RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 NARSO43776 548 aaKnown RBP12.79□□□□□ -0.36
COL6A3-206ENST00000409809 TBX10O75333 385 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 IFNA1P01562 189 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 GNPDA1P46926 289 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 LARS2Q15031 903 aaKnown RBP12.79□□□□□ -0.36
COL6A3-206ENST00000409809 PHF13Q86YI8 300 aaPredicted RBP12.79□□□□□ -0.36
COL6A3-206ENST00000409809 ZDHHC15Q96MV8 337 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 RETREG1Q9H6L5 497 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 KCNH7Q9NS40 1196 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 NFAT5O94916 1531 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 ROBO2Q9HCK4 1378 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 OR2B3O76000 313 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 IGKV5-2P06315 115 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 DNAJA1P31689 397 aaKnown RBP12.78□□□□□ -0.36
COL6A3-206ENST00000409809 TROAPQ12815 778 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 TMEM119Q4V9L6 283 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 ABCA11PQ4W5N1 156 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 MRPL9Q9BYD2 267 aaKnown RBP12.78□□□□□ -0.36
COL6A3-206ENST00000409809 ZNF696Q9H7X3 374 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 C19orf12Q9NSK7 152 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 STUB1Q9UNE7 303 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 H0Y858 1186 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 XKRYO14609 159 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 FSCN2O14926 492 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 RHOAP61586 193 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 CRTC2Q53ET0 693 aaPredicted RBP12.78□□□□□ -0.36
COL6A3-206ENST00000409809 NIPA1Q7RTP0 329 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 CIR1Q86X95 450 aaPredicted RBP12.78□□□□□ -0.36
COL6A3-206ENST00000409809 LPIN3Q9BQK8 851 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 HPRP00739 348 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 MAGEA3P43357 314 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 DEFA6Q01524 100 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 AIMP2Q13155 320 aaKnown RBP12.78□□□□□ -0.36
COL6A3-206ENST00000409809 CHST13Q8NET6 341 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 WDR48Q8TAF3 677 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 NSUN4Q96CB9 384 aaKnown RBP12.78□□□□□ -0.36
COL6A3-206ENST00000409809 ZBED3Q96IU2 234 aaPredicted RBP12.78□□□□□ -0.36
COL6A3-206ENST00000409809 ZMYM5Q9UJ78 669 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 CMAHPQ9Y471 501 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 AGLP35573 1532 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 IFNA10P01566 189 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 IFNA4P05014 189 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 HOXD10P28358 340 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 TSPAN5P62079 268 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 ACSBG2Q5FVE4 666 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 SLC22A10Q63ZE4 541 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 TAPT1Q6NXT6 567 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 JAZF1Q86VZ6 243 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 TMEM161BQ8NDZ6 487 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 SLC35C1Q96A29 364 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 CPXM1Q96SM3 734 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 PIDD1Q9HB75 910 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 CDH13P55290 713 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 SEMA4DQ92854 862 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 DNAJB6O75190 326 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 DAG1Q14118 895 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 LINGO2Q7L985 606 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 OR7G2Q8NG99 324 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 TSEN15Q8WW01 171 aaKnown RBP12.78□□□□□ -0.36
COL6A3-206ENST00000409809 LRRC4CQ9HCJ2 640 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 MTA2O94776 668 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 RAB36O95755 333 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 LTFP02788 710 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 HMGN1P05114 100 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 PRPS2P11908 318 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 RPL38P63173 70 aaKnown RBP12.78□□□□□ -0.36
COL6A3-206ENST00000409809 GPSM2P81274 684 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 RFTN1Q14699 578 aaPredicted RBP12.78□□□□□ -0.36
COL6A3-206ENST00000409809 BTBD16Q32M84 506 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 REP15Q6BDI9 236 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 SNX33Q8WV41 574 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 TMEM143Q96AN5 459 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 IFT52Q9Y366 437 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 COL15A1P39059 1388 aa12.78□□□□□ -0.36
COL6A3-206ENST00000409809 HOXA2O43364 376 aa12.77□□□□□ -0.36
COL6A3-206ENST00000409809 RBMXL2O75526 392 aaKnown RBP12.77□□□□□ -0.36
COL6A3-206ENST00000409809 CCNDBP1O95273 360 aa12.77□□□□□ -0.36
COL6A3-206ENST00000409809 EEFSECP57772 596 aaKnown RBP12.77□□□□□ -0.36
COL6A3-206ENST00000409809 NWD1Q149M9 1564 aa12.77□□□□□ -0.36
COL6A3-206ENST00000409809 LDLRAP1Q5SW96 308 aa12.77□□□□□ -0.36
COL6A3-206ENST00000409809 MARVELD2Q8N4S9 558 aa12.77□□□□□ -0.36
COL6A3-206ENST00000409809 SLC38A4Q969I6 547 aa12.77□□□□□ -0.36
COL6A3-206ENST00000409809 C5orf51A6NDU8 294 aa12.77□□□□□ -0.36
COL6A3-206ENST00000409809 MCIDASD6RGH6 385 aa12.77□□□□□ -0.36
COL6A3-206ENST00000409809 PRRG1O14668 218 aa12.77□□□□□ -0.36
COL6A3-206ENST00000409809 SERPINA4P29622 427 aa12.77□□□□□ -0.36
COL6A3-206ENST00000409809 CEBPGP53567 150 aa12.77□□□□□ -0.36
COL6A3-206ENST00000409809 ANTXR2P58335 489 aa12.77□□□□□ -0.36
COL6A3-206ENST00000409809 E2F1Q01094 437 aa12.77□□□□□ -0.36
COL6A3-206ENST00000409809 TIGD2Q4W5G0 525 aa12.77□□□□□ -0.36
COL6A3-206ENST00000409809 TATDN1Q6P1N9 297 aa12.77□□□□□ -0.36
COL6A3-206ENST00000409809 ZNF283Q8N7M2 679 aa12.77□□□□□ -0.36
COL6A3-206ENST00000409809 COL21A1Q96P44 957 aa12.77□□□□□ -0.36
COL6A3-206ENST00000409809 NPAS2Q99743 824 aa12.77□□□□□ -0.36
COL6A3-206ENST00000409809 ATP13A3Q9H7F0 1226 aa12.77□□□□□ -0.36
COL6A3-206ENST00000409809 UCKL1Q9NWZ5 548 aa12.77□□□□□ -0.36
COL6A3-206ENST00000409809 ABCD2Q9UBJ2 740 aa12.77□□□□□ -0.36
COL6A3-206ENST00000409809 MINPP1Q9UNW1 487 aa12.77□□□□□ -0.36
COL6A3-206ENST00000409809 CYP3A4P08684 503 aa12.77□□□□□ -0.36
COL6A3-206ENST00000409809 LINGO3P0C6S8 592 aa12.77□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms