RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 HSFX1Q9UBD0 423 aa10.52□□□□□ -0.73
CUX1-221ENST00000622516 TXNDC9O14530 226 aa10.51□□□□□ -0.73
CUX1-221ENST00000622516 GAPDHSO14556 408 aaPredicted RBP10.51□□□□□ -0.73
CUX1-221ENST00000622516 SMNDC1O75940 238 aaKnown RBP eCLIP10.51□□□□□ -0.731e-5■■□□□ 11.9
CUX1-221ENST00000622516 OR4F21O95013 312 aa10.51□□□□□ -0.73
CUX1-221ENST00000622516 OLFM2O95897 454 aa10.51□□□□□ -0.73
CUX1-221ENST00000622516 HSPA1AP0DMV8 641 aaKnown RBP10.51□□□□□ -0.73
CUX1-221ENST00000622516 HSPA1BP0DMV9 641 aaKnown RBP10.51□□□□□ -0.73
CUX1-221ENST00000622516 GPX3P22352 226 aa10.51□□□□□ -0.73
CUX1-221ENST00000622516 WEE1P30291 646 aa10.51□□□□□ -0.73
CUX1-221ENST00000622516 ADSLP30566 484 aaPredicted RBP10.51□□□□□ -0.73
CUX1-221ENST00000622516 CASP2P42575 452 aa10.51□□□□□ -0.73
CUX1-221ENST00000622516 PIK3CGP48736 1102 aa10.51□□□□□ -0.73
CUX1-221ENST00000622516 STX1BP61266 288 aa10.51□□□□□ -0.73
CUX1-221ENST00000622516 ATP6V0D1P61421 351 aa10.51□□□□□ -0.73
CUX1-221ENST00000622516 STX5Q13190 355 aa10.51□□□□□ -0.73
CUX1-221ENST00000622516 RPS6KA2Q15349 733 aa10.51□□□□□ -0.73
CUX1-221ENST00000622516 TGFBIQ15582 683 aa10.51□□□□□ -0.73
CUX1-221ENST00000622516 AAK1Q2M2I8 961 aa10.51□□□□□ -0.73
CUX1-221ENST00000622516 PLEKHG6Q3KR16 790 aa10.51□□□□□ -0.73
CUX1-221ENST00000622516 ZNF697Q5TEC3 545 aa10.51□□□□□ -0.73
CUX1-221ENST00000622516 KANK2Q63ZY3 851 aa10.51□□□□□ -0.73
CUX1-221ENST00000622516 TMC8Q8IU68 726 aa10.51□□□□□ -0.73
CUX1-221ENST00000622516 LILRA2Q8N149 483 aa10.51□□□□□ -0.73
CUX1-221ENST00000622516 NKAPQ8N5F7 415 aaKnown RBP10.51□□□□□ -0.73
CUX1-221ENST00000622516 JADE3Q92613 823 aa10.51□□□□□ -0.73
CUX1-221ENST00000622516 ATP6V1E2Q96A05 226 aa10.51□□□□□ -0.73
CUX1-221ENST00000622516 VPS33AQ96AX1 596 aa10.51□□□□□ -0.73
CUX1-221ENST00000622516 GCNAQ96QF7 691 aa10.51□□□□□ -0.73
CUX1-221ENST00000622516 BEGAINQ9BUH8 593 aa10.51□□□□□ -0.73
CUX1-221ENST00000622516 SEMA6AQ9H2E6 1030 aa10.51□□□□□ -0.73
CUX1-221ENST00000622516 DNMT3BQ9UBC3 853 aaKnown RBP10.51□□□□□ -0.73
CUX1-221ENST00000622516 HCFC2Q9Y5Z7 792 aa10.51□□□□□ -0.73
CUX1-221ENST00000622516 GBF1Q92538 1859 aa10.51□□□□□ -0.73
CUX1-221ENST00000622516 NPIPB15A6NHN6 443 aaPredicted RBP10.51□□□□□ -0.73
CUX1-221ENST00000622516 GFRA2O00451 464 aa10.51□□□□□ -0.73
CUX1-221ENST00000622516 PRMT5O14744 637 aaPredicted RBP10.51□□□□□ -0.73
CUX1-221ENST00000622516 SLC22A2O15244 555 aa10.51□□□□□ -0.73
CUX1-221ENST00000622516 LILRB3O75022 631 aa10.51□□□□□ -0.73
CUX1-221ENST00000622516 TRBC1P01850 177 aa10.51□□□□□ -0.73
CUX1-221ENST00000622516 BPIP17213 487 aa10.51□□□□□ -0.73
CUX1-221ENST00000622516 SLC7A2P52569 658 aa10.51□□□□□ -0.73
CUX1-221ENST00000622516 CACNG1Q06432 222 aa10.51□□□□□ -0.73
CUX1-221ENST00000622516 HERC3Q15034 1050 aa10.51□□□□□ -0.73
CUX1-221ENST00000622516 CHRNA6Q15825 494 aa10.51□□□□□ -0.73
CUX1-221ENST00000622516 AP1ARQ63HQ0 302 aa10.51□□□□□ -0.73
CUX1-221ENST00000622516 ADGRG2Q8IZP9 1017 aa10.51□□□□□ -0.73
CUX1-221ENST00000622516 SDR16C5Q8N3Y7 309 aa10.51□□□□□ -0.73
CUX1-221ENST00000622516 NAT16Q8N8M0 369 aa10.51□□□□□ -0.73
CUX1-221ENST00000622516 KREMEN2Q8NCW0 462 aa10.51□□□□□ -0.73
CUX1-221ENST00000622516 FAM110BQ8TC76 370 aa10.51□□□□□ -0.73
CUX1-221ENST00000622516 LRRC3Q9BY71 257 aa10.51□□□□□ -0.73
CUX1-221ENST00000622516 KLHL4Q9C0H6 718 aa10.51□□□□□ -0.73
CUX1-221ENST00000622516 LINC00597Q9H2U6 94 aa10.51□□□□□ -0.73
CUX1-221ENST00000622516 NSUN3Q9H649 340 aaKnown RBP10.51□□□□□ -0.73
CUX1-221ENST00000622516 NOL11Q9H8H0 719 aaKnown RBP10.51□□□□□ -0.73
CUX1-221ENST00000622516 CXXC1Q9P0U4 656 aaPredicted RBP10.51□□□□□ -0.73
CUX1-221ENST00000622516 CD84Q9UIB8 345 aa10.51□□□□□ -0.73
CUX1-221ENST00000622516 ZMYM5Q9UJ78 669 aa10.51□□□□□ -0.73
CUX1-221ENST00000622516 PCTPQ9UKL6 214 aa10.51□□□□□ -0.73
CUX1-221ENST00000622516 PLXNA4Q9HCM2 1894 aa10.51□□□□□ -0.73
CUX1-221ENST00000622516 MYO15AQ9UKN7 3530 aa10.51□□□□□ -0.73
CUX1-221ENST00000622516 NEDD8-MDP1E9PL57 170 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 MAP3K13O43283 966 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 SLC25A14O95258 325 aaPredicted RBP10.5□□□□□ -0.73
CUX1-221ENST00000622516 FGF4P08620 206 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 HOXB8P17481 243 aaPredicted RBP10.5□□□□□ -0.73
CUX1-221ENST00000622516 CAPN3P20807 821 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 PTGER3P43115 390 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 POM121L1PQ3SYA9 428 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 PLPP4Q5VZY2 271 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 ASTLQ6HA08 431 aaPredicted RBP10.5□□□□□ -0.73
CUX1-221ENST00000622516 MBOAT1Q6ZNC8 495 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 FRA10AC1Q70Z53 315 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 PDSS2Q86YH6 399 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 PHYKPLQ8IUZ5 450 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 OR2T11Q8NH01 316 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 KCNJ9Q92806 393 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 SPDL1Q96EA4 605 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 CLPBQ9H078 707 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 ZBP1Q9H171 429 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 P2RY12Q9H244 342 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 RETREG1Q9H6L5 497 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 MAGEE1Q9HCI5 957 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 MBD1Q9UIS9 605 aaPredicted RBP10.5□□□□□ -0.73
CUX1-221ENST00000622516 KRT87PA6NCN2 255 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 SYCE1LA8MT33 242 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 E2F3O00716 465 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 ACOT8O14734 319 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 RNASEH1O60930 286 aaKnown RBP10.5□□□□□ -0.73
CUX1-221ENST00000622516 SNUPNO95149 360 aaKnown RBP10.5□□□□□ -0.73
CUX1-221ENST00000622516 TIMP1P01033 207 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 PENKP01210 267 aaPredicted RBP10.5□□□□□ -0.73
CUX1-221ENST00000622516 NTHL1P78549 312 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 PLIN5Q00G26 463 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 NFATC2Q13469 925 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 CBX2Q14781 532 aaPredicted RBP10.5□□□□□ -0.73
CUX1-221ENST00000622516 IL23RQ5VWK5 629 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 PQLC1Q8N2U9 271 aa10.5□□□□□ -0.73
CUX1-221ENST00000622516 GALNT4Q8N4A0 578 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms