RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 PPP4R1Q8TF05 950 aa13.88□□□□□ -0.19
GPNMB-203ENST00000409458 GLYATL1Q969I3 302 aa13.88□□□□□ -0.19
GPNMB-203ENST00000409458 FUBP1Q96AE4 644 aaKnown RBP13.88□□□□□ -0.19
GPNMB-203ENST00000409458 CCDC126Q96EE4 140 aa13.88□□□□□ -0.19
GPNMB-203ENST00000409458 PHF21BQ96EK2 531 aa13.88□□□□□ -0.19
GPNMB-203ENST00000409458 DCUN1D1Q96GG9 259 aa13.88□□□□□ -0.19
GPNMB-203ENST00000409458 MKRN2Q9H000 416 aaKnown RBP13.88□□□□□ -0.19
GPNMB-203ENST00000409458 CD248Q9HCU0 757 aa13.88□□□□□ -0.19
GPNMB-203ENST00000409458 SPATS2LQ9NUQ6 558 aaKnown RBP13.88□□□□□ -0.19
GPNMB-203ENST00000409458 ABCF3Q9NUQ8 709 aa13.88□□□□□ -0.19
GPNMB-203ENST00000409458 PNPOQ9NVS9 261 aa13.88□□□□□ -0.19
GPNMB-203ENST00000409458 RNF112Q9ULX5 631 aa13.88□□□□□ -0.19
GPNMB-203ENST00000409458 K7ESM1 405 aa13.87□□□□□ -0.19
GPNMB-203ENST00000409458 INPP4BO15327 924 aa13.87□□□□□ -0.19
GPNMB-203ENST00000409458 SGTAO43765 313 aa13.87□□□□□ -0.19
GPNMB-203ENST00000409458 SMIM24O75264 130 aa13.87□□□□□ -0.19
GPNMB-203ENST00000409458 OR56A5P0C7T3 313 aa13.87□□□□□ -0.19
GPNMB-203ENST00000409458 MSH3P20585 1137 aa13.87□□□□□ -0.19
GPNMB-203ENST00000409458 MPSTP25325 297 aa13.87□□□□□ -0.19
GPNMB-203ENST00000409458 ASPHQ12797 758 aa13.87□□□□□ -0.19
GPNMB-203ENST00000409458 STARD3Q14849 445 aa13.87□□□□□ -0.19
GPNMB-203ENST00000409458 LEXMQ3ZCV2 418 aa13.87□□□□□ -0.19
GPNMB-203ENST00000409458 ACSBG2Q5FVE4 666 aa13.87□□□□□ -0.19
GPNMB-203ENST00000409458 LDLRAP1Q5SW96 308 aa13.87□□□□□ -0.19
GPNMB-203ENST00000409458 SLC22A9Q8IVM8 553 aa13.87□□□□□ -0.19
GPNMB-203ENST00000409458 LSMEM2Q8N112 164 aa13.87□□□□□ -0.19
GPNMB-203ENST00000409458 CCNYL1Q8N7R7 359 aa13.87□□□□□ -0.19
GPNMB-203ENST00000409458 STAG3L4Q8TBR4 150 aa13.87□□□□□ -0.19
GPNMB-203ENST00000409458 PIWIL2Q8TC59 973 aaKnown RBP13.87□□□□□ -0.19
GPNMB-203ENST00000409458 PANX3Q96QZ0 392 aa13.87□□□□□ -0.19
GPNMB-203ENST00000409458 TMEM120AQ9BXJ8 343 aa13.87□□□□□ -0.19
GPNMB-203ENST00000409458 USH1CQ9Y6N9 552 aa13.87□□□□□ -0.19
GPNMB-203ENST00000409458 MYO10Q9HD67 2058 aa13.87□□□□□ -0.19
GPNMB-203ENST00000409458 F5P12259 2224 aa13.86□□□□□ -0.19
GPNMB-203ENST00000409458 SUPT3HB4E1H0 165 aa13.86□□□□□ -0.19
GPNMB-203ENST00000409458 CFAP99D6REC4 459 aa13.86□□□□□ -0.19
GPNMB-203ENST00000409458 AP1G1O43747 822 aa13.86□□□□□ -0.19
GPNMB-203ENST00000409458 NPHS1O60500 1241 aa13.86□□□□□ -0.19
GPNMB-203ENST00000409458 SUPT3HO75486 399 aa13.86□□□□□ -0.19
GPNMB-203ENST00000409458 RNASEH2AO75792 299 aaKnown RBP13.86□□□□□ -0.19
GPNMB-203ENST00000409458 TPBGLP0DKB5 382 aa13.86□□□□□ -0.19
GPNMB-203ENST00000409458 CCR7P32248 378 aa13.86□□□□□ -0.19
GPNMB-203ENST00000409458 ARFIP2P53365 341 aa13.86□□□□□ -0.19
GPNMB-203ENST00000409458 HSF5Q4G112 596 aaPredicted RBP13.86□□□□□ -0.19
GPNMB-203ENST00000409458 ARL13AQ5H913 290 aaPredicted RBP13.86□□□□□ -0.19
GPNMB-203ENST00000409458 RAET1GQ6H3X3 334 aa13.86□□□□□ -0.19
GPNMB-203ENST00000409458 PTCRAQ6ISU1 281 aaPredicted RBP13.86□□□□□ -0.19
GPNMB-203ENST00000409458 RPS27LQ71UM5 84 aaKnown RBP13.86□□□□□ -0.19
GPNMB-203ENST00000409458 TRMT11Q7Z4G4 463 aaKnown RBP13.86□□□□□ -0.19
GPNMB-203ENST00000409458 PHYKPLQ8IUZ5 450 aa13.86□□□□□ -0.19
GPNMB-203ENST00000409458 PTGR2Q8N8N7 351 aaPredicted RBP13.86□□□□□ -0.19
GPNMB-203ENST00000409458 PDLIM5Q96HC4 596 aaKnown RBP13.86□□□□□ -0.19
GPNMB-203ENST00000409458 PLCD4Q9BRC7 762 aa13.86□□□□□ -0.19
GPNMB-203ENST00000409458 LATS2Q9NRM7 1088 aa13.86□□□□□ -0.19
GPNMB-203ENST00000409458 KCTD5Q9NXV2 234 aa13.86□□□□□ -0.19
GPNMB-203ENST00000409458 CNOT6Q9ULM6 557 aaKnown RBP13.86□□□□□ -0.19
GPNMB-203ENST00000409458 CCT8L1PA6NM43 557 aa13.85□□□□□ -0.19
GPNMB-203ENST00000409458 HGSO14964 777 aaPredicted RBP13.85□□□□□ -0.19
GPNMB-203ENST00000409458 MAGEC1O60732 1142 aa13.85□□□□□ -0.19
GPNMB-203ENST00000409458 SRFP11831 508 aa13.85□□□□□ -0.19
GPNMB-203ENST00000409458 GLULP15104 373 aa13.85□□□□□ -0.19
GPNMB-203ENST00000409458 IL9P15248 144 aa13.85□□□□□ -0.19
GPNMB-203ENST00000409458 DGKAP23743 735 aa13.85□□□□□ -0.19
GPNMB-203ENST00000409458 RGS4P49798 205 aa13.85□□□□□ -0.19
GPNMB-203ENST00000409458 HK3P52790 923 aa13.85□□□□□ -0.19
GPNMB-203ENST00000409458 MRPS21P82921 87 aaKnown RBP13.85□□□□□ -0.19
GPNMB-203ENST00000409458 DPTQ07507 201 aa13.85□□□□□ -0.19
GPNMB-203ENST00000409458 TTLL9Q3SXZ7 439 aa13.85□□□□□ -0.19
GPNMB-203ENST00000409458 CFAP157Q5JU67 520 aa13.85□□□□□ -0.19
GPNMB-203ENST00000409458 ZNF678Q5SXM1 525 aa13.85□□□□□ -0.19
GPNMB-203ENST00000409458 TRPM8Q7Z2W7 1104 aa13.85□□□□□ -0.19
GPNMB-203ENST00000409458 MAVSQ7Z434 540 aa13.85□□□□□ -0.19
GPNMB-203ENST00000409458 TRIM74Q86UV6 250 aa13.85□□□□□ -0.19
GPNMB-203ENST00000409458 MYO1HQ8N1T3 1032 aa13.85□□□□□ -0.19
GPNMB-203ENST00000409458 RPLP0P6Q8NHW5 317 aa13.85□□□□□ -0.19
GPNMB-203ENST00000409458 FAM3CQ92520 227 aa13.85□□□□□ -0.19
GPNMB-203ENST00000409458 FAM131CQ96AQ9 280 aa13.85□□□□□ -0.19
GPNMB-203ENST00000409458 L3HYPDHQ96EM0 354 aa13.85□□□□□ -0.19
GPNMB-203ENST00000409458 SHCBP1LQ9BZQ2 653 aa13.85□□□□□ -0.19
GPNMB-203ENST00000409458 FBRSQ9HAH7 460 aa13.85□□□□□ -0.19
GPNMB-203ENST00000409458 SLC2A4RGQ9NR83 387 aa13.85□□□□□ -0.19
GPNMB-203ENST00000409458 KCNK4Q9NYG8 393 aa13.85□□□□□ -0.19
GPNMB-203ENST00000409458 ATXN2Q99700 1313 aaKnown RBP13.85□□□□□ -0.19
GPNMB-203ENST00000409458 IGLON5A6NGN9 336 aa13.85□□□□□ -0.19
GPNMB-203ENST00000409458 OR2AG2A6NM03 316 aa13.85□□□□□ -0.19
GPNMB-203ENST00000409458 SYCE1LA8MT33 242 aa13.85□□□□□ -0.19
GPNMB-203ENST00000409458 TSPAN6O43657 245 aa13.85□□□□□ -0.19
GPNMB-203ENST00000409458 AP2A2O94973 939 aa13.85□□□□□ -0.19
GPNMB-203ENST00000409458 DNTTP04053 509 aa13.85□□□□□ -0.19
GPNMB-203ENST00000409458 GFAPP14136 432 aa13.85□□□□□ -0.19
GPNMB-203ENST00000409458 IMPDH1P20839 514 aa13.85□□□□□ -0.19
GPNMB-203ENST00000409458 CD72P21854 359 aa13.85□□□□□ -0.19
GPNMB-203ENST00000409458 AOAHP28039 575 aa13.85□□□□□ -0.19
GPNMB-203ENST00000409458 SERPINB5P36952 375 aa13.85□□□□□ -0.19
GPNMB-203ENST00000409458 GPR1P46091 355 aa13.85□□□□□ -0.19
GPNMB-203ENST00000409458 CTSCP53634 463 aa13.85□□□□□ -0.19
GPNMB-203ENST00000409458 AQP5P55064 265 aa13.85□□□□□ -0.19
GPNMB-203ENST00000409458 TDGQ13569 410 aa13.85□□□□□ -0.19
GPNMB-203ENST00000409458 CCINQ13939 588 aa13.85□□□□□ -0.19
GPNMB-203ENST00000409458 GBX1Q14549 363 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms