RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 PAPSS2O95340 614 aaPredicted RBP12.52□□□□□ -0.41
LIG1-201ENST00000263274 TRIM16O95361 564 aa12.52□□□□□ -0.41
LIG1-201ENST00000263274 GPIP06744 558 aa12.52□□□□□ -0.41
LIG1-201ENST00000263274 UGT1A1P22309 533 aa12.52□□□□□ -0.41
LIG1-201ENST00000263274 UGT1A4P22310 534 aa12.52□□□□□ -0.41
LIG1-201ENST00000263274 MYF6P23409 242 aa12.52□□□□□ -0.41
LIG1-201ENST00000263274 UGT1A3P35503 534 aa12.52□□□□□ -0.41
LIG1-201ENST00000263274 UGT1A5P35504 534 aa12.52□□□□□ -0.41
LIG1-201ENST00000263274 OXCT1P55809 520 aa12.52□□□□□ -0.41
LIG1-201ENST00000263274 RPL38P63173 70 aaKnown RBP12.52□□□□□ -0.41
LIG1-201ENST00000263274 CTBSQ01459 385 aa12.52□□□□□ -0.41
LIG1-201ENST00000263274 CREB5Q02930 508 aa12.52□□□□□ -0.41
LIG1-201ENST00000263274 TNK2Q07912 1038 aa12.52□□□□□ -0.41
LIG1-201ENST00000263274 GALNT1Q10472 559 aaPredicted RBP12.52□□□□□ -0.41
LIG1-201ENST00000263274 ZC3H7AQ8IWR0 971 aaKnown RBP12.52□□□□□ -0.41
LIG1-201ENST00000263274 C2orf69Q8N8R5 385 aa12.52□□□□□ -0.41
LIG1-201ENST00000263274 CDC26Q8NHZ8 85 aa12.52□□□□□ -0.41
LIG1-201ENST00000263274 SGCDQ92629 289 aa12.52□□□□□ -0.41
LIG1-201ENST00000263274 GFM2Q969S9 779 aaKnown RBP12.52□□□□□ -0.41
LIG1-201ENST00000263274 FAM162AQ96A26 154 aa12.52□□□□□ -0.41
LIG1-201ENST00000263274 FBXO44Q9H4M3 255 aa12.52□□□□□ -0.41
LIG1-201ENST00000263274 TFB2MQ9H5Q4 396 aaKnown RBP12.52□□□□□ -0.41
LIG1-201ENST00000263274 MROH6A6NGR9 719 aa12.51□□□□□ -0.41
LIG1-201ENST00000263274 KERAO60938 352 aa12.51□□□□□ -0.41
LIG1-201ENST00000263274 DEAF1O75398 565 aaPredicted RBP12.51□□□□□ -0.41
LIG1-201ENST00000263274 BCL10O95999 233 aa12.51□□□□□ -0.41
LIG1-201ENST00000263274 S100BP04271 92 aaPredicted RBP12.51□□□□□ -0.41
LIG1-201ENST00000263274 G6PDP11413 515 aa12.51□□□□□ -0.41
LIG1-201ENST00000263274 HSD17B1P14061 328 aa12.51□□□□□ -0.41
LIG1-201ENST00000263274 CTPS1P17812 591 aa12.51□□□□□ -0.41
LIG1-201ENST00000263274 MTHFRP42898 656 aa12.51□□□□□ -0.41
LIG1-201ENST00000263274 KANK2Q63ZY3 851 aa12.51□□□□□ -0.41
LIG1-201ENST00000263274 LCN8Q6JVE9 175 aa12.51□□□□□ -0.41
LIG1-201ENST00000263274 PSAPL1Q6NUJ1 521 aa12.51□□□□□ -0.41
LIG1-201ENST00000263274 HACD2Q6Y1H2 254 aa12.51□□□□□ -0.41
LIG1-201ENST00000263274 CCDC80Q76M96 950 aa12.51□□□□□ -0.41
LIG1-201ENST00000263274 OR6K2Q8NGY2 324 aa12.51□□□□□ -0.41
LIG1-201ENST00000263274 OR10A6Q8NH74 314 aa12.51□□□□□ -0.41
LIG1-201ENST00000263274 OSCP1Q8WVF1 389 aa12.51□□□□□ -0.41
LIG1-201ENST00000263274 C17orf50Q8WW18 174 aa12.51□□□□□ -0.41
LIG1-201ENST00000263274 TMBIM1Q969X1 311 aa12.51□□□□□ -0.41
LIG1-201ENST00000263274 NRBF2Q96F24 287 aa12.51□□□□□ -0.41
LIG1-201ENST00000263274 GPATCH1Q9BRR8 931 aaKnown RBP12.51□□□□□ -0.41
LIG1-201ENST00000263274 HIPK3Q9H422 1215 aa12.51□□□□□ -0.41
LIG1-201ENST00000263274 ARMC7Q9H6L4 198 aa12.51□□□□□ -0.41
LIG1-201ENST00000263274 SCUBE2Q9NQ36 999 aa12.51□□□□□ -0.41
LIG1-201ENST00000263274 GPR45Q9Y5Y3 372 aa12.51□□□□□ -0.41
LIG1-201ENST00000263274 OAS3Q9Y6K5 1087 aaKnown RBP12.51□□□□□ -0.41
LIG1-201ENST00000263274 H3BMQ9 156 aa12.51□□□□□ -0.41
LIG1-201ENST00000263274 DLGAP1O14490 977 aa12.51□□□□□ -0.41
LIG1-201ENST00000263274 TOR1BO14657 336 aa12.51□□□□□ -0.41
LIG1-201ENST00000263274 TNFRSF10BO14763 440 aa12.51□□□□□ -0.41
LIG1-201ENST00000263274 HS6ST1O60243 411 aa12.51□□□□□ -0.41
LIG1-201ENST00000263274 NDST3O95803 873 aa12.51□□□□□ -0.41
LIG1-201ENST00000263274 NAT2P11245 290 aa12.51□□□□□ -0.41
LIG1-201ENST00000263274 HOXD12P35452 270 aa12.51□□□□□ -0.41
LIG1-201ENST00000263274 GDF5P43026 501 aa12.51□□□□□ -0.41
LIG1-201ENST00000263274 RGRP47804 291 aa12.51□□□□□ -0.41
LIG1-201ENST00000263274 PSMD8P48556 350 aa12.51□□□□□ -0.41
LIG1-201ENST00000263274 SELPLGQ14242 412 aa12.51□□□□□ -0.41
LIG1-201ENST00000263274 ATP6AP1Q15904 470 aa12.51□□□□□ -0.41
LIG1-201ENST00000263274 AP5B1Q2VPB7 878 aa12.51□□□□□ -0.41
LIG1-201ENST00000263274 SLC36A3Q495N2 470 aa12.51□□□□□ -0.41
LIG1-201ENST00000263274 C6orf136Q5SQH8 315 aa12.51□□□□□ -0.41
LIG1-201ENST00000263274 INTS11Q5TA45 600 aaKnown RBP12.51□□□□□ -0.41
LIG1-201ENST00000263274 ZDHHC13Q8IUH4 622 aa12.51□□□□□ -0.41
LIG1-201ENST00000263274 PIANPQ8IYJ0 282 aa12.51□□□□□ -0.41
LIG1-201ENST00000263274 SMYD1Q8NB12 490 aa12.51□□□□□ -0.41
LIG1-201ENST00000263274 ZNF784Q8NCA9 323 aaPredicted RBP12.51□□□□□ -0.41
LIG1-201ENST00000263274 FNDC8Q8TC99 324 aa12.51□□□□□ -0.41
LIG1-201ENST00000263274 KIAA1191Q96A73 305 aa12.51□□□□□ -0.41
LIG1-201ENST00000263274 COG8Q96MW5 612 aa12.51□□□□□ -0.41
LIG1-201ENST00000263274 ATP13A1Q9HD20 1204 aa12.51□□□□□ -0.41
LIG1-201ENST00000263274 SELENONQ9NZV5 590 aa12.51□□□□□ -0.41
LIG1-201ENST00000263274 PCDHB5Q9Y5E4 795 aa12.51□□□□□ -0.41
LIG1-201ENST00000263274 GOLGA4Q13439 2230 aaKnown RBP12.51□□□□□ -0.41
LIG1-201ENST00000263274 TLR5O60602 858 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 RASAL1O95294 804 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 GSNP06396 782 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 OCM2P0CE71 109 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 OCMP0CE72 109 aaPredicted RBP12.5□□□□□ -0.41
LIG1-201ENST00000263274 AKR1A1P14550 325 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 PKMP14618 531 aaKnown RBP12.5□□□□□ -0.41
LIG1-201ENST00000263274 TMED10P49755 219 aaKnown RBP12.5□□□□□ -0.41
LIG1-201ENST00000263274 ATP4BP51164 291 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 SEMG2Q02383 582 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 IL10RBQ08334 325 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 SERINC3Q13530 473 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 USP41Q3LFD5 358 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 FAM98BQ52LJ0 330 aaKnown RBP12.5□□□□□ -0.41
LIG1-201ENST00000263274 PYCR3Q53H96 274 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 ANKRD34AQ69YU3 496 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 PTRHD1Q6GMV3 140 aaKnown RBP12.5□□□□□ -0.41
LIG1-201ENST00000263274 TMEM53Q6P2H8 277 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 CCDC81Q6ZN84 652 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 LYSMD3Q7Z3D4 306 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 CCDC117Q8IWD4 279 aaPredicted RBP12.5□□□□□ -0.41
LIG1-201ENST00000263274 OR2T11Q8NH01 316 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 FUBP1Q96AE4 644 aaKnown RBP12.5□□□□□ -0.41
LIG1-201ENST00000263274 INIPQ9NRY2 104 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms