RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 TRIP10Q15642 601 aa14.67□□□□□ -0.06
USP4-203ENST00000415188 AARS2Q5JTZ9 985 aaKnown RBP14.67□□□□□ -0.06
USP4-203ENST00000415188 RNF111Q6ZNA4 994 aa14.67□□□□□ -0.06
USP4-203ENST00000415188 LARP4Q71RC2 724 aaKnown RBP eCLIP14.67□□□□□ -0.06
USP4-203ENST00000415188 GLT6D1Q7Z4J2 308 aa14.67□□□□□ -0.06
USP4-203ENST00000415188 PIM3Q86V86 326 aa14.67□□□□□ -0.06
USP4-203ENST00000415188 CFAP52Q8N1V2 620 aa14.67□□□□□ -0.06
USP4-203ENST00000415188 NKAPQ8N5F7 415 aaKnown RBP14.67□□□□□ -0.06
USP4-203ENST00000415188 CELF5Q8N6W0 485 aaKnown RBP14.67□□□□□ -0.06
USP4-203ENST00000415188 PTGR2Q8N8N7 351 aaPredicted RBP14.67□□□□□ -0.06
USP4-203ENST00000415188 ZBTB44Q8NCP5 570 aa14.67□□□□□ -0.06
USP4-203ENST00000415188 OR13C4Q8NGS5 318 aa14.67□□□□□ -0.06
USP4-203ENST00000415188 STAG3L4Q8TBR4 150 aa14.67□□□□□ -0.06
USP4-203ENST00000415188 UCMAQ8WVF2 138 aa14.67□□□□□ -0.06
USP4-203ENST00000415188 LPGAT1Q92604 370 aa14.67□□□□□ -0.06
USP4-203ENST00000415188 NELL1Q92832 810 aa14.67□□□□□ -0.06
USP4-203ENST00000415188 USP13Q92995 863 aaPredicted RBP14.67□□□□□ -0.06
USP4-203ENST00000415188 SPDL1Q96EA4 605 aa14.67□□□□□ -0.06
USP4-203ENST00000415188 C19orf60Q96EN9 201 aa14.67□□□□□ -0.06
USP4-203ENST00000415188 PRICKLE1Q96MT3 831 aaPredicted RBP14.67□□□□□ -0.06
USP4-203ENST00000415188 ATOH8Q96SQ7 321 aa14.67□□□□□ -0.06
USP4-203ENST00000415188 SPON2Q9BUD6 331 aa14.67□□□□□ -0.06
USP4-203ENST00000415188 ADGRE3Q9BY15 652 aa14.67□□□□□ -0.06
USP4-203ENST00000415188 SUDS3Q9H7L9 328 aaPredicted RBP14.67□□□□□ -0.06
USP4-203ENST00000415188 POLR3BQ9NW08 1133 aaPredicted RBP14.67□□□□□ -0.06
USP4-203ENST00000415188 AGO1Q9UL18 857 aaKnown RBP14.67□□□□□ -0.06
USP4-203ENST00000415188 FRYLO94915 3013 aa14.67□□□□□ -0.06
USP4-203ENST00000415188 ZNF292O60281 2723 aa14.67□□□□□ -0.06
USP4-203ENST00000415188 DPPA5A6NC42 116 aa14.66□□□□□ -0.06
USP4-203ENST00000415188 STX16-NPEPL1H3BU86 382 aa14.66□□□□□ -0.06
USP4-203ENST00000415188 STX16O14662 325 aa14.66□□□□□ -0.06
USP4-203ENST00000415188 COCHO43405 550 aa14.66□□□□□ -0.06
USP4-203ENST00000415188 NDUFS3O75489 264 aa14.66□□□□□ -0.06
USP4-203ENST00000415188 STC2O76061 302 aa14.66□□□□□ -0.06
USP4-203ENST00000415188 XRCC1P18887 633 aaPredicted RBP14.66□□□□□ -0.06
USP4-203ENST00000415188 CORO1AP31146 461 aaKnown RBP14.66□□□□□ -0.06
USP4-203ENST00000415188 PLK1P53350 603 aa14.66□□□□□ -0.06
USP4-203ENST00000415188 CEACAM7Q14002 265 aa14.66□□□□□ -0.06
USP4-203ENST00000415188 PON2Q15165 354 aa14.66□□□□□ -0.06
USP4-203ENST00000415188 CYTH1Q15438 398 aa14.66□□□□□ -0.06
USP4-203ENST00000415188 AGKQ53H12 422 aa14.66□□□□□ -0.06
USP4-203ENST00000415188 ADGRF1Q5T601 910 aa14.66□□□□□ -0.06
USP4-203ENST00000415188 IRAK1BP1Q5VVH5 260 aa14.66□□□□□ -0.06
USP4-203ENST00000415188 REP15Q6BDI9 236 aa14.66□□□□□ -0.06
USP4-203ENST00000415188 Q6ZS52 159 aa14.66□□□□□ -0.06
USP4-203ENST00000415188 GK5Q6ZS86 529 aa14.66□□□□□ -0.06
USP4-203ENST00000415188 RALGPS2Q86X27 583 aaPredicted RBP14.66□□□□□ -0.06
USP4-203ENST00000415188 DENND1CQ8IV53 801 aa14.66□□□□□ -0.06
USP4-203ENST00000415188 KIAA2013Q8IYS2 634 aa14.66□□□□□ -0.06
USP4-203ENST00000415188 MRPS31Q92665 395 aaKnown RBP14.66□□□□□ -0.06
USP4-203ENST00000415188 ASB9Q96DX5 294 aa14.66□□□□□ -0.06
USP4-203ENST00000415188 MSANTD3Q96H12 275 aa14.66□□□□□ -0.06
USP4-203ENST00000415188 MARK4Q96L34 752 aa14.66□□□□□ -0.06
USP4-203ENST00000415188 C1QTNF3Q9BXJ4 246 aa14.66□□□□□ -0.06
USP4-203ENST00000415188 FAM192AQ9GZU8 254 aa14.66□□□□□ -0.06
USP4-203ENST00000415188 HPS4Q9NQG7 708 aa14.66□□□□□ -0.06
USP4-203ENST00000415188 GKN1Q9NS71 199 aa14.66□□□□□ -0.06
USP4-203ENST00000415188 STOML2Q9UJZ1 356 aa14.66□□□□□ -0.06
USP4-203ENST00000415188 OAS3Q9Y6K5 1087 aaKnown RBP14.66□□□□□ -0.06
USP4-203ENST00000415188 H7C0S8 307 aa14.65□□□□□ -0.06
USP4-203ENST00000415188 UBFD1O14562 309 aaKnown RBP14.65□□□□□ -0.06
USP4-203ENST00000415188 AZIN1O14977 448 aa14.65□□□□□ -0.06
USP4-203ENST00000415188 CFLARO15519 480 aa14.65□□□□□ -0.06
USP4-203ENST00000415188 LYNP07948 512 aa14.65□□□□□ -0.06
USP4-203ENST00000415188 LINGO3P0C6S8 592 aa14.65□□□□□ -0.06
USP4-203ENST00000415188 DDX6P26196 483 aaKnown RBP eCLIP14.65□□□□□ -0.06
USP4-203ENST00000415188 PEX2P28328 305 aa14.65□□□□□ -0.06
USP4-203ENST00000415188 HSPA13P48723 471 aa14.65□□□□□ -0.06
USP4-203ENST00000415188 MRPL19P49406 292 aaKnown RBP14.65□□□□□ -0.06
USP4-203ENST00000415188 TTPAP49638 278 aa14.65□□□□□ -0.06
USP4-203ENST00000415188 RPS24P62847 133 aaKnown RBP14.65□□□□□ -0.06
USP4-203ENST00000415188 LRP8Q14114 963 aa14.65□□□□□ -0.06
USP4-203ENST00000415188 OR4D1Q15615 310 aa14.65□□□□□ -0.06
USP4-203ENST00000415188 UGT3A2Q3SY77 523 aa14.65□□□□□ -0.06
USP4-203ENST00000415188 MMEL1Q495T6 779 aa14.65□□□□□ -0.06
USP4-203ENST00000415188 KANK2Q63ZY3 851 aa14.65□□□□□ -0.06
USP4-203ENST00000415188 OR52E8Q6IFG1 317 aa14.65□□□□□ -0.06
USP4-203ENST00000415188 PRMT9Q6P2P2 845 aa14.65□□□□□ -0.06
USP4-203ENST00000415188 EFCAB3Q8N7B9 438 aa14.65□□□□□ -0.06
USP4-203ENST00000415188 ICA1LQ8NDH6 482 aa14.65□□□□□ -0.06
USP4-203ENST00000415188 ADCY4Q8NFM4 1077 aa14.65□□□□□ -0.06
USP4-203ENST00000415188 OR52K2Q8NGK3 314 aa14.65□□□□□ -0.06
USP4-203ENST00000415188 ROPN1LQ96C74 230 aa14.65□□□□□ -0.06
USP4-203ENST00000415188 RMDN1Q96DB5 314 aa14.65□□□□□ -0.06
USP4-203ENST00000415188 LRGUKQ96M69 825 aa14.65□□□□□ -0.06
USP4-203ENST00000415188 TRAPPC9Q96Q05 1148 aa14.65□□□□□ -0.06
USP4-203ENST00000415188 SLC22A12Q96S37 553 aa14.65□□□□□ -0.06
USP4-203ENST00000415188 C19orf43Q9BQ61 176 aa14.65□□□□□ -0.06
USP4-203ENST00000415188 FAM83CQ9BQN1 747 aa14.65□□□□□ -0.06
USP4-203ENST00000415188 KLF16Q9BXK1 252 aaPredicted RBP14.65□□□□□ -0.06
USP4-203ENST00000415188 NUSAP1Q9BXS6 441 aaKnown RBP14.65□□□□□ -0.06
USP4-203ENST00000415188 EBF3Q9H4W6 596 aa14.65□□□□□ -0.06
USP4-203ENST00000415188 Q9H521 79 aa14.65□□□□□ -0.06
USP4-203ENST00000415188 PFDN4Q9NQP4 134 aa14.65□□□□□ -0.06
USP4-203ENST00000415188 TDP1Q9NUW8 608 aa14.65□□□□□ -0.06
USP4-203ENST00000415188 C2orf42Q9NWW7 574 aa14.65□□□□□ -0.06
USP4-203ENST00000415188 THG1LQ9NWX6 298 aaKnown RBP14.65□□□□□ -0.06
USP4-203ENST00000415188 CACNA2D2Q9NY47 1150 aa14.65□□□□□ -0.06
USP4-203ENST00000415188 FIS1Q9Y3D6 152 aa14.65□□□□□ -0.06
USP4-203ENST00000415188 DTNAQ9Y4J8 743 aa14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms