RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 LATO43561 262 aa19.63■□□□□ 0.73
CLN3-205ENST00000359984 AP2A2O94973 939 aa19.63■□□□□ 0.73
CLN3-205ENST00000359984 OR56A5P0C7T3 313 aa19.63■□□□□ 0.73
CLN3-205ENST00000359984 CCDC166P0CW27 439 aa19.63■□□□□ 0.73
CLN3-205ENST00000359984 COL6A2P12110 1019 aa19.63■□□□□ 0.73
CLN3-205ENST00000359984 CCR3P51677 355 aa19.63■□□□□ 0.73
CLN3-205ENST00000359984 CDK3Q00526 305 aa19.63■□□□□ 0.73
CLN3-205ENST00000359984 C16orf46Q6P387 395 aa19.63■□□□□ 0.73
CLN3-205ENST00000359984 TBC1D1Q86TI0 1168 aaPredicted RBP19.63■□□□□ 0.73
CLN3-205ENST00000359984 NXNL1Q96CM4 212 aa19.63■□□□□ 0.73
CLN3-205ENST00000359984 FAM111AQ96PZ2 611 aa19.63■□□□□ 0.73
CLN3-205ENST00000359984 MYOCQ99972 504 aa19.63■□□□□ 0.73
CLN3-205ENST00000359984 LGR4Q9BXB1 951 aa19.63■□□□□ 0.73
CLN3-205ENST00000359984 GPR174Q9BXC1 333 aa19.63■□□□□ 0.73
CLN3-205ENST00000359984 TRIM39Q9HCM9 518 aa19.63■□□□□ 0.73
CLN3-205ENST00000359984 TRMT6Q9UJA5 497 aaKnown RBP19.63■□□□□ 0.73
CLN3-205ENST00000359984 EMCNQ9ULC0 261 aa19.63■□□□□ 0.73
CLN3-205ENST00000359984 GRID1Q9ULK0 1009 aa19.63■□□□□ 0.73
CLN3-205ENST00000359984 RUVBL2Q9Y230 463 aaKnown RBP19.63■□□□□ 0.73
CLN3-205ENST00000359984 DHRS7Q9Y394 339 aa19.63■□□□□ 0.73
CLN3-205ENST00000359984 ZNF37AP17032 561 aaPredicted RBP19.62■□□□□ 0.73
CLN3-205ENST00000359984 AOC1P19801 751 aa19.62■□□□□ 0.73
CLN3-205ENST00000359984 SKIV2L2P42285 1042 aaKnown RBP19.62■□□□□ 0.73
CLN3-205ENST00000359984 CTSCP53634 463 aa19.62■□□□□ 0.73
CLN3-205ENST00000359984 WDR4P57081 412 aaKnown RBP19.62■□□□□ 0.73
CLN3-205ENST00000359984 CSHL1Q14406 222 aa19.62■□□□□ 0.73
CLN3-205ENST00000359984 N4BP2L1Q5TBK1 243 aaPredicted RBP19.62■□□□□ 0.73
CLN3-205ENST00000359984 KIAA0895LQ68EN5 471 aa19.62■□□□□ 0.73
CLN3-205ENST00000359984 FUBP1Q96AE4 644 aaKnown RBP19.62■□□□□ 0.73
CLN3-205ENST00000359984 GPR78Q96P69 363 aa19.62■□□□□ 0.73
CLN3-205ENST00000359984 OR2AG1Q9H205 316 aa19.62■□□□□ 0.73
CLN3-205ENST00000359984 IGSF5Q9NSI5 407 aa19.62■□□□□ 0.73
CLN3-205ENST00000359984 TMEM216Q9P0N5 145 aa19.62■□□□□ 0.73
CLN3-205ENST00000359984 ATXN10Q9UBB4 475 aa19.62■□□□□ 0.73
CLN3-205ENST00000359984 OR1A2Q9Y585 309 aa19.62■□□□□ 0.73
CLN3-205ENST00000359984 TECTAO75443 2155 aa19.62■□□□□ 0.73
CLN3-205ENST00000359984 OR2AG2A6NM03 316 aa19.62■□□□□ 0.73
CLN3-205ENST00000359984 CDK14O94921 469 aa19.62■□□□□ 0.73
CLN3-205ENST00000359984 KLHL2O95198 593 aa19.62■□□□□ 0.73
CLN3-205ENST00000359984 IGHV4-34P06331 123 aa19.62■□□□□ 0.73
CLN3-205ENST00000359984 SLC26A3P40879 764 aa19.62■□□□□ 0.73
CLN3-205ENST00000359984 ETV4P43268 484 aa19.62■□□□□ 0.73
CLN3-205ENST00000359984 CCR5P51681 352 aa19.62■□□□□ 0.73
CLN3-205ENST00000359984 UGT3A1Q6NUS8 523 aa19.62■□□□□ 0.73
CLN3-205ENST00000359984 LCA5Q86VQ0 697 aa19.62■□□□□ 0.73
CLN3-205ENST00000359984 UNKQ9C0B0 810 aaKnown RBP19.62■□□□□ 0.73
CLN3-205ENST00000359984 ZCCHC2Q9C0B9 1178 aaKnown RBP19.62■□□□□ 0.73
CLN3-205ENST00000359984 ZMYND15Q9H091 742 aa19.62■□□□□ 0.73
CLN3-205ENST00000359984 WDR26Q9H7D7 661 aa19.62■□□□□ 0.73
CLN3-205ENST00000359984 EBF2Q9HAK2 575 aa19.62■□□□□ 0.73
CLN3-205ENST00000359984 INTS9Q9NV88 658 aaKnown RBP19.62■□□□□ 0.73
CLN3-205ENST00000359984 FSBPO95073 299 aa19.61■□□□□ 0.73
CLN3-205ENST00000359984 LTA4HP09960 611 aaKnown RBP19.61■□□□□ 0.73
CLN3-205ENST00000359984 SEPT7Q16181 437 aaKnown RBP19.61■□□□□ 0.73
CLN3-205ENST00000359984 LVRNQ6Q4G3 990 aa19.61■□□□□ 0.73
CLN3-205ENST00000359984 DENND6BQ8NEG7 585 aa19.61■□□□□ 0.73
CLN3-205ENST00000359984 INPP5DQ92835 1189 aa19.61■□□□□ 0.73
CLN3-205ENST00000359984 PANX3Q96QZ0 392 aa19.61■□□□□ 0.73
CLN3-205ENST00000359984 SYTL2Q9HCH5 934 aa19.61■□□□□ 0.73
CLN3-205ENST00000359984 LATS2Q9NRM7 1088 aa19.61■□□□□ 0.73
CLN3-205ENST00000359984 SPATS2LQ9NUQ6 558 aaKnown RBP19.61■□□□□ 0.73
CLN3-205ENST00000359984 SPATA6Q9NWH7 488 aaPredicted RBP19.61■□□□□ 0.73
CLN3-205ENST00000359984 INVSQ9Y283 1065 aa19.61■□□□□ 0.73
CLN3-205ENST00000359984 TMEM98Q9Y2Y6 226 aa19.61■□□□□ 0.73
CLN3-205ENST00000359984 BDP1A6H8Y1 2624 aa19.61■□□□□ 0.73
CLN3-205ENST00000359984 TMEM221A6NGB7 291 aa19.6■□□□□ 0.73
CLN3-205ENST00000359984 M0R296 226 aa19.6■□□□□ 0.73
CLN3-205ENST00000359984 VEGFDO43915 354 aa19.6■□□□□ 0.73
CLN3-205ENST00000359984 ASMTLO95671 621 aa19.6■□□□□ 0.73
CLN3-205ENST00000359984 HNRNPA2B1P22626 353 aaKnown RBP19.6■□□□□ 0.73
CLN3-205ENST00000359984 CLDN2P57739 230 aa19.6■□□□□ 0.73
CLN3-205ENST00000359984 TMEM220Q6QAJ8 160 aa19.6■□□□□ 0.73
CLN3-205ENST00000359984 KYAT3Q6YP21 454 aaKnown RBP19.6■□□□□ 0.73
CLN3-205ENST00000359984 BEND7Q8N7W2 519 aaPredicted RBP19.6■□□□□ 0.73
CLN3-205ENST00000359984 TSNARE1Q96NA8 513 aa19.6■□□□□ 0.73
CLN3-205ENST00000359984 EPHX3Q9H6B9 360 aa19.6■□□□□ 0.73
CLN3-205ENST00000359984 PHPT1Q9NRX4 125 aaPredicted RBP19.6■□□□□ 0.73
CLN3-205ENST00000359984 CA5BQ9Y2D0 317 aa19.6■□□□□ 0.73
CLN3-205ENST00000359984 POM121BA6NF01 834 aa19.6■□□□□ 0.73
CLN3-205ENST00000359984 AXIN1O15169 862 aa19.6■□□□□ 0.73
CLN3-205ENST00000359984 PLIN3O60664 434 aa19.6■□□□□ 0.73
CLN3-205ENST00000359984 PROCP04070 461 aa19.6■□□□□ 0.73
CLN3-205ENST00000359984 ZNF8P17098 575 aaPredicted RBP19.6■□□□□ 0.73
CLN3-205ENST00000359984 CCR7P32248 378 aa19.6■□□□□ 0.73
CLN3-205ENST00000359984 MDH1P40925 334 aaKnown RBP19.6■□□□□ 0.73
CLN3-205ENST00000359984 GLRBP48167 497 aa19.6■□□□□ 0.73
CLN3-205ENST00000359984 IRX4P78413 519 aa19.6■□□□□ 0.73
CLN3-205ENST00000359984 GUCY1A3Q02108 690 aa19.6■□□□□ 0.73
CLN3-205ENST00000359984 DMWDQ09019 674 aa19.6■□□□□ 0.73
CLN3-205ENST00000359984 FAM83EQ2M2I3 478 aa19.6■□□□□ 0.73
CLN3-205ENST00000359984 TSNAXIP1Q2TAA8 658 aa19.6■□□□□ 0.73
CLN3-205ENST00000359984 AGAP9Q5VTM2 703 aa19.6■□□□□ 0.73
CLN3-205ENST00000359984 NAPRTQ6XQN6 538 aa19.6■□□□□ 0.73
CLN3-205ENST00000359984 CPNE9Q8IYJ1 553 aa19.6■□□□□ 0.73
CLN3-205ENST00000359984 ARMC2Q8NEN0 867 aa19.6■□□□□ 0.73
CLN3-205ENST00000359984 BIRC7Q96CA5 298 aa19.6■□□□□ 0.73
CLN3-205ENST00000359984 PAIP2Q9BPZ3 127 aaKnown RBP19.6■□□□□ 0.73
CLN3-205ENST00000359984 APOOQ9BUR5 198 aa19.6■□□□□ 0.73
CLN3-205ENST00000359984 NMRAL1Q9HBL8 299 aa19.6■□□□□ 0.73
CLN3-205ENST00000359984 NCOR1O75376 2440 aa19.59■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms