RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 OLFML1Q6UWY5 402 aa12.68□□□□□ -0.38
CCDC88C-204ENST00000389857 SPPL2CQ8IUH8 684 aa12.68□□□□□ -0.38
CCDC88C-204ENST00000389857 OR6K2Q8NGY2 324 aa12.68□□□□□ -0.38
CCDC88C-204ENST00000389857 GPR152Q8TDT2 470 aa12.68□□□□□ -0.38
CCDC88C-204ENST00000389857 GAL3ST3Q96A11 431 aa12.68□□□□□ -0.38
CCDC88C-204ENST00000389857 DDX4Q9NQI0 724 aaKnown RBP12.68□□□□□ -0.38
CCDC88C-204ENST00000389857 CDH7Q9ULB5 785 aa12.68□□□□□ -0.38
CCDC88C-204ENST00000389857 FADS3Q9Y5Q0 445 aa12.68□□□□□ -0.38
CCDC88C-204ENST00000389857 CEP170BQ9Y4F5 1589 aaPredicted RBP12.68□□□□□ -0.38
CCDC88C-204ENST00000389857 HCN1O60741 890 aa12.68□□□□□ -0.38
CCDC88C-204ENST00000389857 ALPPL2P10696 532 aa12.68□□□□□ -0.38
CCDC88C-204ENST00000389857 ZNF823P16415 610 aa12.68□□□□□ -0.38
CCDC88C-204ENST00000389857 MAPK14Q16539 360 aa12.68□□□□□ -0.38
CCDC88C-204ENST00000389857 ZNF311Q5JNZ3 666 aa12.68□□□□□ -0.38
CCDC88C-204ENST00000389857 ZYG11AQ6WRX3 759 aa12.68□□□□□ -0.38
CCDC88C-204ENST00000389857 PPP1R13LQ8WUF5 828 aa12.68□□□□□ -0.38
CCDC88C-204ENST00000389857 IRGQQ8WZA9 623 aa12.68□□□□□ -0.38
CCDC88C-204ENST00000389857 EXOSC8Q96B26 276 aaKnown RBP12.68□□□□□ -0.38
CCDC88C-204ENST00000389857 APOLD1Q96LR9 279 aa12.68□□□□□ -0.38
CCDC88C-204ENST00000389857 MED31Q9Y3C7 131 aa12.68□□□□□ -0.38
CCDC88C-204ENST00000389857 ARHGAP23Q9P227 1491 aa12.68□□□□□ -0.38
CCDC88C-204ENST00000389857 LMTK2Q8IWU2 1503 aa12.68□□□□□ -0.38
CCDC88C-204ENST00000389857 CCL16O15467 120 aa12.68□□□□□ -0.38
CCDC88C-204ENST00000389857 TULP3O75386 442 aa12.68□□□□□ -0.38
CCDC88C-204ENST00000389857 CCNE2O96020 404 aa12.68□□□□□ -0.38
CCDC88C-204ENST00000389857 C1RP00736 705 aa12.68□□□□□ -0.38
CCDC88C-204ENST00000389857 AQP1P29972 269 aa12.68□□□□□ -0.38
CCDC88C-204ENST00000389857 ECHS1P30084 290 aa12.68□□□□□ -0.38
CCDC88C-204ENST00000389857 RUNDC3AQ59EK9 446 aa12.68□□□□□ -0.38
CCDC88C-204ENST00000389857 FAM47BQ8NA70 645 aa12.68□□□□□ -0.38
CCDC88C-204ENST00000389857 AZIN2Q96A70 460 aa12.68□□□□□ -0.38
CCDC88C-204ENST00000389857 PLLPQ9Y342 182 aa12.68□□□□□ -0.38
CCDC88C-204ENST00000389857 E9PAM4 449 aa12.68□□□□□ -0.38
CCDC88C-204ENST00000389857 STK16O75716 305 aa12.68□□□□□ -0.38
CCDC88C-204ENST00000389857 DBIP07108 87 aaKnown RBP12.68□□□□□ -0.38
CCDC88C-204ENST00000389857 OR1D2P34982 312 aa12.68□□□□□ -0.38
CCDC88C-204ENST00000389857 GRK6P43250 576 aa12.68□□□□□ -0.38
CCDC88C-204ENST00000389857 OR4K2Q8NGD2 314 aa12.68□□□□□ -0.38
CCDC88C-204ENST00000389857 SGCDQ92629 289 aa12.68□□□□□ -0.38
CCDC88C-204ENST00000389857 TSSK3Q96PN8 268 aa12.68□□□□□ -0.38
CCDC88C-204ENST00000389857 S100A14Q9HCY8 104 aa12.68□□□□□ -0.38
CCDC88C-204ENST00000389857 OSER1Q9NX31 292 aa12.68□□□□□ -0.38
CCDC88C-204ENST00000389857 CCNB2O95067 398 aa12.68□□□□□ -0.38
CCDC88C-204ENST00000389857 KHKP50053 298 aa12.68□□□□□ -0.38
CCDC88C-204ENST00000389857 ZNF554Q86TJ5 538 aa12.68□□□□□ -0.38
CCDC88C-204ENST00000389857 ZNF615Q8N8J6 731 aa12.68□□□□□ -0.38
CCDC88C-204ENST00000389857 ARL10Q8N8L6 244 aa12.68□□□□□ -0.38
CCDC88C-204ENST00000389857 FBXO22Q8NEZ5 403 aa12.68□□□□□ -0.38
CCDC88C-204ENST00000389857 PCDH18Q9HCL0 1135 aa12.68□□□□□ -0.38
CCDC88C-204ENST00000389857 ANXA2P2A6NMY6 339 aa12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 H3BNX3 289 aa12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 ANXA2P07355 339 aaKnown RBP12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 NRG3P56975 720 aa12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 DUSP4Q13115 394 aa12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 TEX44Q53QW1 395 aa12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 ADNP2Q6IQ32 1131 aa12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 PRELID2Q8N945 189 aa12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 FAM163AQ96GL9 167 aaPredicted RBP12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 GPATCH1Q9BRR8 931 aaKnown RBP12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 TAS2R7Q9NYW3 318 aa12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 SQORQ9Y6N5 450 aa12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 PITPNM1O00562 1244 aa12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 KERAO60938 352 aa12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 SASH3O75995 380 aa12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 SERPINA3P01011 423 aa12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 ROR2Q01974 943 aaKnown RBP12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 SLC9B1Q4ZJI4 515 aa12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 ADGRG6Q86SQ4 1221 aa12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 ZZZ3Q8IYH5 903 aa12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 CFAP206Q8IYR0 622 aa12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 SHC3Q92529 594 aa12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 NKIRAS2Q9NYR9 191 aa12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 ASLP04424 464 aa12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 ANXA4P09525 319 aaPredicted RBP12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 SCN1BQ07699 218 aa12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 REP15Q6BDI9 236 aa12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 PTF1AQ7RTS3 328 aa12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 GPR65Q8IYL9 337 aa12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 C2orf73Q8N5S3 287 aaPredicted RBP12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 C11orf65Q8NCR3 313 aa12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 OR14C36Q8NHC7 312 aa12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 LGR4Q9BXB1 951 aa12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 RBM47A0AV96 593 aaKnown RBP12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 CCNKO75909 580 aa12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 MTTPP55157 894 aa12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 NRG1Q02297 640 aaPredicted RBP12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 PLCZ1Q86YW0 608 aa12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 ZNF567Q8N184 647 aa12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 ABCB9Q9NP78 766 aa12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 C12orf4Q9NQ89 552 aa12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 MOCS1Q9NZB8 636 aa12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 PRKAB1Q9Y478 270 aa12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 LRRC72A6NJI9 287 aa12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 TRMUO75648 421 aaKnown RBP12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 NDST3O95803 873 aa12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 ATP5A1P25705 553 aaKnown RBP12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 RPL7AP62424 266 aaKnown RBP12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 TMEM44Q2T9K0 475 aa12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 KCNK18Q7Z418 384 aa12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 NANOGNBQ7Z5D8 188 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms