RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 IL1RL2Q9HB29 575 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 ATP13A1Q9HD20 1204 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 SIRPGQ9P1W8 387 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 TMEM181Q9P2C4 612 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 NDRG3Q9UGV2 375 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 PHF11Q9UIL8 331 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 C3orf18Q9UK00 162 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 QRICH2Q9H0J4 1663 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 NEURL1BA8MQ27 555 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 KBTBD13C9JR72 458 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 M0R233 179 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 RGS10O43665 173 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 AKAP8O43823 692 aaKnown RBP5.7□□□□□ -1.5
SCN1A-216ENST00000637968 TADA2AO75478 443 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 RASAL1O95294 804 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 GPIP06744 558 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 TSPAN19P0C672 248 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 CRHR1P34998 444 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 MAGEA2P43356 314 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 ALDH9A1P49189 494 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 PPM1FP49593 454 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-216ENST00000637968 AFF1P51825 1210 aaKnown RBP5.7□□□□□ -1.5
SCN1A-216ENST00000637968 TBX4P57082 545 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 NCS1P62166 190 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 MS4A2Q01362 244 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 CACNB1Q02641 598 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-216ENST00000637968 PDK2Q15119 407 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 LTB4RQ15722 352 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 HADHQ16836 314 aaKnown RBP5.7□□□□□ -1.5
SCN1A-216ENST00000637968 FNBP1LQ5T0N5 605 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 DARS2Q6PI48 645 aaKnown RBP5.7□□□□□ -1.5
SCN1A-216ENST00000637968 RIOX2Q8IUF8 465 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 SLFN12Q8IYM2 578 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 PARP16Q8N5Y8 322 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 IL17REQ8NFR9 667 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 KAT5Q92993 513 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 RAB7BQ96AH8 199 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 CRELD1Q96HD1 420 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 AHCYL2Q96HN2 611 aaKnown RBP5.7□□□□□ -1.5
SCN1A-216ENST00000637968 RADILQ96JH8 1075 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 ZNF512BQ96KM6 892 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-216ENST00000637968 GSDMCQ9BYG8 508 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 CATSPERBQ9H7T0 1116 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 RNF121Q9H920 327 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 INTS10Q9NVR2 710 aaKnown RBP5.7□□□□□ -1.5
SCN1A-216ENST00000637968 TJP2Q9UDY2 1190 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 SSR3Q9UNL2 185 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 POLR3HQ9Y535 204 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-216ENST00000637968 PCDHB3Q9Y5E6 796 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 PCDHGB2Q9Y5G2 931 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 IGSF9BQ9UPX0 1349 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 IFT172Q9UG01 1749 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 hCG_1807616A0A1W2PRN6 198 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 AQP12BA6NM10 295 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 MYL12BO14950 172 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 ADAM12O43184 909 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 NDUFS6O75380 124 aaKnown RBP5.69□□□□□ -1.5
SCN1A-216ENST00000637968 INMTO95050 263 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 ANGPTL1O95841 491 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 PCCAP05165 728 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-216ENST00000637968 ADORA3P0DMS8 318 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 MYL12AP19105 171 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 HTR1BP28222 390 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 EPHX2P34913 555 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 BRCC3P46736 316 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 CASP4P49662 377 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 SULT1E1P49888 294 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 MGAT3Q09327 533 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 CDH17Q12864 832 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 ILF3Q12906 894 aaKnown RBP eCLIP5.69□□□□□ -1.5
SCN1A-216ENST00000637968 TRIP4Q15650 581 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-216ENST00000637968 BAK1Q16611 211 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 WSCD2Q2TBF2 565 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 FAM171BQ6P995 826 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 USP45Q70EL2 814 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 FAM160B2Q86V87 743 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 AQP12AQ8IXF9 295 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 NAT16Q8N8M0 369 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 FBXL13Q8NEE6 735 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 ZNF680Q8NEM1 530 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 CMASQ8NFW8 434 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-216ENST00000637968 SHKBP1Q8TBC3 707 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 DCAKDQ8WVC6 231 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 TCTEX1D2Q8WW35 142 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 BSNDQ8WZ55 320 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 PIGBQ92521 554 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 Q96MT0 163 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 RNF145Q96MT1 663 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 MUS81Q96NY9 551 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 APBA2Q99767 749 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 TREX2Q9BQ50 279 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-216ENST00000637968 TMEM117Q9H0C3 514 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 TBC1D22BQ9NU19 505 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 SIRT5Q9NXA8 310 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 HCN3Q9P1Z3 774 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 LIPT1Q9Y234 373 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 FKBP7Q9Y680 259 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 KIAA1210Q9ULL0 1709 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 C17orf113A0A1B0GUU1 675 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 CIB4A0PJX0 185 aa5.69□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms