RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 EVPLQ92817 2033 aa11.83□□□□□ -0.52
HMGB1-206ENST00000405805 NT5C1B-RDH14C9J2C7 533 aa11.83□□□□□ -0.52
HMGB1-206ENST00000405805 E9PAM4 449 aa11.83□□□□□ -0.52
HMGB1-206ENST00000405805 DCLK1O15075 740 aa11.83□□□□□ -0.52
HMGB1-206ENST00000405805 CTPS1P17812 591 aa11.83□□□□□ -0.52
HMGB1-206ENST00000405805 ELK4P28324 431 aa11.83□□□□□ -0.52
HMGB1-206ENST00000405805 LRRC74AQ0VAA2 488 aa11.83□□□□□ -0.52
HMGB1-206ENST00000405805 DPYSQ14117 519 aa11.83□□□□□ -0.52
HMGB1-206ENST00000405805 PAFAH1B3Q15102 231 aaKnown RBP11.83□□□□□ -0.52
HMGB1-206ENST00000405805 TGFBIQ15582 683 aa11.83□□□□□ -0.52
HMGB1-206ENST00000405805 CPSF6Q16630 551 aaKnown RBP eCLIP11.83□□□□□ -0.523e-18■■□□□ 11.5
HMGB1-206ENST00000405805 SFRP1Q8N474 314 aa11.83□□□□□ -0.52
HMGB1-206ENST00000405805 CPSF7Q8N684 471 aaKnown RBP11.83□□□□□ -0.52
HMGB1-206ENST00000405805 VPS35Q96QK1 796 aa11.83□□□□□ -0.52
HMGB1-206ENST00000405805 ASPSCR1Q9BZE9 553 aa11.83□□□□□ -0.52
HMGB1-206ENST00000405805 DPY30Q9C005 99 aa11.83□□□□□ -0.52
HMGB1-206ENST00000405805 SMOXQ9NWM0 555 aa11.83□□□□□ -0.52
HMGB1-206ENST00000405805 SMPD3Q9NY59 655 aaPredicted RBP11.83□□□□□ -0.52
HMGB1-206ENST00000405805 EIF2B4Q9UI10 523 aaKnown RBP11.83□□□□□ -0.52
HMGB1-206ENST00000405805 KCNH4Q9UQ05 1017 aa11.83□□□□□ -0.52
HMGB1-206ENST00000405805 MRPS7Q9Y2R9 242 aaKnown RBP11.83□□□□□ -0.52
HMGB1-206ENST00000405805 POLR3HQ9Y535 204 aaPredicted RBP11.83□□□□□ -0.52
HMGB1-206ENST00000405805 IQCF5A8MTL0 148 aa11.83□□□□□ -0.52
HMGB1-206ENST00000405805 ARPC2O15144 300 aa11.83□□□□□ -0.52
HMGB1-206ENST00000405805 SLC22A3O75751 556 aa11.83□□□□□ -0.52
HMGB1-206ENST00000405805 ITGALP20701 1170 aa11.83□□□□□ -0.52
HMGB1-206ENST00000405805 AGTR2P50052 363 aa11.83□□□□□ -0.52
HMGB1-206ENST00000405805 CYP4F2P78329 520 aa11.83□□□□□ -0.52
HMGB1-206ENST00000405805 CLCQ05315 142 aa11.83□□□□□ -0.52
HMGB1-206ENST00000405805 CYP4F3Q08477 520 aa11.83□□□□□ -0.52
HMGB1-206ENST00000405805 KRR1Q13601 381 aaKnown RBP11.83□□□□□ -0.52
HMGB1-206ENST00000405805 KCNJ8Q15842 424 aa11.83□□□□□ -0.52
HMGB1-206ENST00000405805 TSTD2Q5T7W7 516 aa11.83□□□□□ -0.52
HMGB1-206ENST00000405805 SLC44A2Q8IWA5 706 aaPredicted RBP11.83□□□□□ -0.52
HMGB1-206ENST00000405805 ARRDC4Q8NCT1 418 aa11.83□□□□□ -0.52
HMGB1-206ENST00000405805 TDRD1Q9BXT4 1180 aaKnown RBP11.83□□□□□ -0.52
HMGB1-206ENST00000405805 STARD7Q9NQZ5 370 aa11.83□□□□□ -0.52
HMGB1-206ENST00000405805 GDAP2Q9NXN4 497 aa11.83□□□□□ -0.52
HMGB1-206ENST00000405805 MARCH2Q9P0N8 246 aa11.83□□□□□ -0.52
HMGB1-206ENST00000405805 MAGED1Q9Y5V3 778 aaPredicted RBP11.83□□□□□ -0.52
HMGB1-206ENST00000405805 CNTN5O94779 1100 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 FTH1P02794 183 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 POU1F1P28069 291 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 UFM1P61960 85 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 TRAF3Q13114 568 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 FGD3Q5JSP0 725 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 STXBP5Q5T5C0 1151 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 CRTC3Q6UUV7 619 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 GLB1LQ6UWU2 654 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 LINGO4Q6UY18 593 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 BTN2A1Q7KYR7 527 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 SLC22A16Q86VW1 577 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 P3H2Q8IVL5 708 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 C8orf59Q8N0T1 100 aaPredicted RBP11.82□□□□□ -0.52
HMGB1-206ENST00000405805 PNPT1Q8TCS8 783 aaKnown RBP11.82□□□□□ -0.52
HMGB1-206ENST00000405805 KATNAL1Q9BW62 490 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 SIAEQ9HAT2 523 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 EHD3Q9NZN3 535 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 POU2F3Q9UKI9 436 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 INVSQ9Y283 1065 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 NME7Q9Y5B8 376 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 CDC7O00311 574 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 IL1BP01584 269 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 ABCB1P08183 1280 aaPredicted RBP11.82□□□□□ -0.52
HMGB1-206ENST00000405805 AKT1P31749 480 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 TTKP33981 857 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 CCT8P50990 548 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 PRKG2Q13237 762 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 HS6ST3Q8IZP7 471 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 LINGO1Q96FE5 620 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 CENPNQ96H22 339 aaPredicted RBP11.82□□□□□ -0.52
HMGB1-206ENST00000405805 TPD52L3Q96J77 140 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 CLEC4MQ9H2X3 399 aaPredicted RBP11.82□□□□□ -0.52
HMGB1-206ENST00000405805 ACTR8Q9H981 624 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 NMRK2Q9NPI5 230 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 ABCC13Q9NSE7 274 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 RIMS3Q9UJD0 308 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 CCDC162PA2VCL2 907 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 SYNDIG1LA6NDD5 238 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 EVPLLA8MZ36 301 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 MATN3O15232 486 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 TLR5O60602 858 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 PRKD3O94806 890 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 ZNF806P0C7X5 589 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 COL6A2P12110 1019 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 AQP1P29972 269 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 GSK3BP49841 420 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 FOXA1P55317 472 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 CDK18Q07002 472 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 CTXN3Q4LDR2 81 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 ATP6V0D2Q8N8Y2 350 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 OR7D4Q8NG98 312 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 OR4L1Q8NH43 312 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 OR10A6Q8NH74 314 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 C3orf30Q96M34 536 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 TMEM246Q9BRR3 403 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 NAA50Q9GZZ1 169 aaKnown RBP11.82□□□□□ -0.52
HMGB1-206ENST00000405805 COMMD8Q9NX08 183 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 GLTPD2A6NH11 291 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 MTHFRP42898 656 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms