -0.57
CUX1-207ENST00000465461 AFTPHQ6ULP2 937 aa11.47□□□□□ -0.57
CUX1-207ENST00000465461 XKR5Q6UX68 686 aa11.47□□□□□ -0.57
CUX1-207ENST00000465461 NAPRTQ6XQN6 538 aa11.47□□□□□ -0.57
CUX1-207ENST00000465461 SYDE1Q6ZW31 735 aaPredicted RBP11.47□□□□□ -0.57
CUX1-207ENST00000465461 NLRP9Q7RTR0 991 aa11.47□□□□□ -0.57
CUX1-207ENST00000465461 AMZ2Q86W34 360 aa11.47□□□□□ -0.57
CUX1-207ENST00000465461 C17orf82Q86X59 251 aaPredicted RBP11.47□□□□□ -0.57
CUX1-207ENST00000465461 SLC37A2Q8TED4 501 aa11.47□□□□□ -0.57
CUX1-207ENST00000465461 SIGLEC10Q96LC7 697 aa11.47□□□□□ -0.57
CUX1-207ENST00000465461 C19orf43Q9BQ61 176 aa11.47□□□□□ -0.57
CUX1-207ENST00000465461 TIMM29Q9BSF4 260 aa11.47□□□□□ -0.57
CUX1-207ENST00000465461 ZCCHC2Q9C0B9 1178 aaKnown RBP11.47□□□□□ -0.57
CUX1-207ENST00000465461 DPH5Q9H2P9 285 aa11.47□□□□□ -0.57
CUX1-207ENST00000465461 RIMKLBQ9ULI2 386 aa11.47□□□□□ -0.57
CUX1-207ENST00000465461 PSMD13Q9UNM6 376 aa11.47□□□□□ -0.57
CUX1-207ENST00000465461 MAD1L1Q9Y6D9 718 aa11.47□□□□□ -0.57
CUX1-207ENST00000465461 GOLGA4Q13439 2230 aaKnown RBP11.47□□□□□ -0.57
CUX1-207ENST00000465461 PTPRBP23467 1997 aa11.47□□□□□ -0.57
CUX1-207ENST00000465461 ASXL3Q9C0F0 2248 aa11.46□□□□□ -0.57
CUX1-207ENST00000465461 IGLV3-16A0A075B6K0 115 aa11.46□□□□□ -0.57
CUX1-207ENST00000465461 A6NCN8 305 aa11.46□□□□□ -0.57
CUX1-207ENST00000465461 PRR19A6NJB7 356 aa11.46□□□□□ -0.57
CUX1-207ENST00000465461 PDZK1P1A8MUH7 402 aa11.46□□□□□ -0.57
CUX1-207ENST00000465461 AGRPO00253 132 aa11.46□□□□□ -0.57
CUX1-207ENST00000465461 TP73O15350 636 aa11.46□□□□□ -0.57
CUX1-207ENST00000465461 CD3EAPO15446 510 aaKnown RBP11.46□□□□□ -0.57
CUX1-207ENST00000465461 OPA1O60313 960 aa11.46□□□□□ -0.57
CUX1-207ENST00000465461 TRIM16O95361 564 aa11.46□□□□□ -0.57
CUX1-207ENST00000465461 RPLP0P05388 317 aaKnown RBP11.46□□□□□ -0.57
CUX1-207ENST00000465461 POLBP06746 335 aa11.46□□□□□ -0.57
CUX1-207ENST00000465461 RALBP11234 206 aa11.46□□□□□ -0.57
CUX1-207ENST00000465461 MLNP12872 115 aa11.46□□□□□ -0.57
CUX1-207ENST00000465461 BRAFP15056 766 aa11.46□□□□□ -0.57
CUX1-207ENST00000465461 GLB1P16278 677 aa11.46□□□□□ -0.57
CUX1-207ENST00000465461 ITGB6P18564 788 aa11.46□□□□□ -0.57
CUX1-207ENST00000465461 MAGEA3P43357 314 aa11.46□□□□□ -0.57
CUX1-207ENST00000465461 RPL21P46778 160 aaKnown RBP11.46□□□□□ -0.57
CUX1-207ENST00000465461 OR1D5P58170 312 aa11.46□□□□□ -0.57
CUX1-207ENST00000465461 ILKQ13418 452 aa11.46□□□□□ -0.57
CUX1-207ENST00000465461 CLCA4Q14CN2 919 aa11.46□□□□□ -0.57
CUX1-207ENST00000465461 TRADDQ15628 312 aa11.46□□□□□ -0.57
CUX1-207ENST00000465461 BBS9Q3SYG4 887 aa11.46□□□□□ -0.57
CUX1-207ENST00000465461 NKAIN2Q5VXU1 208 aa11.46□□□□□ -0.57
CUX1-207ENST00000465461 HIBCHQ6NVY1 386 aaPredicted RBP11.46□□□□□ -0.57
CUX1-207ENST00000465461 IYDQ6PHW0 289 aa11.46□□□□□ -0.57
CUX1-207ENST00000465461 PCGF5Q86SE9 256 aa11.46□□□□□ -0.57
CUX1-207ENST00000465461 IGDCC3Q8IVU1 814 aa11.46□□□□□ -0.57
CUX1-207ENST00000465461 CFAP206Q8IYR0 622 aa11.46□□□□□ -0.57
CUX1-207ENST00000465461 UNC5BQ8IZJ1 945 aa11.46□□□□□ -0.57
CUX1-207ENST00000465461 OTUD6BQ8N6M0 293 aa11.46□□□□□ -0.57
CUX1-207ENST00000465461 ZNF669Q96BR6 464 aaPredicted RBP11.46□□□□□ -0.57
CUX1-207ENST00000465461 ABCG4Q9H172 646 aa11.46□□□□□ -0.57
CUX1-207ENST00000465461 MRM3Q9HC36 420 aaKnown RBP11.46□□□□□ -0.57
CUX1-207ENST00000465461 XAB2Q9HCS7 855 aaKnown RBP11.46□□□□□ -0.57
CUX1-207ENST00000465461 CATSPERZQ9NTU4 200 aa11.46□□□□□ -0.57
CUX1-207ENST00000465461 EVA1BQ9NVM1 165 aa11.46□□□□□ -0.57
CUX1-207ENST00000465461 NCKIPSDQ9NZQ3 722 aa11.46□□□□□ -0.57
CUX1-207ENST00000465461 SAMD15Q9P1V8 674 aa11.46□□□□□ -0.57
CUX1-207ENST00000465461 ATXN7L1Q9ULK2 861 aaPredicted RBP11.46□□□□□ -0.57
CUX1-207ENST00000465461 RP1P56715 2156 aa11.45□□□□□ -0.58
CUX1-207ENST00000465461 A0A1W2PQM1 296 aa11.45□□□□□ -0.58
CUX1-207ENST00000465461 OR52A4PA6NMU1 304 aa11.45□□□□□ -0.58
CUX1-207ENST00000465461 RHPN2P1A8MT19 583 aa11.45□□□□□ -0.58
CUX1-207ENST00000465461 IQCF5A8MTL0 148 aa11.45□□□□□ -0.58
CUX1-207ENST00000465461 CFAP99D6REC4 459 aa11.45□□□□□ -0.58
CUX1-207ENST00000465461 B4GAT1O43505 415 aa11.45□□□□□ -0.58
CUX1-207ENST00000465461 SEC31AO94979 1220 aaKnown RBP11.45□□□□□ -0.58
CUX1-207ENST00000465461 MT-CO3P00414 261 aa11.45□□□□□ -0.58
CUX1-207ENST00000465461 GP1BAP07359 652 aa11.45□□□□□ -0.58
CUX1-207ENST00000465461 F3P13726 295 aa11.45□□□□□ -0.58
CUX1-207ENST00000465461 JUPP14923 745 aa11.45□□□□□ -0.58
CUX1-207ENST00000465461 IDSP22304 550 aa11.45□□□□□ -0.58
CUX1-207ENST00000465461 ALDH4A1P30038 563 aa11.45□□□□□ -0.58
CUX1-207ENST00000465461 ARCN1P48444 511 aaKnown RBP11.45□□□□□ -0.58
CUX1-207ENST00000465461 PRLHRP49683 370 aa11.45□□□□□ -0.58
CUX1-207ENST00000465461 CLCNKAP51800 687 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms