RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 Q9Y3F1 56 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 ZNF711Q9Y462 761 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 A0A0D9SEW6 157 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 BOLA2-SMG1P6H3BVE0 249 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 E2F3O00716 465 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 OR1I1O60431 355 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 SOAT2O75908 522 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 MLYCDO95822 493 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 CHEK2O96017 543 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 SERPINF2P08697 491 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 MBL2P11226 248 aaPredicted RBP12.57□□□□□ -0.4
SHMT1-205ENST00000395684 PSMD7P51665 324 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 C21orf59P57076 290 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 TRAF2Q12933 501 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 CRY1Q16526 586 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 C9orf131Q5VYM1 1079 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 XAF1Q6GPH4 301 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 TTC9BQ8N6N2 239 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 TERB1Q8NA31 727 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 SIDT2Q8NBJ9 832 aaKnown RBP12.57□□□□□ -0.4
SHMT1-205ENST00000395684 MDGA1Q8NFP4 955 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 TMBIM1Q969X1 311 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 HBEGFQ99075 208 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 ZBED2Q9BTP6 218 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 CCDC68Q9H2F9 335 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 ACTL8Q9H568 366 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 PDFQ9HBH1 243 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 LTB4R2Q9NPC1 389 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 EIF2B4Q9UI10 523 aaKnown RBP12.57□□□□□ -0.4
SHMT1-205ENST00000395684 RIMKLBQ9ULI2 386 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 PCDHB3Q9Y5E6 796 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 MYO16Q9Y6X6 1858 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 NDUFS3O75489 264 aa12.56□□□□□ -0.4
SHMT1-205ENST00000395684 RSL1D1O76021 490 aaKnown RBP12.56□□□□□ -0.4
SHMT1-205ENST00000395684 PRSS23O95084 383 aa12.56□□□□□ -0.4
SHMT1-205ENST00000395684 ZBTB11O95625 1053 aaPredicted RBP12.56□□□□□ -0.4
SHMT1-205ENST00000395684 NDST3O95803 873 aa12.56□□□□□ -0.4
SHMT1-205ENST00000395684 ALPLP05186 524 aa12.56□□□□□ -0.4
SHMT1-205ENST00000395684 CDH1P12830 882 aa12.56□□□□□ -0.4
SHMT1-205ENST00000395684 ALDH3A2P51648 485 aa12.56□□□□□ -0.4
SHMT1-205ENST00000395684 ERVPABLB-1P60509 514 aa12.56□□□□□ -0.4
SHMT1-205ENST00000395684 PRKG2Q13237 762 aa12.56□□□□□ -0.4
SHMT1-205ENST00000395684 CBX2Q14781 532 aaPredicted RBP12.56□□□□□ -0.4
SHMT1-205ENST00000395684 GPRIN3Q6ZVF9 776 aa12.56□□□□□ -0.4
SHMT1-205ENST00000395684 PIANPQ8IYJ0 282 aa12.56□□□□□ -0.4
SHMT1-205ENST00000395684 SFRP1Q8N474 314 aa12.56□□□□□ -0.4
SHMT1-205ENST00000395684 DPP10Q8N608 796 aa12.56□□□□□ -0.4
SHMT1-205ENST00000395684 LEMD2Q8NC56 503 aa12.56□□□□□ -0.4
SHMT1-205ENST00000395684 OR56A4Q8NGH8 313 aa12.56□□□□□ -0.4
SHMT1-205ENST00000395684 PNPT1Q8TCS8 783 aaKnown RBP12.56□□□□□ -0.4
SHMT1-205ENST00000395684 EEF1AKMT1Q8WVE0 214 aa12.56□□□□□ -0.4
SHMT1-205ENST00000395684 SNX19Q92543 992 aa12.56□□□□□ -0.4
SHMT1-205ENST00000395684 CNDP2Q96KP4 475 aaKnown RBP12.56□□□□□ -0.4
SHMT1-205ENST00000395684 ADAM2Q99965 735 aa12.56□□□□□ -0.4
SHMT1-205ENST00000395684 TMEM9Q9P0T7 183 aa12.56□□□□□ -0.4
SHMT1-205ENST00000395684 NIPSNAP2O75323 286 aa12.56□□□□□ -0.4
SHMT1-205ENST00000395684 SEC14L2O76054 403 aa12.56□□□□□ -0.4
SHMT1-205ENST00000395684 CCNA2P20248 432 aa12.56□□□□□ -0.4
SHMT1-205ENST00000395684 RGRP47804 291 aa12.56□□□□□ -0.4
SHMT1-205ENST00000395684 PLIN5Q00G26 463 aa12.56□□□□□ -0.4
SHMT1-205ENST00000395684 TGFBIQ15582 683 aa12.56□□□□□ -0.4
SHMT1-205ENST00000395684 MOGQ16653 247 aa12.56□□□□□ -0.4
SHMT1-205ENST00000395684 GNASQ5JWF2 1037 aa12.56□□□□□ -0.4
SHMT1-205ENST00000395684 SERINC5Q86VE9 423 aa12.56□□□□□ -0.4
SHMT1-205ENST00000395684 CFAP52Q8N1V2 620 aa12.56□□□□□ -0.4
SHMT1-205ENST00000395684 CSF3RQ99062 836 aa12.56□□□□□ -0.4
SHMT1-205ENST00000395684 FBXO44Q9H4M3 255 aa12.56□□□□□ -0.4
SHMT1-205ENST00000395684 CARS2Q9HA77 564 aaKnown RBP12.56□□□□□ -0.4
SHMT1-205ENST00000395684 CORINQ9Y5Q5 1042 aa12.56□□□□□ -0.4
SHMT1-205ENST00000395684 BRCA2P51587 3418 aa12.56□□□□□ -0.4
SHMT1-205ENST00000395684 DYTNA2CJ06 578 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 NPPAP01160 153 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 G6PDP11413 515 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 JUNBP17275 347 aaPredicted RBP12.55□□□□□ -0.4
SHMT1-205ENST00000395684 MAP4P27816 1152 aaKnown RBP12.55□□□□□ -0.4
SHMT1-205ENST00000395684 HTR6P50406 440 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 DGKQP52824 942 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 IST1P53990 364 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 TMBIM6P55061 237 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 DAG1Q14118 895 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 DSC3Q14574 896 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 TRIP4Q15650 581 aaPredicted RBP12.55□□□□□ -0.4
SHMT1-205ENST00000395684 ATP6AP1LQ52LC2 224 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 NADSYN1Q6IA69 706 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 PSAPL1Q6NUJ1 521 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 LETMD1Q6P1Q0 360 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 TXNDC11Q6PKC3 985 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 DCDC5Q6ZRR9 648 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 EFL1Q7Z2Z2 1120 aaKnown RBP12.55□□□□□ -0.4
SHMT1-205ENST00000395684 STK32CQ86UX6 486 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 ZNF280BQ86YH2 543 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 NKAPQ8N5F7 415 aaKnown RBP12.55□□□□□ -0.4
SHMT1-205ENST00000395684 FAM86B1Q8N7N1 296 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 BPIFB6Q8NFQ5 453 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 COX4I2Q96KJ9 171 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 GLT1D1Q96MS3 346 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 LHPPQ9H008 270 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 MARCH2Q9P0N8 246 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 MAGEL2Q9UJ55 1249 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 PCDHB8Q9UN66 801 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms