RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 GNPDA1P46926 289 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 GABRB2P47870 512 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 SMAD3P84022 425 aaKnown RBP10.3□□□□□ -0.76
CLIP1-201ENST00000302528 ITGA7Q13683 1181 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 TOR1AIP1Q5JTV8 583 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 CERCAMQ5T4B2 595 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 IDNKQ5T6J7 187 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 FAM183BPQ6ZVS7 135 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 TMEM199Q8N511 208 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 MTMR9Q96QG7 549 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 ABHD16BQ9H3Z7 469 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 LRTM1Q9HBL6 345 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 TMEM165Q9HC07 324 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 SNX15Q9NRS6 342 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 CUEDC1Q9NWM3 386 aaPredicted RBP10.3□□□□□ -0.76
CLIP1-201ENST00000302528 ZNF180Q9UJW8 692 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 FBXO5Q9UKT4 447 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 USP20Q9Y2K6 914 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 TRAF6Q9Y4K3 522 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 PDPK1O15530 556 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 FGF1P05230 155 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 ICAM3P32942 547 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 S100A12P80511 92 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 LACTB2Q53H82 288 aaPredicted RBP10.3□□□□□ -0.76
CLIP1-201ENST00000302528 ALG10BQ5I7T1 473 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 USP30Q70CQ3 517 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 ALYREFQ86V81 257 aaKnown RBP10.3□□□□□ -0.76
CLIP1-201ENST00000302528 SPPL2CQ8IUH8 684 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 FIBCD1Q8N539 461 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 CCDC107Q8WV48 283 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 RBM18Q96H35 190 aaKnown RBP10.3□□□□□ -0.76
CLIP1-201ENST00000302528 MYO19Q96H55 970 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 COLEC10Q9Y6Z7 277 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 AIREO43918 545 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 CLPXO76031 633 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 ANGPTL1O95841 491 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 CAPZA1P52907 286 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 XKR4Q5GH76 650 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 PITRM1Q5JRX3 1037 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 SLC8B1Q6J4K2 584 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 CUZD1Q86UP6 607 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 HDDC3Q8N4P3 179 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 GMCL1P1Q8NEA9 526 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 SNRNP25Q9BV90 132 aaKnown RBP10.3□□□□□ -0.76
CLIP1-201ENST00000302528 OR51V1Q9H2C8 321 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 TRPV4Q9HBA0 871 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 UCKL1Q9NWZ5 548 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 CEMIPQ8WUJ3 1361 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 SIGLEC16A6NMB1 481 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 ZNF878C9JN71 531 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 DDX6P26196 483 aaKnown RBP eCLIP10.3□□□□□ -0.76
CLIP1-201ENST00000302528 CLCN7P51798 805 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 SGCBQ16585 318 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 KLHL26Q53HC5 615 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 FAM76BQ5HYJ3 339 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 ZNF311Q5JNZ3 666 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 SPIN3Q5JUX0 258 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 METTL21CQ5VZV1 264 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 FAM129CQ86XR2 697 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 CPSF7Q8N684 471 aaKnown RBP10.3□□□□□ -0.76
CLIP1-201ENST00000302528 PNLDC1Q8NA58 520 aaKnown RBP10.3□□□□□ -0.76
CLIP1-201ENST00000302528 HDAC7Q8WUI4 952 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 PRMT6Q96LA8 375 aaPredicted RBP10.3□□□□□ -0.76
CLIP1-201ENST00000302528 XKR8Q9H6D3 395 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 VWA7Q9Y334 891 aa10.3□□□□□ -0.76
CLIP1-201ENST00000302528 H0YJX3 145 aa10.29□□□□□ -0.76
CLIP1-201ENST00000302528 PITPNM1O00562 1244 aa10.29□□□□□ -0.76
CLIP1-201ENST00000302528 PER2O15055 1255 aa10.29□□□□□ -0.76
CLIP1-201ENST00000302528 ATG13O75143 517 aa10.29□□□□□ -0.76
CLIP1-201ENST00000302528 TULP3O75386 442 aa10.29□□□□□ -0.76
CLIP1-201ENST00000302528 LYPLA1O75608 230 aaPredicted RBP10.29□□□□□ -0.76
CLIP1-201ENST00000302528 CMPK1P30085 196 aa10.29□□□□□ -0.76
CLIP1-201ENST00000302528 RARRES1P49788 294 aa10.29□□□□□ -0.76
CLIP1-201ENST00000302528 AFF1P51825 1210 aaKnown RBP10.29□□□□□ -0.76
CLIP1-201ENST00000302528 ZNF143P52747 638 aaPredicted RBP10.29□□□□□ -0.76
CLIP1-201ENST00000302528 RHEBQ15382 184 aa10.29□□□□□ -0.76
CLIP1-201ENST00000302528 PRR23BQ6ZRT6 265 aa10.29□□□□□ -0.76
CLIP1-201ENST00000302528 NAT16Q8N8M0 369 aa10.29□□□□□ -0.76
CLIP1-201ENST00000302528 DMRTB1Q96MA1 342 aa10.29□□□□□ -0.76
CLIP1-201ENST00000302528 PPM1MQ96MI6 270 aa10.29□□□□□ -0.76
CLIP1-201ENST00000302528 MAGEE1Q9HCI5 957 aa10.29□□□□□ -0.76
CLIP1-201ENST00000302528 C11orf16Q9NQ32 467 aa10.29□□□□□ -0.76
CLIP1-201ENST00000302528 TMX2Q9Y320 296 aa10.29□□□□□ -0.76
CLIP1-201ENST00000302528 GRIN2DO15399 1336 aa10.29□□□□□ -0.76
CLIP1-201ENST00000302528 DDX3XO00571 662 aaKnown RBP eCLIP10.29□□□□□ -0.76
CLIP1-201ENST00000302528 MAFKO60675 156 aa10.29□□□□□ -0.76
CLIP1-201ENST00000302528 KERAO60938 352 aa10.29□□□□□ -0.76
CLIP1-201ENST00000302528 ITGB1P05556 798 aa10.29□□□□□ -0.76
CLIP1-201ENST00000302528 TSHRP16473 764 aa10.29□□□□□ -0.76
CLIP1-201ENST00000302528 KCNJ2P63252 427 aa10.29□□□□□ -0.76
CLIP1-201ENST00000302528 PDK4Q16654 411 aa10.29□□□□□ -0.76
CLIP1-201ENST00000302528 C9orf131Q5VYM1 1079 aa10.29□□□□□ -0.76
CLIP1-201ENST00000302528 ZDHHC20Q5W0Z9 365 aa10.29□□□□□ -0.76
CLIP1-201ENST00000302528 GK5Q6ZS86 529 aa10.29□□□□□ -0.76
CLIP1-201ENST00000302528 RALGPS2Q86X27 583 aaPredicted RBP10.29□□□□□ -0.76
CLIP1-201ENST00000302528 CEP97Q8IW35 865 aa10.29□□□□□ -0.76
CLIP1-201ENST00000302528 FOXRED2Q8IWF2 684 aa10.29□□□□□ -0.76
CLIP1-201ENST00000302528 RTKNQ9BST9 563 aa10.29□□□□□ -0.76
CLIP1-201ENST00000302528 PAK6Q9NQU5 681 aaPredicted RBP10.29□□□□□ -0.76
CLIP1-201ENST00000302528 RNF19AQ9NV58 838 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 81.2 ms