RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 SH3GLB1Q9Y371 365 aa10.66□□□□□ -0.7
CD44-201ENST00000263398 OR10H1Q9Y4A9 318 aa10.66□□□□□ -0.7
CD44-201ENST00000263398 ARL5CA6NH57 179 aa10.65□□□□□ -0.7
CD44-201ENST00000263398 FAM159BA6NKW6 160 aa10.65□□□□□ -0.7
CD44-201ENST00000263398 PEX10O60683 326 aa10.65□□□□□ -0.7
CD44-201ENST00000263398 HTR1BP28222 390 aa10.65□□□□□ -0.7
CD44-201ENST00000263398 RPL4P36578 427 aaKnown RBP10.65□□□□□ -0.7
CD44-201ENST00000263398 FAM220AQ7Z4H9 259 aa10.65□□□□□ -0.7
CD44-201ENST00000263398 MPP5Q8N3R9 675 aa10.65□□□□□ -0.7
CD44-201ENST00000263398 ATG10Q9H0Y0 220 aa10.65□□□□□ -0.7
CD44-201ENST00000263398 FAM83DQ9H4H8 585 aa10.65□□□□□ -0.7
CD44-201ENST00000263398 INTS10Q9NVR2 710 aaKnown RBP10.65□□□□□ -0.7
CD44-201ENST00000263398 ZNF358Q9NW07 568 aa10.65□□□□□ -0.7
CD44-201ENST00000263398 OXSMQ9NWU1 459 aa10.65□□□□□ -0.7
CD44-201ENST00000263398 HMGXB4Q9UGU5 601 aa10.65□□□□□ -0.7
CD44-201ENST00000263398 ZNF780BQ9Y6R6 833 aa10.65□□□□□ -0.7
CD44-201ENST00000263398 SPEF2Q9C093 1822 aa10.65□□□□□ -0.7
CD44-201ENST00000263398 LOC110117498-PIK3R3F6TDL0 507 aa10.65□□□□□ -0.7
CD44-201ENST00000263398 IRAK2O43187 625 aa10.65□□□□□ -0.7
CD44-201ENST00000263398 UGT2B17O75795 530 aa10.65□□□□□ -0.7
CD44-201ENST00000263398 FABP3P05413 133 aa10.65□□□□□ -0.7
CD44-201ENST00000263398 ANXA4P09525 319 aaPredicted RBP10.65□□□□□ -0.7
CD44-201ENST00000263398 TCF4P15884 667 aa10.65□□□□□ -0.7
CD44-201ENST00000263398 SMPD1P17405 629 aa10.65□□□□□ -0.7
CD44-201ENST00000263398 CDH5P33151 784 aaPredicted RBP10.65□□□□□ -0.7
CD44-201ENST00000263398 LINGO4Q6UY18 593 aa10.65□□□□□ -0.7
CD44-201ENST00000263398 CDH24Q86UP0 819 aa10.65□□□□□ -0.7
CD44-201ENST00000263398 SKA1Q96BD8 255 aa10.65□□□□□ -0.7
CD44-201ENST00000263398 FUBP3Q96I24 572 aaKnown RBP eCLIP10.65□□□□□ -0.7
CD44-201ENST00000263398 COQ10BQ9H8M1 238 aa10.65□□□□□ -0.7
CD44-201ENST00000263398 SEMA3GQ9NS98 782 aa10.65□□□□□ -0.7
CD44-201ENST00000263398 GALNT8Q9NY28 637 aa10.65□□□□□ -0.7
CD44-201ENST00000263398 TBC1D14Q9P2M4 693 aa10.65□□□□□ -0.7
CD44-201ENST00000263398 GULP1Q9UBP9 304 aa10.65□□□□□ -0.7
CD44-201ENST00000263398 EIF2B4Q9UI10 523 aaKnown RBP10.65□□□□□ -0.7
CD44-201ENST00000263398 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP10.65□□□□□ -0.7
CD44-201ENST00000263398 AQP12BA6NM10 295 aa10.65□□□□□ -0.7
CD44-201ENST00000263398 PER2O15055 1255 aa10.65□□□□□ -0.7
CD44-201ENST00000263398 PGRMC2O15173 223 aa10.65□□□□□ -0.7
CD44-201ENST00000263398 IFNA16P05015 189 aa10.65□□□□□ -0.7
CD44-201ENST00000263398 AMD1P17707 334 aa10.65□□□□□ -0.7
CD44-201ENST00000263398 PSMA1P25786 263 aaKnown RBP10.65□□□□□ -0.7
CD44-201ENST00000263398 SLC7A1P30825 629 aa10.65□□□□□ -0.7
CD44-201ENST00000263398 GRIA1P42261 906 aa10.65□□□□□ -0.7
CD44-201ENST00000263398 RPS6KA3P51812 740 aa10.65□□□□□ -0.7
CD44-201ENST00000263398 NRLP54845 237 aa10.65□□□□□ -0.7
CD44-201ENST00000263398 ZNF554Q86TJ5 538 aa10.65□□□□□ -0.7
CD44-201ENST00000263398 AQP12AQ8IXF9 295 aa10.65□□□□□ -0.7
CD44-201ENST00000263398 ZZZ3Q8IYH5 903 aa10.65□□□□□ -0.7
CD44-201ENST00000263398 SVOPLQ8N434 492 aa10.65□□□□□ -0.7
CD44-201ENST00000263398 C1GALT1C1Q96EU7 318 aa10.65□□□□□ -0.7
CD44-201ENST00000263398 COX4I2Q96KJ9 171 aa10.65□□□□□ -0.7
CD44-201ENST00000263398 LMAN2LQ9H0V9 348 aa10.65□□□□□ -0.7
CD44-201ENST00000263398 TRMT13Q9NUP7 481 aaKnown RBP10.65□□□□□ -0.7
CD44-201ENST00000263398 CNTN3Q9P232 1028 aa10.65□□□□□ -0.7
CD44-201ENST00000263398 TRPS1Q9UHF7 1281 aa10.65□□□□□ -0.7
CD44-201ENST00000263398 FKBPLQ9UIM3 349 aa10.65□□□□□ -0.7
CD44-201ENST00000263398 GPSM3Q9Y4H4 160 aa10.65□□□□□ -0.7
CD44-201ENST00000263398 TNFRSF11BO00300 401 aa10.65□□□□□ -0.71
CD44-201ENST00000263398 ADAMDEC1O15204 470 aa10.65□□□□□ -0.71
CD44-201ENST00000263398 H6PDO95479 791 aa10.65□□□□□ -0.71
CD44-201ENST00000263398 HLA-DQA2P01906 255 aa10.65□□□□□ -0.71
CD44-201ENST00000263398 CHRNA4P43681 627 aa10.65□□□□□ -0.71
CD44-201ENST00000263398 LGALS3BPQ08380 585 aa10.65□□□□□ -0.71
CD44-201ENST00000263398 CHIT1Q13231 466 aa10.65□□□□□ -0.71
CD44-201ENST00000263398 KCNJ11Q14654 390 aa10.65□□□□□ -0.71
CD44-201ENST00000263398 C9orf64Q5T6V5 341 aa10.65□□□□□ -0.71
CD44-201ENST00000263398 DDI2Q5TDH0 399 aa10.65□□□□□ -0.71
CD44-201ENST00000263398 OR10A6Q8NH74 314 aa10.65□□□□□ -0.71
CD44-201ENST00000263398 TWNKQ96RR1 684 aa10.65□□□□□ -0.71
CD44-201ENST00000263398 TFB2MQ9H5Q4 396 aaKnown RBP10.65□□□□□ -0.71
CD44-201ENST00000263398 TEX264Q9Y6I9 313 aa10.65□□□□□ -0.71
CD44-201ENST00000263398 STON1Q9Y6Q2 735 aa10.65□□□□□ -0.71
CD44-201ENST00000263398 SNED1Q8TER0 1413 aa10.64□□□□□ -0.71
CD44-201ENST00000263398 CCDC162PA2VCL2 907 aa10.64□□□□□ -0.71
CD44-201ENST00000263398 IFNW1P05000 195 aa10.64□□□□□ -0.71
CD44-201ENST00000263398 CFHP08603 1231 aa10.64□□□□□ -0.71
CD44-201ENST00000263398 COL6A1P12109 1028 aa10.64□□□□□ -0.71
CD44-201ENST00000263398 C2orf80Q0P641 193 aa10.64□□□□□ -0.71
CD44-201ENST00000263398 CBX2Q14781 532 aaPredicted RBP10.64□□□□□ -0.71
CD44-201ENST00000263398 SLC9B1Q4ZJI4 515 aa10.64□□□□□ -0.71
CD44-201ENST00000263398 FUT10Q6P4F1 479 aa10.64□□□□□ -0.71
CD44-201ENST00000263398 PLET1Q6UQ28 207 aa10.64□□□□□ -0.71
CD44-201ENST00000263398 RNF44Q7L0R7 432 aa10.64□□□□□ -0.71
CD44-201ENST00000263398 SERPINA9Q86WD7 417 aa10.64□□□□□ -0.71
CD44-201ENST00000263398 TMEM192Q8IY95 271 aa10.64□□□□□ -0.71
CD44-201ENST00000263398 TMEM199Q8N511 208 aa10.64□□□□□ -0.71
CD44-201ENST00000263398 LRRC17Q8N6Y2 441 aa10.64□□□□□ -0.71
CD44-201ENST00000263398 PIK3C3Q8NEB9 887 aa10.64□□□□□ -0.71
CD44-201ENST00000263398 XAGE5Q8WWM1 108 aa10.64□□□□□ -0.71
CD44-201ENST00000263398 SLC13A3Q8WWT9 602 aa10.64□□□□□ -0.71
CD44-201ENST00000263398 PPP1R14AQ96A00 147 aa10.64□□□□□ -0.71
CD44-201ENST00000263398 RERGQ96A58 199 aaPredicted RBP10.64□□□□□ -0.71
CD44-201ENST00000263398 ERLEC1Q96DZ1 483 aa10.64□□□□□ -0.71
CD44-201ENST00000263398 FEM1CQ96JP0 617 aa10.64□□□□□ -0.71
CD44-201ENST00000263398 RACGAP1Q9H0H5 632 aa10.64□□□□□ -0.71
CD44-201ENST00000263398 INTS7Q9NVH2 962 aaKnown RBP10.64□□□□□ -0.71
CD44-201ENST00000263398 C1orf109Q9NX04 203 aa10.64□□□□□ -0.71
CD44-201ENST00000263398 GTF2IRD1Q9UHL9 959 aa10.64□□□□□ -0.71
CD44-201ENST00000263398 PDE10AQ9Y233 779 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms