RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 ATN1P54259 1190 aaPredicted RBP19.35■□□□□ 0.69
CCDC88B-202ENST00000356786 FAM182AQ5T1J6 154 aa19.35■□□□□ 0.69
CCDC88B-202ENST00000356786 OLFML2AQ68BL7 652 aa19.35■□□□□ 0.69
CCDC88B-202ENST00000356786 FAM220AQ7Z4H9 259 aa19.35■□□□□ 0.69
CCDC88B-202ENST00000356786 PEG10Q86TG7 708 aaKnown RBP19.35■□□□□ 0.69
CCDC88B-202ENST00000356786 SIPA1Q96FS4 1042 aa19.35■□□□□ 0.69
CCDC88B-202ENST00000356786 ART5Q96L15 291 aa19.35■□□□□ 0.69
CCDC88B-202ENST00000356786 PDGFDQ9GZP0 370 aaPredicted RBP19.35■□□□□ 0.69
CCDC88B-202ENST00000356786 SNTG1Q9NSN8 517 aa19.35■□□□□ 0.69
CCDC88B-202ENST00000356786 IGSF9Q9P2J2 1179 aa19.35■□□□□ 0.69
CCDC88B-202ENST00000356786 UGT2B17O75795 530 aa19.35■□□□□ 0.69
CCDC88B-202ENST00000356786 CCNYL3P0C7X3 344 aa19.35■□□□□ 0.69
CCDC88B-202ENST00000356786 POU2F1P14859 743 aa19.35■□□□□ 0.69
CCDC88B-202ENST00000356786 SULT1C3Q6IMI6 304 aa19.35■□□□□ 0.69
CCDC88B-202ENST00000356786 ABHD15Q6UXT9 468 aa19.35■□□□□ 0.69
CCDC88B-202ENST00000356786 TPGS1Q6ZTW0 290 aa19.35■□□□□ 0.69
CCDC88B-202ENST00000356786 CENPSQ8N2Z9 138 aa19.35■□□□□ 0.69
CCDC88B-202ENST00000356786 ST3GAL5Q9UNP4 418 aa19.35■□□□□ 0.69
CCDC88B-202ENST00000356786 ITPKAP23677 461 aa19.35■□□□□ 0.69
CCDC88B-202ENST00000356786 CXCR2P25025 360 aa19.35■□□□□ 0.69
CCDC88B-202ENST00000356786 RPL4P36578 427 aaKnown RBP19.35■□□□□ 0.69
CCDC88B-202ENST00000356786 HSPA7P48741 367 aa19.35■□□□□ 0.69
CCDC88B-202ENST00000356786 PSEN2P49810 448 aa19.35■□□□□ 0.69
CCDC88B-202ENST00000356786 E2F2Q14209 437 aa19.35■□□□□ 0.69
CCDC88B-202ENST00000356786 SH3PXD2AQ5TCZ1 1133 aa19.35■□□□□ 0.69
CCDC88B-202ENST00000356786 SDHAF4Q5VUM1 108 aa19.35■□□□□ 0.69
CCDC88B-202ENST00000356786 C11orf65Q8NCR3 313 aa19.35■□□□□ 0.69
CCDC88B-202ENST00000356786 FCGR1BQ92637 280 aa19.35■□□□□ 0.69
CCDC88B-202ENST00000356786 LRRC3Q9BY71 257 aa19.35■□□□□ 0.69
CCDC88B-202ENST00000356786 IGLV3-22A0A075B6J6 115 aa19.34■□□□□ 0.69
CCDC88B-202ENST00000356786 IRGMA1A4Y4 181 aa19.34■□□□□ 0.69
CCDC88B-202ENST00000356786 ADAMDEC1O15204 470 aa19.34■□□□□ 0.69
CCDC88B-202ENST00000356786 MSI1O43347 362 aaKnown RBP19.34■□□□□ 0.69
CCDC88B-202ENST00000356786 DLDP09622 509 aaKnown RBP19.34■□□□□ 0.69
CCDC88B-202ENST00000356786 IFI30P13284 250 aa19.34■□□□□ 0.69
CCDC88B-202ENST00000356786 ARF5P84085 180 aa19.34■□□□□ 0.69
CCDC88B-202ENST00000356786 SLC18A2Q05940 514 aa19.34■□□□□ 0.69
CCDC88B-202ENST00000356786 FAM174BQ3ZCQ3 159 aa19.34■□□□□ 0.69
CCDC88B-202ENST00000356786 C9orf131Q5VYM1 1079 aa19.34■□□□□ 0.69
CCDC88B-202ENST00000356786 ZNF655Q8N720 491 aaPredicted RBP19.34■□□□□ 0.69
CCDC88B-202ENST00000356786 ADAM2Q99965 735 aa19.34■□□□□ 0.69
CCDC88B-202ENST00000356786 AKAP7Q9P0M2 348 aaPredicted RBP19.34■□□□□ 0.69
CCDC88B-202ENST00000356786 TOPAZ1Q8N9V7 1692 aa19.34■□□□□ 0.69
CCDC88B-202ENST00000356786 PARP4Q9UKK3 1724 aaKnown RBP19.34■□□□□ 0.69
CCDC88B-202ENST00000356786 IQCMA0A1B0GVH7 501 aa19.34■□□□□ 0.69
CCDC88B-202ENST00000356786 CDH12P55289 794 aa19.34■□□□□ 0.69
CCDC88B-202ENST00000356786 GAD2Q05329 585 aa19.34■□□□□ 0.69
CCDC88B-202ENST00000356786 NPTX1Q15818 432 aa19.34■□□□□ 0.69
CCDC88B-202ENST00000356786 MSS51Q4VC12 460 aa19.34■□□□□ 0.69
CCDC88B-202ENST00000356786 USP43Q70EL4 1123 aa19.34■□□□□ 0.69
CCDC88B-202ENST00000356786 TAF8Q7Z7C8 310 aa19.34■□□□□ 0.69
CCDC88B-202ENST00000356786 CCDC36Q8IYA8 594 aa19.34■□□□□ 0.69
CCDC88B-202ENST00000356786 GRIN3AQ8TCU5 1115 aa19.34■□□□□ 0.69
CCDC88B-202ENST00000356786 ZW10O43264 779 aa19.34■□□□□ 0.69
CCDC88B-202ENST00000356786 GRIN3BO60391 1043 aa19.34■□□□□ 0.69
CCDC88B-202ENST00000356786 DDNO94850 711 aaPredicted RBP19.34■□□□□ 0.69
CCDC88B-202ENST00000356786 C8BP07358 591 aa19.34■□□□□ 0.69
CCDC88B-202ENST00000356786 HUNKP57058 714 aa19.34■□□□□ 0.69
CCDC88B-202ENST00000356786 UBE2R2Q712K3 238 aaPredicted RBP19.34■□□□□ 0.69
CCDC88B-202ENST00000356786 CLP1Q92989 425 aaKnown RBP19.34■□□□□ 0.69
CCDC88B-202ENST00000356786 AARSD1Q9BTE6 412 aaKnown RBP19.34■□□□□ 0.69
CCDC88B-202ENST00000356786 DCSTAMPQ9H295 470 aa19.34■□□□□ 0.69
CCDC88B-202ENST00000356786 ATP13A3Q9H7F0 1226 aa19.34■□□□□ 0.69
CCDC88B-202ENST00000356786 MAGEE1Q9HCI5 957 aa19.34■□□□□ 0.69
CCDC88B-202ENST00000356786 MAPK8P45983 427 aa19.34■□□□□ 0.69
CCDC88B-202ENST00000356786 CCDC157Q569K6 752 aa19.34■□□□□ 0.69
CCDC88B-202ENST00000356786 RBM48Q5RL73 367 aaKnown RBP19.34■□□□□ 0.69
CCDC88B-202ENST00000356786 SLC22A16Q86VW1 577 aa19.34■□□□□ 0.69
CCDC88B-202ENST00000356786 TREML1Q86YW5 311 aa19.34■□□□□ 0.69
CCDC88B-202ENST00000356786 DENND1CQ8IV53 801 aa19.34■□□□□ 0.69
CCDC88B-202ENST00000356786 CHPFQ8IZ52 775 aa19.34■□□□□ 0.69
CCDC88B-202ENST00000356786 OR5K1Q8NHB7 308 aa19.34■□□□□ 0.69
CCDC88B-202ENST00000356786 SLC13A3Q8WWT9 602 aa19.34■□□□□ 0.69
CCDC88B-202ENST00000356786 FAM208AQ9UK61 1670 aaKnown RBP19.33■□□□□ 0.69
CCDC88B-202ENST00000356786 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP19.33■□□□□ 0.69
CCDC88B-202ENST00000356786 TRIM64CA6NLI5 447 aa19.33■□□□□ 0.69
CCDC88B-202ENST00000356786 ARPC2O15144 300 aa19.33■□□□□ 0.69
CCDC88B-202ENST00000356786 ATF6P18850 670 aa19.33■□□□□ 0.69
CCDC88B-202ENST00000356786 MANFP55145 182 aaKnown RBP19.33■□□□□ 0.69
CCDC88B-202ENST00000356786 SLC25A24Q6NUK1 477 aa19.33■□□□□ 0.69
CCDC88B-202ENST00000356786 ITIH5Q86UX2 942 aa19.33■□□□□ 0.69
CCDC88B-202ENST00000356786 GTPBP3Q969Y2 492 aaKnown RBP19.33■□□□□ 0.69
CCDC88B-202ENST00000356786 EIF2B3Q9NR50 452 aaKnown RBP19.33■□□□□ 0.69
CCDC88B-202ENST00000356786 SEC14L3Q9UDX4 400 aa19.33■□□□□ 0.69
CCDC88B-202ENST00000356786 PRAMEF33A0A0G2JMD5 474 aa19.33■□□□□ 0.69
CCDC88B-202ENST00000356786 NOTOA8MTQ0 251 aa19.33■□□□□ 0.69
CCDC88B-202ENST00000356786 KPNA6O60684 536 aa19.33■□□□□ 0.69
CCDC88B-202ENST00000356786 PRAMEF10O60809 474 aa19.33■□□□□ 0.69
CCDC88B-202ENST00000356786 IL1R2P27930 398 aa19.33■□□□□ 0.69
CCDC88B-202ENST00000356786 ALDH3A2P51648 485 aa19.33■□□□□ 0.69
CCDC88B-202ENST00000356786 SH3D19Q5HYK7 790 aa19.33■□□□□ 0.69
CCDC88B-202ENST00000356786 C9orf57Q5W0N0 161 aa19.33■□□□□ 0.69
CCDC88B-202ENST00000356786 NCCRP1Q6ZVX7 275 aaPredicted RBP19.33■□□□□ 0.69
CCDC88B-202ENST00000356786 C7orf43Q8WVR3 580 aa19.33■□□□□ 0.69
CCDC88B-202ENST00000356786 TRNT1Q96Q11 434 aaKnown RBP19.33■□□□□ 0.69
CCDC88B-202ENST00000356786 RHBGQ9H310 441 aa19.33■□□□□ 0.69
CCDC88B-202ENST00000356786 PIGUQ9H490 435 aa19.33■□□□□ 0.69
CCDC88B-202ENST00000356786 FZD1Q9UP38 647 aa19.33■□□□□ 0.69
CCDC88B-202ENST00000356786 FAM25EA8MYX2 175 aa19.33■□□□□ 0.68
CCDC88B-202ENST00000356786 CLPXO76031 633 aa19.33■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms