RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 PPM1JQ5JR12 505 aa15.27■□□□□ 0.03
PTPRF-206ENST00000429895 CCSAPQ6IQ19 270 aaPredicted RBP15.27■□□□□ 0.03
PTPRF-206ENST00000429895 GTF2H2CQ6P1K8 395 aa15.27■□□□□ 0.03
PTPRF-206ENST00000429895 TMEM220Q6QAJ8 160 aa15.27■□□□□ 0.03
PTPRF-206ENST00000429895 STRADAQ7RTN6 431 aa15.27■□□□□ 0.03
PTPRF-206ENST00000429895 FBXL16Q8N461 479 aa15.27■□□□□ 0.03
PTPRF-206ENST00000429895 CPSF7Q8N684 471 aaKnown RBP15.27■□□□□ 0.03
PTPRF-206ENST00000429895 PIK3C3Q8NEB9 887 aa15.27■□□□□ 0.03
PTPRF-206ENST00000429895 RBM18Q96H35 190 aaKnown RBP15.27■□□□□ 0.03
PTPRF-206ENST00000429895 GAL3ST1Q99999 423 aa15.27■□□□□ 0.03
PTPRF-206ENST00000429895 SRMSQ9H3Y6 488 aa15.27■□□□□ 0.03
PTPRF-206ENST00000429895 MCCC2Q9HCC0 563 aa15.27■□□□□ 0.03
PTPRF-206ENST00000429895 PNPLA3Q9NST1 481 aa15.27■□□□□ 0.03
PTPRF-206ENST00000429895 CPQQ9Y646 472 aa15.27■□□□□ 0.03
PTPRF-206ENST00000429895 AP4B1Q9Y6B7 739 aa15.27■□□□□ 0.03
PTPRF-206ENST00000429895 AHCYP23526 432 aa15.26■□□□□ 0.03
PTPRF-206ENST00000429895 PPP2R2DQ66LE6 453 aa15.26■□□□□ 0.03
PTPRF-206ENST00000429895 ABHD15Q6UXT9 468 aa15.26■□□□□ 0.03
PTPRF-206ENST00000429895 PRR23BQ6ZRT6 265 aa15.26■□□□□ 0.03
PTPRF-206ENST00000429895 NKD1Q969G9 470 aa15.26■□□□□ 0.03
PTPRF-206ENST00000429895 MAML3Q96JK9 1138 aa15.26■□□□□ 0.03
PTPRF-206ENST00000429895 PCDHB18PQ96TA0 734 aa15.26■□□□□ 0.03
PTPRF-206ENST00000429895 HCN3Q9P1Z3 774 aa15.26■□□□□ 0.03
PTPRF-206ENST00000429895 CDH7Q9ULB5 785 aa15.26■□□□□ 0.03
PTPRF-206ENST00000429895 C5orf60A6NFR6 353 aa15.26■□□□□ 0.03
PTPRF-206ENST00000429895 ARL5CA6NH57 179 aa15.26■□□□□ 0.03
PTPRF-206ENST00000429895 LOC110117498-PIK3R3F6TDL0 507 aa15.26■□□□□ 0.03
PTPRF-206ENST00000429895 STK16O75716 305 aa15.26■□□□□ 0.03
PTPRF-206ENST00000429895 FABP3P05413 133 aa15.26■□□□□ 0.03
PTPRF-206ENST00000429895 SLC35G6P0C7Q6 338 aa15.26■□□□□ 0.03
PTPRF-206ENST00000429895 UROSP10746 265 aa15.26■□□□□ 0.03
PTPRF-206ENST00000429895 VPS26BQ4G0F5 336 aa15.26■□□□□ 0.03
PTPRF-206ENST00000429895 TCEAL6Q6IPX3 200 aa15.26■□□□□ 0.03
PTPRF-206ENST00000429895 SMARCD3Q6STE5 483 aa15.26■□□□□ 0.03
PTPRF-206ENST00000429895 ANKRD23Q86SG2 305 aa15.26■□□□□ 0.03
PTPRF-206ENST00000429895 GHDCQ8N2G8 530 aa15.26■□□□□ 0.03
PTPRF-206ENST00000429895 FAM110BQ8TC76 370 aa15.26■□□□□ 0.03
PTPRF-206ENST00000429895 KLHL32Q96NJ5 620 aa15.26■□□□□ 0.03
PTPRF-206ENST00000429895 ABI3Q9P2A4 366 aa15.26■□□□□ 0.03
PTPRF-206ENST00000429895 SLIT1O75093 1534 aa15.26■□□□□ 0.03
PTPRF-206ENST00000429895 RIIAD1A6NNX1 92 aa15.26■□□□□ 0.03
PTPRF-206ENST00000429895 IPO13O94829 963 aaKnown RBP15.26■□□□□ 0.03
PTPRF-206ENST00000429895 ZNF432O94892 652 aa15.26■□□□□ 0.03
PTPRF-206ENST00000429895 NDST3O95803 873 aa15.26■□□□□ 0.03
PTPRF-206ENST00000429895 GRSF1Q12849 480 aaKnown RBP eCLIP15.26■□□□□ 0.031e-18■■■■□ 22.3
PTPRF-206ENST00000429895 PYROXD2Q8N2H3 581 aa15.26■□□□□ 0.03
PTPRF-206ENST00000429895 GSTCDQ8NEC7 633 aa15.26■□□□□ 0.03
PTPRF-206ENST00000429895 DHRS1Q96LJ7 313 aa15.26■□□□□ 0.03
PTPRF-206ENST00000429895 HBEGFQ99075 208 aa15.26■□□□□ 0.03
PTPRF-206ENST00000429895 SPATA9Q9BWV2 254 aa15.26■□□□□ 0.03
PTPRF-206ENST00000429895 OSBPL11Q9BXB4 747 aa15.26■□□□□ 0.03
PTPRF-206ENST00000429895 TNFRSF11BO00300 401 aa15.26■□□□□ 0.03
PTPRF-206ENST00000429895 ATXN7L2Q5T6C5 722 aaPredicted RBP15.26■□□□□ 0.03
PTPRF-206ENST00000429895 SERPINA9Q86WD7 417 aa15.26■□□□□ 0.03
PTPRF-206ENST00000429895 HDDC3Q8N4P3 179 aa15.26■□□□□ 0.03
PTPRF-206ENST00000429895 TSPAN18Q96SJ8 248 aa15.26■□□□□ 0.03
PTPRF-206ENST00000429895 PDZD7Q9H5P4 517 aa15.26■□□□□ 0.03
PTPRF-206ENST00000429895 RIPK3Q9Y572 518 aa15.26■□□□□ 0.03
PTPRF-206ENST00000429895 CFIP05156 583 aa15.26■□□□□ 0.03
PTPRF-206ENST00000429895 NOMO1Q15155 1222 aa15.26■□□□□ 0.03
PTPRF-206ENST00000429895 IL23RQ5VWK5 629 aa15.26■□□□□ 0.03
PTPRF-206ENST00000429895 ANKRD46Q86W74 232 aa15.26■□□□□ 0.03
PTPRF-206ENST00000429895 CHERPQ8IWX8 916 aaKnown RBP15.26■□□□□ 0.03
PTPRF-206ENST00000429895 FAM192AQ9GZU8 254 aa15.26■□□□□ 0.03
PTPRF-206ENST00000429895 ZNF208O43345 1280 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 UGT2B11O75310 529 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 BPGMP07738 259 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 COL6A1P12109 1028 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 CD247P20963 164 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 TTKP33981 857 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 RPS6KA3P51812 740 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 ENPEPQ07075 957 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 CROCCP3Q8IVE0 287 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 LNX2Q8N448 690 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 STYXQ8WUJ0 223 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 C11orf16Q9NQ32 467 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 MIOSQ9NXC5 875 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 WRBO00258 174 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 TSPAN1O60635 241 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 C2P06681 752 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 RHOQP17081 205 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 FAUP35544 74 aaKnown RBP15.25■□□□□ 0.03
PTPRF-206ENST00000429895 DGKGP49619 791 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 CDH4P55283 916 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 LPCAT4Q643R3 524 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 LIX1Q8N485 282 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 GSDMCQ9BYG8 508 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 CACNG4Q9UBN1 327 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 TGFB1I1O43294 461 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 MT-ND1P03886 318 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 IGFBP5P24593 272 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 FKBP1BP68106 108 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 CBX3Q13185 183 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 EIF1ADQ8N9N8 165 aaKnown RBP15.25■□□□□ 0.03
PTPRF-206ENST00000429895 DQX1Q8TE96 717 aaKnown RBP15.25■□□□□ 0.03
PTPRF-206ENST00000429895 RIPOR3Q96MK2 946 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 GBA3Q9H227 469 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 LHX5Q9H2C1 402 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 A0A1W2PQ67 120 aa15.25■□□□□ 0.03
PTPRF-206ENST00000429895 IRGMA1A4Y4 181 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms