RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 SLC7A6OSQ96CW6 309 aaPredicted RBP13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 OSGEPQ9NPF4 335 aa13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 UCKL1Q9NWZ5 548 aa13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 ELOVL7A1L3X0 281 aa13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 FGF19O95750 216 aa13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 ASTE1Q2TB18 679 aaPredicted RBP13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 HHIPL2Q6UWX4 724 aa13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 SCUBE3Q8IX30 993 aa13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 ZFP3Q96NJ6 502 aa13.82□□□□□ -0.2
CCDC88A-201ENST00000263630 OR6C6A6NF89 314 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 MAGP20916 626 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 C16orf59Q7L2K0 433 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 LINGO1Q96FE5 620 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 MFSD14AQ96MC6 490 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 CNOT6Q9ULM6 557 aaKnown RBP13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 MAPK3P27361 379 aaPredicted RBP13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 PNLIPRP1P54315 467 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 MAB21L1Q13394 359 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 BCL2A1Q16548 175 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 PDK4Q16654 411 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 AHSA2Q719I0 299 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 OXR1Q8N573 874 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 NDNQ99608 321 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 TREX2Q9BQ50 279 aaPredicted RBP13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 L2HGDHQ9H9P8 463 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 CCKBRP32239 447 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 UBXN11Q5T124 520 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 PLEKHH3Q7Z736 793 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 RIOX2Q8IUF8 465 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 CPNE9Q8IYJ1 553 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 AGAP11Q8TF27 550 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 TCF25Q9BQ70 676 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 MRPL17Q9NRX2 175 aaKnown RBP13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 SNTG1Q9NSN8 517 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 ARL8BQ9NVJ2 186 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 EGFL7Q9UHF1 273 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 IGSF1Q8N6C5 1336 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 A0A0J9YYE9 177 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 H0YGN5 161 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 POLR2JP52435 117 aaKnown RBP13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 HFE2Q6ZVN8 426 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 UBE2R2Q712K3 238 aaPredicted RBP13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 SLC43A3Q8NBI5 491 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 HJURPQ8NCD3 748 aaPredicted RBP13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 SMARCD2Q92925 531 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 TAMM41Q96BW9 452 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 POLR3BQ9NW08 1133 aaPredicted RBP13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 PCYT1BQ9Y5K3 369 aaPredicted RBP13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 U3KQV3 271 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 CDC42BPBQ9Y5S2 1711 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 EFCAB9A8MZ26 197 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 TRAFD1O14545 582 aaPredicted RBP13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 HRGP04196 525 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 ITGB1P05556 798 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 BRMS1LQ5PSV4 323 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 ISLR2Q6UXK2 745 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 ZYG11AQ6WRX3 759 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 FBXO33Q7Z6M2 555 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 PIGBQ92521 554 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 ZNF570Q96NI8 536 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 PNPLA6Q8IY17 1366 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 SRRM3A6NNA2 597 aaPredicted RBP13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 ABHD2P08910 425 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 KIR3DL1P43629 444 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 MAN2A2P49641 1150 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 RAB5BP61020 215 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 BLMHQ13867 455 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 GNMTQ14749 295 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 MAD2L1BPQ15013 274 aaPredicted RBP13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 SCGB2B2Q4G0G5 96 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 CACUL1Q86Y37 369 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 C12orf43Q96C57 262 aaKnown RBP13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 MFSD3Q96ES6 412 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 SMPD4Q9NXE4 827 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 I3L521 148 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 EML1O00423 815 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 PSMB4P28070 264 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 CCR10P46092 362 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 SELENOVP59797 346 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 CPSF6Q16630 551 aaKnown RBP eCLIP13.81□□□□□ -0.21e-7■■■■■ 28.7
CCDC88A-201ENST00000263630 CEP97Q8IW35 865 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 NSUN4Q96CB9 384 aaKnown RBP13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 RBM18Q96H35 190 aaKnown RBP13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 UROC1Q96N76 676 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 GTPBP2Q9BX10 602 aaKnown RBP13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 UCK2Q9BZX2 261 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 NRKQ7Z2Y5 1582 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 FAM234BA2RU67 622 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 HSPA12AO43301 675 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 NRP2O60462 931 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 ENTPD6O75354 484 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 BCAS1O75363 584 aaPredicted RBP13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 RASGRP1O95267 797 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 SLC6A9P48067 706 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 ACVR2BQ13705 512 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 SCARF1Q14162 830 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 C2orf76Q3KRA6 126 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 CRTC2Q53ET0 693 aaPredicted RBP13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 DAGLBQ8NCG7 672 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 DPAGT1Q9H3H5 408 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 191.2 ms