RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 CAND1Q86VP6 1230 aaKnown RBP15.23■□□□□ 0.03
SHH-201ENST00000297261 RAB43Q86YS6 212 aa15.23■□□□□ 0.03
SHH-201ENST00000297261 AQP12AQ8IXF9 295 aa15.23■□□□□ 0.03
SHH-201ENST00000297261 ATAD1Q8NBU5 361 aa15.23■□□□□ 0.03
SHH-201ENST00000297261 POLR1EQ9GZS1 481 aaKnown RBP15.23■□□□□ 0.03
SHH-201ENST00000297261 EXD2Q9NVH0 621 aa15.23■□□□□ 0.03
SHH-201ENST00000297261 GDAP2Q9NXN4 497 aa15.23■□□□□ 0.03
SHH-201ENST00000297261 PIRO00625 290 aa15.23■□□□□ 0.03
SHH-201ENST00000297261 COX7A2P14406 83 aa15.23■□□□□ 0.03
SHH-201ENST00000297261 BTG3Q14201 252 aaPredicted RBP15.23■□□□□ 0.03
SHH-201ENST00000297261 KLHL12Q53G59 568 aa15.23■□□□□ 0.03
SHH-201ENST00000297261 CLEC20AQ6ZU45 233 aa15.23■□□□□ 0.03
SHH-201ENST00000297261 EPHX4Q8IUS5 362 aa15.23■□□□□ 0.03
SHH-201ENST00000297261 ZC3H7AQ8IWR0 971 aaKnown RBP15.23■□□□□ 0.03
SHH-201ENST00000297261 OR10A6Q8NH74 314 aa15.23■□□□□ 0.03
SHH-201ENST00000297261 BTN2A2Q8WVV5 523 aa15.23■□□□□ 0.03
SHH-201ENST00000297261 EXOC2Q96KP1 924 aa15.23■□□□□ 0.03
SHH-201ENST00000297261 MARCH2Q9P0N8 246 aa15.23■□□□□ 0.03
SHH-201ENST00000297261 PADI4Q9UM07 663 aa15.23■□□□□ 0.03
SHH-201ENST00000297261 TNPO3Q9Y5L0 923 aaKnown RBP15.23■□□□□ 0.03
SHH-201ENST00000297261 SAGE2PA6NJ88 616 aa15.22■□□□□ 0.03
SHH-201ENST00000297261 MSI1O43347 362 aaKnown RBP15.22■□□□□ 0.03
SHH-201ENST00000297261 ZNF7P17097 686 aaPredicted RBP15.22■□□□□ 0.03
SHH-201ENST00000297261 PTPN3P26045 913 aa15.22■□□□□ 0.03
SHH-201ENST00000297261 IL18R1Q13478 541 aa15.22■□□□□ 0.03
SHH-201ENST00000297261 SLC22A16Q86VW1 577 aa15.22■□□□□ 0.03
SHH-201ENST00000297261 SLAIN1Q8ND83 568 aa15.22■□□□□ 0.03
SHH-201ENST00000297261 WDR36Q8NI36 951 aaKnown RBP15.22■□□□□ 0.03
SHH-201ENST00000297261 ACBD6Q9BR61 282 aa15.22■□□□□ 0.03
SHH-201ENST00000297261 BPIFA1Q9NP55 256 aa15.22■□□□□ 0.03
SHH-201ENST00000297261 ABCB9Q9NP78 766 aa15.22■□□□□ 0.03
SHH-201ENST00000297261 ARL15Q9NXU5 204 aa15.22■□□□□ 0.03
SHH-201ENST00000297261 SUCOQ9UBS9 1254 aaKnown RBP15.22■□□□□ 0.03
SHH-201ENST00000297261 LSM7Q9UK45 103 aaKnown RBP15.22■□□□□ 0.03
SHH-201ENST00000297261 ERGIC3Q9Y282 383 aa15.22■□□□□ 0.03
SHH-201ENST00000297261 DOCK1Q14185 1865 aa15.22■□□□□ 0.03
SHH-201ENST00000297261 PLOD3O60568 738 aa15.22■□□□□ 0.03
SHH-201ENST00000297261 CDC42P60953 191 aa15.22■□□□□ 0.03
SHH-201ENST00000297261 RHOAP61586 193 aa15.22■□□□□ 0.03
SHH-201ENST00000297261 BOP1Q14137 746 aaKnown RBP15.22■□□□□ 0.03
SHH-201ENST00000297261 GPR180Q86V85 440 aa15.22■□□□□ 0.03
SHH-201ENST00000297261 REM2Q8IYK8 340 aaPredicted RBP15.22■□□□□ 0.03
SHH-201ENST00000297261 PIK3C3Q8NEB9 887 aa15.22■□□□□ 0.03
SHH-201ENST00000297261 DBF4BQ8NFT6 615 aa15.22■□□□□ 0.03
SHH-201ENST00000297261 KAT8Q9H7Z6 458 aaKnown RBP15.22■□□□□ 0.03
SHH-201ENST00000297261 PDP1Q9P0J1 537 aaPredicted RBP15.22■□□□□ 0.03
SHH-201ENST00000297261 ADAM30Q9UKF2 790 aa15.22■□□□□ 0.03
SHH-201ENST00000297261 CARD8Q9Y2G2 431 aa15.22■□□□□ 0.03
SHH-201ENST00000297261 RFXANKO14593 260 aa15.22■□□□□ 0.03
SHH-201ENST00000297261 IL7RP16871 459 aa15.22■□□□□ 0.03
SHH-201ENST00000297261 DAOAP59103 153 aa15.22■□□□□ 0.03
SHH-201ENST00000297261 HERC3Q15034 1050 aa15.22■□□□□ 0.03
SHH-201ENST00000297261 C11orf91Q3C1V1 193 aa15.22■□□□□ 0.03
SHH-201ENST00000297261 DDI2Q5TDH0 399 aa15.22■□□□□ 0.03
SHH-201ENST00000297261 NIPAL1Q6NVV3 410 aa15.22■□□□□ 0.03
SHH-201ENST00000297261 MZT2BQ6NZ67 158 aa15.22■□□□□ 0.03
SHH-201ENST00000297261 KIAA0408Q6ZU52 694 aa15.22■□□□□ 0.03
SHH-201ENST00000297261 SMG8Q8ND04 991 aaKnown RBP15.22■□□□□ 0.03
SHH-201ENST00000297261 PRICKLE1Q96MT3 831 aaPredicted RBP15.22■□□□□ 0.03
SHH-201ENST00000297261 PANX1Q96RD7 426 aa15.22■□□□□ 0.03
SHH-201ENST00000297261 CRISPLD1Q9H336 500 aa15.22■□□□□ 0.03
SHH-201ENST00000297261 FBRSL1Q9HCM7 1045 aaKnown RBP15.22■□□□□ 0.03
SHH-201ENST00000297261 RPS6KA6Q9UK32 745 aa15.22■□□□□ 0.03
SHH-201ENST00000297261 A0A0U1RQF3 1178 aa15.21■□□□□ 0.03
SHH-201ENST00000297261 UBXN8O00124 270 aa15.21■□□□□ 0.03
SHH-201ENST00000297261 ARPC2O15144 300 aa15.21■□□□□ 0.03
SHH-201ENST00000297261 ZBTB14O43829 449 aa15.21■□□□□ 0.03
SHH-201ENST00000297261 ALDOAP04075 364 aaKnown RBP15.21■□□□□ 0.03
SHH-201ENST00000297261 RHOCP08134 193 aa15.21■□□□□ 0.03
SHH-201ENST00000297261 CDK4P11802 303 aa15.21■□□□□ 0.03
SHH-201ENST00000297261 PAX3P23760 479 aa15.21■□□□□ 0.03
SHH-201ENST00000297261 CRATP43155 626 aa15.21■□□□□ 0.03
SHH-201ENST00000297261 PHC1P78364 1004 aa15.21■□□□□ 0.03
SHH-201ENST00000297261 CDH18Q13634 790 aa15.21■□□□□ 0.03
SHH-201ENST00000297261 TRPV3Q8NET8 790 aa15.21■□□□□ 0.03
SHH-201ENST00000297261 TBATAQ96M53 351 aa15.21■□□□□ 0.03
SHH-201ENST00000297261 OXCT2Q9BYC2 517 aaPredicted RBP15.21■□□□□ 0.03
SHH-201ENST00000297261 AGO3Q9H9G7 860 aaKnown RBP15.21■□□□□ 0.03
SHH-201ENST00000297261 KLHL1Q9NR64 748 aa15.21■□□□□ 0.03
SHH-201ENST00000297261 SMPD4Q9NXE4 827 aa15.21■□□□□ 0.03
SHH-201ENST00000297261 EP400Q96L91 3159 aa15.21■□□□□ 0.03
SHH-201ENST00000297261 MBLAC1A4D2B0 266 aaPredicted RBP15.21■□□□□ 0.03
SHH-201ENST00000297261 MEIS3P2A8K0S8 358 aa15.21■□□□□ 0.03
SHH-201ENST00000297261 ZNF99A8MXY4 864 aaPredicted RBP15.21■□□□□ 0.03
SHH-201ENST00000297261 BTN3A3O00478 584 aa15.21■□□□□ 0.03
SHH-201ENST00000297261 SLC22A2O15244 555 aa15.21■□□□□ 0.03
SHH-201ENST00000297261 NPHS1O60500 1241 aa15.21■□□□□ 0.03
SHH-201ENST00000297261 MBL2P11226 248 aaPredicted RBP15.21■□□□□ 0.03
SHH-201ENST00000297261 CNTN1Q12860 1018 aa15.21■□□□□ 0.03
SHH-201ENST00000297261 DAG1Q14118 895 aa15.21■□□□□ 0.03
SHH-201ENST00000297261 CNSTQ6PJW8 725 aa15.21■□□□□ 0.03
SHH-201ENST00000297261 ERMP1Q7Z2K6 904 aa15.21■□□□□ 0.03
SHH-201ENST00000297261 TRPC4Q9UBN4 977 aa15.21■□□□□ 0.03
SHH-201ENST00000297261 VPS28Q9UK41 221 aa15.21■□□□□ 0.03
SHH-201ENST00000297261 ELOVL7A1L3X0 281 aa15.21■□□□□ 0.03
SHH-201ENST00000297261 IFRD1O00458 451 aaPredicted RBP15.21■□□□□ 0.03
SHH-201ENST00000297261 GABBR2O75899 941 aa15.21■□□□□ 0.03
SHH-201ENST00000297261 SIX3O95343 332 aaPredicted RBP15.21■□□□□ 0.03
SHH-201ENST00000297261 IL6P05231 212 aa15.21■□□□□ 0.03
SHH-201ENST00000297261 FMO3P31513 532 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms