RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 DUSP3P51452 185 aaPredicted RBP12.29□□□□□ -0.44
SKA1-203ENST00000417656 FOXC1Q12948 553 aa12.29□□□□□ -0.44
SKA1-203ENST00000417656 BCL7AQ4VC05 210 aa12.29□□□□□ -0.44
SKA1-203ENST00000417656 C14orf28Q4W4Y0 310 aa12.29□□□□□ -0.44
SKA1-203ENST00000417656 HIBCHQ6NVY1 386 aaPredicted RBP12.29□□□□□ -0.44
SKA1-203ENST00000417656 TMEM220Q6QAJ8 160 aa12.29□□□□□ -0.44
SKA1-203ENST00000417656 NAGSQ8N159 534 aa12.29□□□□□ -0.44
SKA1-203ENST00000417656 OTUD6BQ8N6M0 293 aa12.29□□□□□ -0.44
SKA1-203ENST00000417656 GPR156Q8NFN8 814 aa12.29□□□□□ -0.44
SKA1-203ENST00000417656 OR4L1Q8NH43 312 aa12.29□□□□□ -0.44
SKA1-203ENST00000417656 KIF18AQ8NI77 898 aa12.29□□□□□ -0.44
SKA1-203ENST00000417656 IFI44Q8TCB0 444 aa12.29□□□□□ -0.44
SKA1-203ENST00000417656 GLMNQ92990 594 aa12.29□□□□□ -0.44
SKA1-203ENST00000417656 SGF29Q96ES7 293 aa12.29□□□□□ -0.44
SKA1-203ENST00000417656 CATSPERZQ9NTU4 200 aa12.29□□□□□ -0.44
SKA1-203ENST00000417656 NCKIPSDQ9NZQ3 722 aa12.29□□□□□ -0.44
SKA1-203ENST00000417656 FAM8A1Q9UBU6 413 aa12.29□□□□□ -0.44
SKA1-203ENST00000417656 TBC1D29Q9UFV1 150 aa12.29□□□□□ -0.44
SKA1-203ENST00000417656 PADI4Q9UM07 663 aa12.29□□□□□ -0.44
SKA1-203ENST00000417656 MAD1L1Q9Y6D9 718 aa12.29□□□□□ -0.44
SKA1-203ENST00000417656 SPTBN2O15020 2390 aa12.28□□□□□ -0.44
SKA1-203ENST00000417656 COL27A1Q8IZC6 1860 aaPredicted RBP12.28□□□□□ -0.44
SKA1-203ENST00000417656 GOLGA4Q13439 2230 aaKnown RBP12.28□□□□□ -0.44
SKA1-203ENST00000417656 A6NCN8 305 aa12.28□□□□□ -0.44
SKA1-203ENST00000417656 PRR19A6NJB7 356 aa12.28□□□□□ -0.44
SKA1-203ENST00000417656 TP73O15350 636 aa12.28□□□□□ -0.44
SKA1-203ENST00000417656 VAPBO95292 243 aa12.28□□□□□ -0.44
SKA1-203ENST00000417656 RPIAP49247 311 aa12.28□□□□□ -0.44
SKA1-203ENST00000417656 PRLHRP49683 370 aa12.28□□□□□ -0.44
SKA1-203ENST00000417656 CLDN6P56747 220 aa12.28□□□□□ -0.44
SKA1-203ENST00000417656 DHX9Q08211 1270 aaKnown RBP12.28□□□□□ -0.44
SKA1-203ENST00000417656 HLTFQ14527 1009 aaKnown RBP eCLIP12.28□□□□□ -0.44
SKA1-203ENST00000417656 ITIH4Q14624 930 aa12.28□□□□□ -0.44
SKA1-203ENST00000417656 SEPT7Q16181 437 aaKnown RBP12.28□□□□□ -0.44
SKA1-203ENST00000417656 BBS9Q3SYG4 887 aa12.28□□□□□ -0.44
SKA1-203ENST00000417656 MSS51Q4VC12 460 aa12.28□□□□□ -0.44
SKA1-203ENST00000417656 FASTKD1Q53R41 847 aaKnown RBP12.28□□□□□ -0.44
SKA1-203ENST00000417656 DNAJC21Q5F1R6 531 aaKnown RBP12.28□□□□□ -0.44
SKA1-203ENST00000417656 PERM1Q5SV97 790 aa12.28□□□□□ -0.44
SKA1-203ENST00000417656 ARMC3Q5W041 872 aa12.28□□□□□ -0.44
SKA1-203ENST00000417656 KIAA0930Q6ICG6 404 aaPredicted RBP12.28□□□□□ -0.44
SKA1-203ENST00000417656 C8orf74Q6P047 294 aa12.28□□□□□ -0.44
SKA1-203ENST00000417656 OGFOD3Q6PK18 319 aa12.28□□□□□ -0.44
SKA1-203ENST00000417656 DHRS13Q6UX07 377 aa12.28□□□□□ -0.44
SKA1-203ENST00000417656 ERMP1Q7Z2K6 904 aa12.28□□□□□ -0.44
SKA1-203ENST00000417656 MAATS1Q7Z4T9 603 aa12.28□□□□□ -0.44
SKA1-203ENST00000417656 LDB1Q86U70 411 aaPredicted RBP12.28□□□□□ -0.44
SKA1-203ENST00000417656 HEXDCQ8WVB3 486 aa12.28□□□□□ -0.44
SKA1-203ENST00000417656 CCDC74AQ96AQ1 378 aa12.28□□□□□ -0.44
SKA1-203ENST00000417656 STAMBPL1Q96FJ0 436 aa12.28□□□□□ -0.44
SKA1-203ENST00000417656 SIGLEC10Q96LC7 697 aa12.28□□□□□ -0.44
SKA1-203ENST00000417656 ERP44Q9BS26 406 aa12.28□□□□□ -0.44
SKA1-203ENST00000417656 IL1RAPL1Q9NZN1 696 aa12.28□□□□□ -0.44
SKA1-203ENST00000417656 ANAPC5Q9UJX4 755 aa12.28□□□□□ -0.44
SKA1-203ENST00000417656 PCDHGA1Q9Y5H4 931 aa12.28□□□□□ -0.44
SKA1-203ENST00000417656 PRSS21Q9Y6M0 314 aa12.28□□□□□ -0.44
SKA1-203ENST00000417656 RPS6KL1Q9Y6S9 549 aa12.28□□□□□ -0.44
SKA1-203ENST00000417656 FAM237BA0A1B0GVD1 139 aa12.27□□□□□ -0.45
SKA1-203ENST00000417656 EME2A4GXA9 379 aaPredicted RBP12.27□□□□□ -0.45
SKA1-203ENST00000417656 PDZK1P1A8MUH7 402 aa12.27□□□□□ -0.45
SKA1-203ENST00000417656 GOLGA8KD6RF30 607 aa12.27□□□□□ -0.45
SKA1-203ENST00000417656 GOLGA8TH3BQL2 631 aa12.27□□□□□ -0.45
SKA1-203ENST00000417656 CD3EAPO15446 510 aaKnown RBP12.27□□□□□ -0.45
SKA1-203ENST00000417656 OR1I1O60431 355 aa12.27□□□□□ -0.45
SKA1-203ENST00000417656 POP7O75817 140 aaKnown RBP12.27□□□□□ -0.45
SKA1-203ENST00000417656 TOP3BO95985 862 aaKnown RBP12.27□□□□□ -0.45
SKA1-203ENST00000417656 ADRB1P08588 477 aa12.27□□□□□ -0.45
SKA1-203ENST00000417656 ATP1B2P14415 290 aaPredicted RBP12.27□□□□□ -0.45
SKA1-203ENST00000417656 VCLP18206 1134 aa12.27□□□□□ -0.45
SKA1-203ENST00000417656 PGAM1P18669 254 aa12.27□□□□□ -0.45
SKA1-203ENST00000417656 CLCNKAP51800 687 aa12.27□□□□□ -0.45
SKA1-203ENST00000417656 NFE2L1Q14494 772 aa12.27□□□□□ -0.45
SKA1-203ENST00000417656 ANKRD20A4Q4UJ75 823 aa12.27□□□□□ -0.45
SKA1-203ENST00000417656 AARS2Q5JTZ9 985 aaKnown RBP12.27□□□□□ -0.45
SKA1-203ENST00000417656 DUPD1Q68J44 220 aa12.27□□□□□ -0.45
SKA1-203ENST00000417656 PACS1Q6VY07 963 aa12.27□□□□□ -0.45
SKA1-203ENST00000417656 FAM83HQ6ZRV2 1179 aaPredicted RBP12.27□□□□□ -0.45
SKA1-203ENST00000417656 AMZ2Q86W34 360 aa12.27□□□□□ -0.45
SKA1-203ENST00000417656 CLDN19Q8N6F1 224 aa12.27□□□□□ -0.45
SKA1-203ENST00000417656 SLC37A2Q8TED4 501 aa12.27□□□□□ -0.45
SKA1-203ENST00000417656 ADAMTS14Q8WXS8 1223 aa12.27□□□□□ -0.45
SKA1-203ENST00000417656 NAT6Q93015 286 aa12.27□□□□□ -0.45
SKA1-203ENST00000417656 SGSM3Q96HU1 749 aa12.27□□□□□ -0.45
SKA1-203ENST00000417656 ZNF514Q96K75 400 aaPredicted RBP12.27□□□□□ -0.45
SKA1-203ENST00000417656 FCRL3Q96P31 734 aaPredicted RBP12.27□□□□□ -0.45
SKA1-203ENST00000417656 WDR83Q9BRX9 315 aaKnown RBP12.27□□□□□ -0.45
SKA1-203ENST00000417656 SYNDIG1Q9H7V2 258 aa12.27□□□□□ -0.45
SKA1-203ENST00000417656 PRDM8Q9NQV8 689 aa12.27□□□□□ -0.45
SKA1-203ENST00000417656 GRHL1Q9NZI5 618 aa12.27□□□□□ -0.45
SKA1-203ENST00000417656 RABGEF1Q9UJ41 708 aa12.27□□□□□ -0.45
SKA1-203ENST00000417656 RNF215Q9Y6U7 377 aa12.27□□□□□ -0.45
SKA1-203ENST00000417656 PTPRBP23467 1997 aa12.27□□□□□ -0.45
SKA1-203ENST00000417656 TRBV23OR9-2A0A075B6M9 112 aa12.26□□□□□ -0.45
SKA1-203ENST00000417656 ZCWPW2A0A1B0GU75 182 aa12.26□□□□□ -0.45
SKA1-203ENST00000417656 SMAPO00193 183 aa12.26□□□□□ -0.45
SKA1-203ENST00000417656 CASC3O15234 703 aaKnown RBP12.26□□□□□ -0.45
SKA1-203ENST00000417656 HYAL3O43820 417 aaPredicted RBP12.26□□□□□ -0.45
SKA1-203ENST00000417656 USP1O94782 785 aa12.26□□□□□ -0.45
SKA1-203ENST00000417656 GP1BAP07359 652 aa12.26□□□□□ -0.45
SKA1-203ENST00000417656 F7P08709 466 aaPredicted RBP12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms