RNA–Protein interactions for RNA: ENST00000381150.5

SDC1-202, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SDC1, Length 3,291 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-202ENST00000381150 MADCAM1Q13477 382 aa13.72□□□□□ -0.21
SDC1-202ENST00000381150 UPP1Q16831 310 aa13.72□□□□□ -0.21
SDC1-202ENST00000381150 TIGD5Q53EQ6 642 aa13.72□□□□□ -0.21
SDC1-202ENST00000381150 KIAA0408Q6ZU52 694 aa13.72□□□□□ -0.21
SDC1-202ENST00000381150 SPATC1Q76KD6 591 aa13.72□□□□□ -0.21
SDC1-202ENST00000381150 MRPL10Q7Z7H8 261 aaKnown RBP13.72□□□□□ -0.21
SDC1-202ENST00000381150 RASAL3Q86YV0 1011 aa13.72□□□□□ -0.21
SDC1-202ENST00000381150 SLC22A17Q8WUG5 538 aa13.72□□□□□ -0.21
SDC1-202ENST00000381150 ROPN1LQ96C74 230 aa13.72□□□□□ -0.21
SDC1-202ENST00000381150 MAGED4Q96JG8 741 aa13.72□□□□□ -0.21
SDC1-202ENST00000381150 C17orf80Q9BSJ5 609 aa13.72□□□□□ -0.21
SDC1-202ENST00000381150 AGO3Q9H9G7 860 aaKnown RBP13.72□□□□□ -0.21
SDC1-202ENST00000381150 SCHIP1Q9P0W5 487 aaPredicted RBP13.72□□□□□ -0.21
SDC1-202ENST00000381150 KIAA1522Q9P206 1035 aaPredicted RBP13.72□□□□□ -0.21
SDC1-202ENST00000381150 CAB39Q9Y376 341 aaPredicted RBP13.72□□□□□ -0.21
SDC1-202ENST00000381150 MICAL3Q7RTP6 2002 aa13.72□□□□□ -0.21
SDC1-202ENST00000381150 A0A1W2PQ67 120 aa13.72□□□□□ -0.21
SDC1-202ENST00000381150 CCNKO75909 580 aa13.72□□□□□ -0.21
SDC1-202ENST00000381150 SEC14L2O76054 403 aa13.72□□□□□ -0.21
SDC1-202ENST00000381150 CNTN5O94779 1100 aa13.72□□□□□ -0.21
SDC1-202ENST00000381150 GPIP06744 558 aa13.72□□□□□ -0.21
SDC1-202ENST00000381150 CRHBPP24387 322 aa13.72□□□□□ -0.21
SDC1-202ENST00000381150 HADHAP40939 763 aa13.72□□□□□ -0.21
SDC1-202ENST00000381150 TRIP4Q15650 581 aaPredicted RBP13.72□□□□□ -0.21
SDC1-202ENST00000381150 UGT3A2Q3SY77 523 aa13.72□□□□□ -0.21
SDC1-202ENST00000381150 PCID2Q5JVF3 399 aa13.72□□□□□ -0.21
SDC1-202ENST00000381150 KCTD11Q693B1 232 aa13.72□□□□□ -0.21
SDC1-202ENST00000381150 RAB44Q7Z6P3 723 aaPredicted RBP13.72□□□□□ -0.21
SDC1-202ENST00000381150 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.72□□□□□ -0.21
SDC1-202ENST00000381150 CLIP3Q96DZ5 547 aa13.72□□□□□ -0.21
SDC1-202ENST00000381150 TBL1YQ9BQ87 522 aa13.72□□□□□ -0.21
SDC1-202ENST00000381150 ALOXE3Q9BYJ1 711 aa13.72□□□□□ -0.21
SDC1-202ENST00000381150 ASPSCR1Q9BZE9 553 aa13.72□□□□□ -0.21
SDC1-202ENST00000381150 RRAGCQ9HB90 399 aa13.72□□□□□ -0.21
SDC1-202ENST00000381150 INTS10Q9NVR2 710 aaKnown RBP13.72□□□□□ -0.21
SDC1-202ENST00000381150 TBC1D14Q9P2M4 693 aa13.72□□□□□ -0.21
SDC1-202ENST00000381150 SLCO3A1Q9UIG8 710 aa13.72□□□□□ -0.21
SDC1-202ENST00000381150 TARM1B6A8C7 271 aa13.72□□□□□ -0.21
SDC1-202ENST00000381150 PIRTP0C851 137 aa13.72□□□□□ -0.21
SDC1-202ENST00000381150 AKR1A1P14550 325 aa13.72□□□□□ -0.21
SDC1-202ENST00000381150 PAMP19021 973 aa13.72□□□□□ -0.21
SDC1-202ENST00000381150 HUNKP57058 714 aa13.72□□□□□ -0.21
SDC1-202ENST00000381150 GTF2H3Q13889 308 aa13.72□□□□□ -0.21
SDC1-202ENST00000381150 AASDHQ4L235 1098 aaPredicted RBP13.72□□□□□ -0.21
SDC1-202ENST00000381150 CATSPEREQ5SY80 951 aa13.72□□□□□ -0.21
SDC1-202ENST00000381150 LARP4Q71RC2 724 aaKnown RBP eCLIP13.72□□□□□ -0.213e-8■□□□□ 10.4
SDC1-202ENST00000381150 CLYBLQ8N0X4 340 aa13.72□□□□□ -0.21
SDC1-202ENST00000381150 ADAMTS16Q8TE57 1224 aa13.72□□□□□ -0.21
SDC1-202ENST00000381150 COLEC11Q9BWP8 271 aa13.72□□□□□ -0.21
SDC1-202ENST00000381150 RIBC2Q9H4K1 309 aa13.72□□□□□ -0.21
SDC1-202ENST00000381150 NSMCE4AQ9NXX6 385 aa13.72□□□□□ -0.21
SDC1-202ENST00000381150 CDH9Q9ULB4 789 aa13.72□□□□□ -0.21
SDC1-202ENST00000381150 PTCH2Q9Y6C5 1203 aa13.72□□□□□ -0.21
SDC1-202ENST00000381150 LOC100506127A0A0U1RQW1 187 aa13.71□□□□□ -0.21
SDC1-202ENST00000381150 MYO1GB0I1T2 1018 aa13.71□□□□□ -0.21
SDC1-202ENST00000381150 IDH3BO43837 385 aa13.71□□□□□ -0.21
SDC1-202ENST00000381150 ALOX5P09917 674 aa13.71□□□□□ -0.21
SDC1-202ENST00000381150 CD47Q08722 323 aa13.71□□□□□ -0.21
SDC1-202ENST00000381150 KCNAB2Q13303 367 aa13.71□□□□□ -0.21
SDC1-202ENST00000381150 EIF4EBP2Q13542 120 aaPredicted RBP13.71□□□□□ -0.21
SDC1-202ENST00000381150 DAG1Q14118 895 aa13.71□□□□□ -0.21
SDC1-202ENST00000381150 C6orf141Q5SZD1 244 aa13.71□□□□□ -0.21
SDC1-202ENST00000381150 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.71□□□□□ -0.21
SDC1-202ENST00000381150 PM20D1Q6GTS8 502 aa13.71□□□□□ -0.21
SDC1-202ENST00000381150 MCFD2Q8NI22 146 aa13.71□□□□□ -0.21
SDC1-202ENST00000381150 MCOLN3Q8TDD5 553 aa13.71□□□□□ -0.21
SDC1-202ENST00000381150 SH3RF2Q8TEC5 729 aa13.71□□□□□ -0.21
SDC1-202ENST00000381150 FRS2Q8WU20 508 aa13.71□□□□□ -0.21
SDC1-202ENST00000381150 ISL2Q96A47 359 aa13.71□□□□□ -0.21
SDC1-202ENST00000381150 ZUFSPQ96AP4 578 aa13.71□□□□□ -0.21
SDC1-202ENST00000381150 OR12D3Q9UGF7 316 aa13.71□□□□□ -0.21
SDC1-202ENST00000381150 AZIN1O14977 448 aa13.71□□□□□ -0.22
SDC1-202ENST00000381150 ZNF37AP17032 561 aaPredicted RBP13.71□□□□□ -0.22
SDC1-202ENST00000381150 LBPP18428 481 aa13.71□□□□□ -0.22
SDC1-202ENST00000381150 SCNN1GP51170 649 aa13.71□□□□□ -0.22
SDC1-202ENST00000381150 NEK2P51955 445 aa13.71□□□□□ -0.22
SDC1-202ENST00000381150 VAC14Q08AM6 782 aa13.71□□□□□ -0.22
SDC1-202ENST00000381150 ARTNQ5T4W7 220 aa13.71□□□□□ -0.22
SDC1-202ENST00000381150 FAM171BQ6P995 826 aa13.71□□□□□ -0.22
SDC1-202ENST00000381150 CXCL17Q6UXB2 119 aa13.71□□□□□ -0.22
SDC1-202ENST00000381150 SERINC5Q86VE9 423 aa13.71□□□□□ -0.22
SDC1-202ENST00000381150 FNDC5Q8NAU1 212 aa13.71□□□□□ -0.22
SDC1-202ENST00000381150 PKMYT1Q99640 499 aa13.71□□□□□ -0.22
SDC1-202ENST00000381150 PARVBQ9HBI1 364 aa13.71□□□□□ -0.22
SDC1-202ENST00000381150 AMBNQ9NP70 447 aa13.71□□□□□ -0.22
SDC1-202ENST00000381150 UTS2RQ9UKP6 389 aa13.71□□□□□ -0.22
SDC1-202ENST00000381150 FAM50BQ9Y247 325 aa13.71□□□□□ -0.22
SDC1-202ENST00000381150 H0Y626 953 aa13.7□□□□□ -0.22
SDC1-202ENST00000381150 FXYD1O00168 92 aa13.7□□□□□ -0.22
SDC1-202ENST00000381150 MGEA5O60502 916 aa13.7□□□□□ -0.22
SDC1-202ENST00000381150 SOAT2O75908 522 aa13.7□□□□□ -0.22
SDC1-202ENST00000381150 TRIM16O95361 564 aa13.7□□□□□ -0.22
SDC1-202ENST00000381150 GSNP06396 782 aa13.7□□□□□ -0.22
SDC1-202ENST00000381150 RBP1P09455 135 aa13.7□□□□□ -0.22
SDC1-202ENST00000381150 CDH1P12830 882 aa13.7□□□□□ -0.22
SDC1-202ENST00000381150 TUFMP49411 452 aaKnown RBP13.7□□□□□ -0.22
SDC1-202ENST00000381150 ARPC4P59998 168 aa13.7□□□□□ -0.22
SDC1-202ENST00000381150 PHC1P78364 1004 aa13.7□□□□□ -0.22
SDC1-202ENST00000381150 PTPRCAPQ14761 206 aa13.7□□□□□ -0.22
SDC1-202ENST00000381150 TECRLQ5HYJ1 363 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms