RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 NSMCE4AQ9NXX6 385 aa10.85□□□□□ -0.67
SCN9A-205ENST00000454569 ATXN10Q9UBB4 475 aa10.85□□□□□ -0.67
SCN9A-205ENST00000454569 ZBTB32Q9Y2Y4 487 aaPredicted RBP10.85□□□□□ -0.67
SCN9A-205ENST00000454569 VWA7Q9Y334 891 aa10.85□□□□□ -0.67
SCN9A-205ENST00000454569 PRKAB1Q9Y478 270 aa10.85□□□□□ -0.67
SCN9A-205ENST00000454569 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa10.84□□□□□ -0.67
SCN9A-205ENST00000454569 IQANK1A0A1B0GTG1 560 aa10.84□□□□□ -0.67
SCN9A-205ENST00000454569 TMEM202A6NGA9 273 aa10.84□□□□□ -0.67
SCN9A-205ENST00000454569 OR2AG2A6NM03 316 aa10.84□□□□□ -0.67
SCN9A-205ENST00000454569 HMGB1P1B2RPK0 211 aaPredicted RBP10.84□□□□□ -0.67
SCN9A-205ENST00000454569 PRMT5O14744 637 aaPredicted RBP10.84□□□□□ -0.67
SCN9A-205ENST00000454569 SCAMP1O15126 338 aa10.84□□□□□ -0.67
SCN9A-205ENST00000454569 POLR3GO15318 223 aaPredicted RBP10.84□□□□□ -0.67
SCN9A-205ENST00000454569 LILRB5O75023 590 aa10.84□□□□□ -0.67
SCN9A-205ENST00000454569 KRT37O76014 449 aa10.84□□□□□ -0.67
SCN9A-205ENST00000454569 WISP3O95389 354 aaPredicted RBP10.84□□□□□ -0.67
SCN9A-205ENST00000454569 MT-ND3P03897 115 aa10.84□□□□□ -0.67
SCN9A-205ENST00000454569 C2P06681 752 aa10.84□□□□□ -0.67
SCN9A-205ENST00000454569 SLC35E2BP0CK96 405 aa10.84□□□□□ -0.67
SCN9A-205ENST00000454569 ZNF8P17098 575 aaPredicted RBP10.84□□□□□ -0.67
SCN9A-205ENST00000454569 KRT4P19013 534 aa10.84□□□□□ -0.67
SCN9A-205ENST00000454569 FDXRP22570 491 aa10.84□□□□□ -0.67
SCN9A-205ENST00000454569 OXTRP30559 389 aa10.84□□□□□ -0.67
SCN9A-205ENST00000454569 CBX1P83916 185 aa10.84□□□□□ -0.67
SCN9A-205ENST00000454569 CSTF1Q05048 431 aaKnown RBP10.84□□□□□ -0.67
SCN9A-205ENST00000454569 USP10Q14694 798 aaKnown RBP10.84□□□□□ -0.67
SCN9A-205ENST00000454569 ZKSCAN8Q15776 578 aaPredicted RBP10.84□□□□□ -0.67
SCN9A-205ENST00000454569 DESI1Q6ICB0 168 aa10.84□□□□□ -0.67
SCN9A-205ENST00000454569 DOK6Q6PKX4 331 aa10.84□□□□□ -0.67
SCN9A-205ENST00000454569 ADAMTSL4Q6UY14 1074 aa10.84□□□□□ -0.67
SCN9A-205ENST00000454569 ZNF547Q8IVP9 402 aa10.84□□□□□ -0.67
SCN9A-205ENST00000454569 TMEFF1Q8IYR6 380 aa10.84□□□□□ -0.67
SCN9A-205ENST00000454569 RBFAQ8N0V3 343 aa10.84□□□□□ -0.67
SCN9A-205ENST00000454569 LILRA3Q8N6C8 439 aaPredicted RBP10.84□□□□□ -0.67
SCN9A-205ENST00000454569 DTWD2Q8NBA8 298 aa10.84□□□□□ -0.67
SCN9A-205ENST00000454569 SIDT2Q8NBJ9 832 aaKnown RBP10.84□□□□□ -0.67
SCN9A-205ENST00000454569 ASB12Q8WXK4 309 aa10.84□□□□□ -0.67
SCN9A-205ENST00000454569 ISL2Q96A47 359 aa10.84□□□□□ -0.67
SCN9A-205ENST00000454569 ULK4Q96C45 1275 aa10.84□□□□□ -0.67
SCN9A-205ENST00000454569 HIC2Q96JB3 615 aa10.84□□□□□ -0.67
SCN9A-205ENST00000454569 GPR21Q99679 349 aa10.84□□□□□ -0.67
SCN9A-205ENST00000454569 APOOQ9BUR5 198 aa10.84□□□□□ -0.67
SCN9A-205ENST00000454569 OR2AG1Q9H205 316 aa10.84□□□□□ -0.67
SCN9A-205ENST00000454569 PPCSQ9HAB8 311 aa10.84□□□□□ -0.67
SCN9A-205ENST00000454569 MRPL40Q9NQ50 206 aaKnown RBP10.84□□□□□ -0.67
SCN9A-205ENST00000454569 GULP1Q9UBP9 304 aa10.84□□□□□ -0.67
SCN9A-205ENST00000454569 IKZF3Q9UKT9 509 aa10.84□□□□□ -0.67
SCN9A-205ENST00000454569 METTL12A8MUP2 240 aa10.83□□□□□ -0.68
SCN9A-205ENST00000454569 LAMTOR5O43504 91 aa10.83□□□□□ -0.68
SCN9A-205ENST00000454569 ATP1B2P14415 290 aaPredicted RBP10.83□□□□□ -0.68
SCN9A-205ENST00000454569 ZNF7P17097 686 aaPredicted RBP10.83□□□□□ -0.68
SCN9A-205ENST00000454569 RPS3P23396 243 aaKnown RBP eCLIP10.83□□□□□ -0.68
SCN9A-205ENST00000454569 TYK2P29597 1187 aa10.83□□□□□ -0.68
SCN9A-205ENST00000454569 AKT1P31749 480 aa10.83□□□□□ -0.68
SCN9A-205ENST00000454569 CCR7P32248 378 aa10.83□□□□□ -0.68
SCN9A-205ENST00000454569 MAGEA9P43362 315 aa10.83□□□□□ -0.68
SCN9A-205ENST00000454569 CCR5P51681 352 aa10.83□□□□□ -0.68
SCN9A-205ENST00000454569 CLCN7P51798 805 aa10.83□□□□□ -0.68
SCN9A-205ENST00000454569 GYS2P54840 703 aa10.83□□□□□ -0.68
SCN9A-205ENST00000454569 ADARP55265 1226 aaKnown RBP10.83□□□□□ -0.68
SCN9A-205ENST00000454569 SLC18A2Q05940 514 aa10.83□□□□□ -0.68
SCN9A-205ENST00000454569 VAC14Q08AM6 782 aa10.83□□□□□ -0.68
SCN9A-205ENST00000454569 SFSWAPQ12872 951 aaKnown RBP10.83□□□□□ -0.68
SCN9A-205ENST00000454569 ITIH4Q14624 930 aa10.83□□□□□ -0.68
SCN9A-205ENST00000454569 AARS2Q5JTZ9 985 aaKnown RBP10.83□□□□□ -0.68
SCN9A-205ENST00000454569 TMEM220Q6QAJ8 160 aa10.83□□□□□ -0.68
SCN9A-205ENST00000454569 PAQR3Q6TCH7 311 aa10.83□□□□□ -0.68
SCN9A-205ENST00000454569 LAYNQ6UX15 382 aa10.83□□□□□ -0.68
SCN9A-205ENST00000454569 FBXL6Q8N531 539 aa10.83□□□□□ -0.68
SCN9A-205ENST00000454569 BANPQ8N9N5 519 aa10.83□□□□□ -0.68
SCN9A-205ENST00000454569 TMEM145Q8NBT3 493 aa10.83□□□□□ -0.68
SCN9A-205ENST00000454569 FOXJ1Q92949 421 aa10.83□□□□□ -0.68
SCN9A-205ENST00000454569 TBRG4Q969Z0 631 aaKnown RBP eCLIP10.83□□□□□ -0.68
SCN9A-205ENST00000454569 IER2Q9BTL4 223 aa10.83□□□□□ -0.68
SCN9A-205ENST00000454569 C1QTNF1Q9BXJ1 281 aa10.83□□□□□ -0.68
SCN9A-205ENST00000454569 SLC13A1Q9BZW2 595 aa10.83□□□□□ -0.68
SCN9A-205ENST00000454569 VPS11Q9H270 941 aa10.83□□□□□ -0.68
SCN9A-205ENST00000454569 TRIM39Q9HCM9 518 aa10.83□□□□□ -0.68
SCN9A-205ENST00000454569 TM7SF3Q9NS93 570 aa10.83□□□□□ -0.68
SCN9A-205ENST00000454569 PCMTD2Q9NV79 361 aa10.83□□□□□ -0.68
SCN9A-205ENST00000454569 EIF2B4Q9UI10 523 aaKnown RBP10.83□□□□□ -0.68
SCN9A-205ENST00000454569 A0A096LPK6 155 aa10.82□□□□□ -0.68
SCN9A-205ENST00000454569 A0A1W2PPC4 97 aa10.82□□□□□ -0.68
SCN9A-205ENST00000454569 TYROBPO43914 113 aa10.82□□□□□ -0.68
SCN9A-205ENST00000454569 NDUFS2O75306 463 aa10.82□□□□□ -0.68
SCN9A-205ENST00000454569 RHOBTB1O94844 696 aa10.82□□□□□ -0.68
SCN9A-205ENST00000454569 TRIM16O95361 564 aa10.82□□□□□ -0.68
SCN9A-205ENST00000454569 WNT1P04628 370 aa10.82□□□□□ -0.68
SCN9A-205ENST00000454569 CEACAM5P06731 702 aa10.82□□□□□ -0.68
SCN9A-205ENST00000454569 MSH3P20585 1137 aa10.82□□□□□ -0.68
SCN9A-205ENST00000454569 HNRNPA2B1P22626 353 aaKnown RBP10.82□□□□□ -0.68
SCN9A-205ENST00000454569 CNTFP26441 200 aa10.82□□□□□ -0.68
SCN9A-205ENST00000454569 AVPR2P30518 371 aa10.82□□□□□ -0.68
SCN9A-205ENST00000454569 HOXA6P31267 233 aa10.82□□□□□ -0.68
SCN9A-205ENST00000454569 CCNFP41002 786 aa10.82□□□□□ -0.68
SCN9A-205ENST00000454569 NSG1P42857 185 aa10.82□□□□□ -0.68
SCN9A-205ENST00000454569 PFN3P60673 137 aa10.82□□□□□ -0.68
SCN9A-205ENST00000454569 POU4F1Q01851 419 aa10.82□□□□□ -0.68
SCN9A-205ENST00000454569 RPL6Q02878 288 aaKnown RBP10.82□□□□□ -0.68
SCN9A-205ENST00000454569 NR6A1Q15406 480 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms