RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 GALNT13Q8IUC8 556 aa21.87■■□□□ 1.09
SDC3-202ENST00000339394 UBLCP1Q8WVY7 318 aaPredicted RBP21.87■■□□□ 1.09
SDC3-202ENST00000339394 ZNF514Q96K75 400 aaPredicted RBP21.87■■□□□ 1.09
SDC3-202ENST00000339394 BIRC8Q96P09 236 aa21.87■■□□□ 1.09
SDC3-202ENST00000339394 CYTH2Q99418 400 aa21.87■■□□□ 1.09
SDC3-202ENST00000339394 ACSS3Q9H6R3 686 aa21.87■■□□□ 1.09
SDC3-202ENST00000339394 SEMA4GQ9NTN9 838 aa21.87■■□□□ 1.09
SDC3-202ENST00000339394 KNL1Q8NG31 2342 aa21.86■■□□□ 1.09
SDC3-202ENST00000339394 A0A087WUV0 522 aaPredicted RBP21.86■■□□□ 1.09
SDC3-202ENST00000339394 AP2A2O94973 939 aa21.86■■□□□ 1.09
SDC3-202ENST00000339394 ABHD2P08910 425 aa21.86■■□□□ 1.09
SDC3-202ENST00000339394 ENGP17813 658 aa21.86■■□□□ 1.09
SDC3-202ENST00000339394 EFTUD2Q15029 972 aaKnown RBP eCLIP21.86■■□□□ 1.09
SDC3-202ENST00000339394 SF3A2Q15428 464 aaKnown RBP21.86■■□□□ 1.09
SDC3-202ENST00000339394 MAP9Q49MG5 647 aa21.86■■□□□ 1.09
SDC3-202ENST00000339394 CNSTQ6PJW8 725 aa21.86■■□□□ 1.09
SDC3-202ENST00000339394 CRTC3Q6UUV7 619 aa21.86■■□□□ 1.09
SDC3-202ENST00000339394 STRA8Q7Z7C7 330 aa21.86■■□□□ 1.09
SDC3-202ENST00000339394 LRRTM4Q86VH4 590 aa21.86■■□□□ 1.09
SDC3-202ENST00000339394 PHACTR4Q8IZ21 702 aa21.86■■□□□ 1.09
SDC3-202ENST00000339394 BEND7Q8N7W2 519 aaPredicted RBP21.86■■□□□ 1.09
SDC3-202ENST00000339394 SLC13A1Q9BZW2 595 aa21.86■■□□□ 1.09
SDC3-202ENST00000339394 TM7SF3Q9NS93 570 aa21.86■■□□□ 1.09
SDC3-202ENST00000339394 NSMCE4AQ9NXX6 385 aa21.86■■□□□ 1.09
SDC3-202ENST00000339394 GPSM3Q9Y4H4 160 aa21.86■■□□□ 1.09
SDC3-202ENST00000339394 LNP1A1A4G5 178 aa21.85■■□□□ 1.09
SDC3-202ENST00000339394 LRP3O75074 770 aa21.85■■□□□ 1.09
SDC3-202ENST00000339394 RPS3P23396 243 aaKnown RBP eCLIP21.85■■□□□ 1.09
SDC3-202ENST00000339394 FMO4P31512 558 aa21.85■■□□□ 1.09
SDC3-202ENST00000339394 EIF3BP55884 814 aaKnown RBP21.85■■□□□ 1.09
SDC3-202ENST00000339394 BRD3Q15059 726 aa21.85■■□□□ 1.09
SDC3-202ENST00000339394 UAP1Q16222 522 aaPredicted RBP21.85■■□□□ 1.09
SDC3-202ENST00000339394 ZNF423Q2M1K9 1284 aa21.85■■□□□ 1.09
SDC3-202ENST00000339394 C11orf96Q7Z7L8 435 aa21.85■■□□□ 1.09
SDC3-202ENST00000339394 LRRC6Q86X45 466 aa21.85■■□□□ 1.09
SDC3-202ENST00000339394 DCLK2Q8N568 766 aa21.85■■□□□ 1.09
SDC3-202ENST00000339394 OXR1Q8N573 874 aa21.85■■□□□ 1.09
SDC3-202ENST00000339394 PPM1NQ8N819 430 aa21.85■■□□□ 1.09
SDC3-202ENST00000339394 GTPBP2Q9BX10 602 aaKnown RBP21.85■■□□□ 1.09
SDC3-202ENST00000339394 TMEM168Q9H0V1 697 aa21.85■■□□□ 1.09
SDC3-202ENST00000339394 GAREM1Q9H706 876 aa21.85■■□□□ 1.09
SDC3-202ENST00000339394 APOBEC3BQ9UH17 382 aaKnown RBP21.85■■□□□ 1.09
SDC3-202ENST00000339394 CCDC151A5D8V7 595 aa21.84■■□□□ 1.09
SDC3-202ENST00000339394 KMOO15229 486 aa21.84■■□□□ 1.09
SDC3-202ENST00000339394 OR56A5P0C7T3 313 aa21.84■■□□□ 1.09
SDC3-202ENST00000339394 HSD17B3P37058 310 aa21.84■■□□□ 1.09
SDC3-202ENST00000339394 RXRGP48443 463 aa21.84■■□□□ 1.09
SDC3-202ENST00000339394 ARRB1P49407 418 aaPredicted RBP21.84■■□□□ 1.09
SDC3-202ENST00000339394 PRLHRP49683 370 aa21.84■■□□□ 1.09
SDC3-202ENST00000339394 HNRNPKP61978 463 aaKnown RBP eCLIP21.84■■□□□ 1.09
SDC3-202ENST00000339394 CSRP2Q16527 193 aa21.84■■□□□ 1.09
SDC3-202ENST00000339394 BCL7AQ4VC05 210 aa21.84■■□□□ 1.09
SDC3-202ENST00000339394 CHST15Q7LFX5 561 aaPredicted RBP21.84■■□□□ 1.09
SDC3-202ENST00000339394 OR2I1PQ8NGU4 316 aa21.84■■□□□ 1.09
SDC3-202ENST00000339394 OR2M4Q96R27 311 aa21.84■■□□□ 1.09
SDC3-202ENST00000339394 IL21RQ9HBE5 538 aa21.84■■□□□ 1.09
SDC3-202ENST00000339394 TRNAU1APQ9NX07 287 aaKnown RBP21.84■■□□□ 1.09
SDC3-202ENST00000339394 QSOX1O00391 747 aa21.83■■□□□ 1.09
SDC3-202ENST00000339394 POP7O75817 140 aaKnown RBP21.83■■□□□ 1.09
SDC3-202ENST00000339394 ESR1P03372 595 aa21.83■■□□□ 1.09
SDC3-202ENST00000339394 TGM1P22735 817 aa21.83■■□□□ 1.09
SDC3-202ENST00000339394 ABCG1P45844 678 aa21.83■■□□□ 1.09
SDC3-202ENST00000339394 CD151P48509 253 aa21.83■■□□□ 1.09
SDC3-202ENST00000339394 SHBQ15464 509 aa21.83■■□□□ 1.09
SDC3-202ENST00000339394 TCEA2Q15560 299 aa21.83■■□□□ 1.09
SDC3-202ENST00000339394 PRRT3Q5FWE3 981 aa21.83■■□□□ 1.09
SDC3-202ENST00000339394 CTSL3PQ5NE16 218 aa21.83■■□□□ 1.09
SDC3-202ENST00000339394 PTRHD1Q6GMV3 140 aaKnown RBP21.83■■□□□ 1.09
SDC3-202ENST00000339394 ZNF549Q6P9A3 640 aa21.83■■□□□ 1.09
SDC3-202ENST00000339394 ASCL5Q7RTU5 278 aa21.83■■□□□ 1.09
SDC3-202ENST00000339394 LINC00615Q96LM1 132 aaPredicted RBP21.83■■□□□ 1.09
SDC3-202ENST00000339394 CPNE1Q99829 537 aa21.83■■□□□ 1.09
SDC3-202ENST00000339394 MCMBPQ9BTE3 642 aa21.83■■□□□ 1.09
SDC3-202ENST00000339394 PARD6AQ9NPB6 346 aa21.83■■□□□ 1.09
SDC3-202ENST00000339394 TXNDC16Q9P2K2 825 aa21.83■■□□□ 1.09
SDC3-202ENST00000339394 SLC23A2Q9UGH3 650 aa21.83■■□□□ 1.09
SDC3-202ENST00000339394 GNPTGQ9UJJ9 305 aa21.83■■□□□ 1.09
SDC3-202ENST00000339394 PLEKHM1Q9Y4G2 1056 aa21.83■■□□□ 1.09
SDC3-202ENST00000339394 PCDHB1Q9Y5F3 818 aa21.83■■□□□ 1.09
SDC3-202ENST00000339394 ST14Q9Y5Y6 855 aa21.83■■□□□ 1.09
SDC3-202ENST00000339394 CACNA1EQ15878 2313 aa21.83■■□□□ 1.09
SDC3-202ENST00000339394 A0A1B0GTQ1 180 aa21.82■■□□□ 1.08
SDC3-202ENST00000339394 IQCF5A8MTL0 148 aa21.82■■□□□ 1.08
SDC3-202ENST00000339394 H3BM21 787 aa21.82■■□□□ 1.08
SDC3-202ENST00000339394 DFNA5O60443 496 aa21.82■■□□□ 1.08
SDC3-202ENST00000339394 ERLIN1O75477 346 aa21.82■■□□□ 1.08
SDC3-202ENST00000339394 CER1O95813 267 aa21.82■■□□□ 1.08
SDC3-202ENST00000339394 CTSEP14091 401 aa21.82■■□□□ 1.08
SDC3-202ENST00000339394 NAB1Q13506 487 aa21.82■■□□□ 1.08
SDC3-202ENST00000339394 PLA2G4EQ3MJ16 856 aa21.82■■□□□ 1.08
SDC3-202ENST00000339394 CCL4L1Q8NHW4 92 aa21.82■■□□□ 1.08
SDC3-202ENST00000339394 MRRFQ96E11 262 aaKnown RBP21.82■■□□□ 1.08
SDC3-202ENST00000339394 LRRC61Q9BV99 259 aa21.82■■□□□ 1.08
SDC3-202ENST00000339394 DNMT3AQ9Y6K1 912 aaPredicted RBP21.82■■□□□ 1.08
SDC3-202ENST00000339394 PLXNB3Q9ULL4 1909 aa21.82■■□□□ 1.08
SDC3-202ENST00000339394 OTOGLQ3ZCN5 2332 aa21.82■■□□□ 1.08
SDC3-202ENST00000339394 SDC3O75056 442 aa21.82■■□□□ 1.08
SDC3-202ENST00000339394 PIAS2O75928 621 aa21.82■■□□□ 1.08
SDC3-202ENST00000339394 FAM155BO75949 473 aa21.82■■□□□ 1.08
SDC3-202ENST00000339394 ACP5P13686 325 aa21.82■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms