RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 NR1D2Q14995 579 aa7.73□□□□□ -1.17
SCN9A-201ENST00000303354 FASTKD3Q14CZ7 662 aaKnown RBP7.73□□□□□ -1.17
SCN9A-201ENST00000303354 XKR8Q9H6D3 395 aa7.73□□□□□ -1.17
SCN9A-201ENST00000303354 MED31Q9Y3C7 131 aa7.73□□□□□ -1.17
SCN9A-201ENST00000303354 HBS1LQ9Y450 684 aaKnown RBP7.73□□□□□ -1.17
SCN9A-201ENST00000303354 CLCA3PQ9Y6N3 262 aa7.73□□□□□ -1.17
SCN9A-201ENST00000303354 HCN1O60741 890 aa7.73□□□□□ -1.17
SCN9A-201ENST00000303354 OTCP00480 354 aa7.73□□□□□ -1.17
SCN9A-201ENST00000303354 CYP1A2P05177 515 aa7.73□□□□□ -1.17
SCN9A-201ENST00000303354 NCK1P16333 377 aa7.73□□□□□ -1.17
SCN9A-201ENST00000303354 ECT2LQ008S8 904 aa7.73□□□□□ -1.17
SCN9A-201ENST00000303354 PPM1MQ96MI6 270 aa7.73□□□□□ -1.17
SCN9A-201ENST00000303354 NOL6Q9H6R4 1146 aaKnown RBP7.73□□□□□ -1.17
SCN9A-201ENST00000303354 ANKZF1Q9H8Y5 726 aa7.73□□□□□ -1.17
SCN9A-201ENST00000303354 ADGRE2Q9UHX3 823 aa7.73□□□□□ -1.17
SCN9A-201ENST00000303354 RWDD3Q9Y3V2 267 aa7.73□□□□□ -1.17
SCN9A-201ENST00000303354 DGKBQ9Y6T7 804 aa7.73□□□□□ -1.17
SCN9A-201ENST00000303354 LRIG2O94898 1065 aa7.73□□□□□ -1.17
SCN9A-201ENST00000303354 POP4O95707 220 aaKnown RBP7.73□□□□□ -1.17
SCN9A-201ENST00000303354 TYRP14679 529 aa7.73□□□□□ -1.17
SCN9A-201ENST00000303354 AGXTP21549 392 aa7.73□□□□□ -1.17
SCN9A-201ENST00000303354 ADRA1BP35368 520 aa7.73□□□□□ -1.17
SCN9A-201ENST00000303354 MEF2AQ02078 507 aaPredicted RBP7.73□□□□□ -1.17
SCN9A-201ENST00000303354 GANABQ14697 944 aaKnown RBP7.73□□□□□ -1.17
SCN9A-201ENST00000303354 TPRG1Q6ZUI0 275 aa7.73□□□□□ -1.17
SCN9A-201ENST00000303354 LPCAT2Q7L5N7 544 aa7.73□□□□□ -1.17
SCN9A-201ENST00000303354 GPR151Q8TDV0 419 aa7.73□□□□□ -1.17
SCN9A-201ENST00000303354 BDH2Q9BUT1 245 aa7.73□□□□□ -1.17
SCN9A-201ENST00000303354 IPPKQ9H8X2 491 aa7.73□□□□□ -1.17
SCN9A-201ENST00000303354 APOBEC3GQ9HC16 384 aaKnown RBP7.73□□□□□ -1.17
SCN9A-201ENST00000303354 EIF2B4Q9UI10 523 aaKnown RBP7.73□□□□□ -1.17
SCN9A-201ENST00000303354 ZNF222Q9UK12 451 aa7.73□□□□□ -1.17
SCN9A-201ENST00000303354 STXBP5LQ9Y2K9 1186 aa7.73□□□□□ -1.17
SCN9A-201ENST00000303354 XKRYO14609 159 aa7.73□□□□□ -1.17
SCN9A-201ENST00000303354 CHRNA1P02708 482 aa7.73□□□□□ -1.17
SCN9A-201ENST00000303354 PIK3R1P27986 724 aa7.73□□□□□ -1.17
SCN9A-201ENST00000303354 RAD23AP54725 363 aa7.73□□□□□ -1.17
SCN9A-201ENST00000303354 PGBD2Q6P3X8 592 aa7.73□□□□□ -1.17
SCN9A-201ENST00000303354 HFE2Q6ZVN8 426 aa7.73□□□□□ -1.17
SCN9A-201ENST00000303354 GALNT7Q86SF2 657 aa7.73□□□□□ -1.17
SCN9A-201ENST00000303354 SFRP1Q8N474 314 aa7.73□□□□□ -1.17
SCN9A-201ENST00000303354 VAT1Q99536 393 aa7.73□□□□□ -1.17
SCN9A-201ENST00000303354 MRPS33Q9Y291 106 aaKnown RBP7.73□□□□□ -1.17
SCN9A-201ENST00000303354 LOC105378220A0A1B0GUY1 285 aaPredicted RBP7.72□□□□□ -1.17
SCN9A-201ENST00000303354 ZNF860A6NHJ4 632 aa7.72□□□□□ -1.17
SCN9A-201ENST00000303354 MAGEB3O15480 346 aa7.72□□□□□ -1.17
SCN9A-201ENST00000303354 NDUFS4O43181 175 aa7.72□□□□□ -1.17
SCN9A-201ENST00000303354 PKMP14618 531 aaKnown RBP7.72□□□□□ -1.17
SCN9A-201ENST00000303354 CDH5P33151 784 aaPredicted RBP7.72□□□□□ -1.17
SCN9A-201ENST00000303354 DNASE1L1P49184 302 aa7.72□□□□□ -1.17
SCN9A-201ENST00000303354 NTHL1P78549 312 aa7.72□□□□□ -1.17
SCN9A-201ENST00000303354 SRYQ05066 204 aa7.72□□□□□ -1.17
SCN9A-201ENST00000303354 TMEM156Q8N614 296 aa7.72□□□□□ -1.17
SCN9A-201ENST00000303354 SH3GL3Q99963 347 aa7.72□□□□□ -1.17
SCN9A-201ENST00000303354 SEC61A2Q9H9S3 476 aa7.72□□□□□ -1.17
SCN9A-201ENST00000303354 MEAF6Q9HAF1 191 aa7.72□□□□□ -1.17
SCN9A-201ENST00000303354 KCTD5Q9NXV2 234 aa7.72□□□□□ -1.17
SCN9A-201ENST00000303354 hCG_2039718K7EN88 272 aa7.72□□□□□ -1.17
SCN9A-201ENST00000303354 ANXA4P09525 319 aaPredicted RBP7.72□□□□□ -1.17
SCN9A-201ENST00000303354 C1QTNF8P60827 252 aa7.72□□□□□ -1.17
SCN9A-201ENST00000303354 CHIT1Q13231 466 aa7.72□□□□□ -1.17
SCN9A-201ENST00000303354 MTA1Q13330 715 aa7.72□□□□□ -1.17
SCN9A-201ENST00000303354 FRG1Q14331 258 aaKnown RBP7.72□□□□□ -1.17
SCN9A-201ENST00000303354 ZACNQ401N2 412 aa7.72□□□□□ -1.17
SCN9A-201ENST00000303354 CYB5D1Q6P9G0 228 aa7.72□□□□□ -1.17
SCN9A-201ENST00000303354 KDM7AQ6ZMT4 941 aa7.72□□□□□ -1.17
SCN9A-201ENST00000303354 BPIFB1Q8TDL5 484 aa7.72□□□□□ -1.17
SCN9A-201ENST00000303354 UBE2E3Q969T4 207 aa7.72□□□□□ -1.17
SCN9A-201ENST00000303354 BTBD10Q9BSF8 475 aa7.72□□□□□ -1.17
SCN9A-201ENST00000303354 PAIP1Q9H074 479 aaKnown RBP7.72□□□□□ -1.17
SCN9A-201ENST00000303354 RC3H2Q9HBD1 1191 aaKnown RBP7.72□□□□□ -1.17
SCN9A-201ENST00000303354 NKIRAS2Q9NYR9 191 aa7.72□□□□□ -1.17
SCN9A-201ENST00000303354 TSC22D4Q9Y3Q8 395 aa7.72□□□□□ -1.17
SCN9A-201ENST00000303354 CHADO15335 359 aa7.72□□□□□ -1.17
SCN9A-201ENST00000303354 KERAO60938 352 aa7.72□□□□□ -1.17
SCN9A-201ENST00000303354 KRT75O95678 551 aa7.72□□□□□ -1.17
SCN9A-201ENST00000303354 CCND1P24385 295 aa7.72□□□□□ -1.17
SCN9A-201ENST00000303354 DDX6P26196 483 aaKnown RBP eCLIP7.72□□□□□ -1.17
SCN9A-201ENST00000303354 PRRT3Q5FWE3 981 aa7.72□□□□□ -1.17
SCN9A-201ENST00000303354 FRRS1Q6ZNA5 592 aa7.72□□□□□ -1.17
SCN9A-201ENST00000303354 RPS27LQ71UM5 84 aaKnown RBP7.72□□□□□ -1.17
SCN9A-201ENST00000303354 GALNT10Q86SR1 603 aa7.72□□□□□ -1.17
SCN9A-201ENST00000303354 C12orf56Q8IXR9 622 aa7.72□□□□□ -1.17
SCN9A-201ENST00000303354 UNC5BQ8IZJ1 945 aa7.72□□□□□ -1.17
SCN9A-201ENST00000303354 MTERF1Q99551 399 aaKnown RBP7.72□□□□□ -1.17
SCN9A-201ENST00000303354 CCDC177Q9NQR7 707 aaPredicted RBP7.72□□□□□ -1.17
SCN9A-201ENST00000303354 CLN6Q9NWW5 311 aa7.72□□□□□ -1.17
SCN9A-201ENST00000303354 SAMHD1Q9Y3Z3 626 aaKnown RBP7.72□□□□□ -1.17
SCN9A-201ENST00000303354 NR2E1Q9Y466 385 aa7.72□□□□□ -1.17
SCN9A-201ENST00000303354 NOX1Q9Y5S8 564 aa7.72□□□□□ -1.17
SCN9A-201ENST00000303354 CYP3A7-CYP3A51PA0A087WV96 503 aa7.72□□□□□ -1.17
SCN9A-201ENST00000303354 MUSKO15146 869 aa7.72□□□□□ -1.17
SCN9A-201ENST00000303354 ASNA1O43681 348 aa7.72□□□□□ -1.17
SCN9A-201ENST00000303354 MLYCDO95822 493 aa7.72□□□□□ -1.17
SCN9A-201ENST00000303354 CYP3A7P24462 503 aa7.72□□□□□ -1.17
SCN9A-201ENST00000303354 RAB8AP61006 207 aa7.72□□□□□ -1.17
SCN9A-201ENST00000303354 PUM1Q14671 1186 aaKnown RBP eCLIP7.72□□□□□ -1.17
SCN9A-201ENST00000303354 GRM3Q14832 879 aa7.72□□□□□ -1.17
SCN9A-201ENST00000303354 MTX3Q5HYI7 312 aa7.72□□□□□ -1.17
SCN9A-201ENST00000303354 PAPD7Q5XG87 772 aaKnown RBP7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms