RNA–Protein interactions for RNA: ENST00000621897.1

BRCA1-229, Transcript of BRCA1, DNA repair associated, human

TSL 5

Gene BRCA1, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRCA1-229	ENST00000621897	HM13	Q8TCT9	377 aa		4.1	□□□□□ -1.75
BRCA1-229	ENST00000621897	DNAAF4	Q8WXU2	420 aa		4.1	□□□□□ -1.75
BRCA1-229	ENST00000621897	TM9SF4	Q92544	642 aa		4.1	□□□□□ -1.75
BRCA1-229	ENST00000621897	TAF15	Q92804	592 aa	Known RBP eCLIP	4.1	□□□□□ -1.75
BRCA1-229	ENST00000621897	FAM149B1	Q96BN6	582 aa		4.1	□□□□□ -1.75
BRCA1-229	ENST00000621897	LGALS12	Q96DT0	336 aa		4.1	□□□□□ -1.75
BRCA1-229	ENST00000621897	FSD1	Q9BTV5	496 aa		4.1	□□□□□ -1.75
BRCA1-229	ENST00000621897	TRPC7	Q9HCX4	862 aa		4.1	□□□□□ -1.75
BRCA1-229	ENST00000621897	KAT6B	Q8WYB5	2073 aa		4.1	□□□□□ -1.75
BRCA1-229	ENST00000621897	PRAG1	Q86YV5	1406 aa		4.1	□□□□□ -1.75
BRCA1-229	ENST00000621897	EIF4E1B	A6NMX2	242 aa	Known RBP	4.09	□□□□□ -1.75
BRCA1-229	ENST00000621897	TIMM44	O43615	452 aa		4.09	□□□□□ -1.75
BRCA1-229	ENST00000621897	ZNF883	P0CG24	379 aa		4.09	□□□□□ -1.75
BRCA1-229	ENST00000621897	VEGFC	P49767	419 aa		4.09	□□□□□ -1.75
BRCA1-229	ENST00000621897	MBTD1	Q05BQ5	628 aa		4.09	□□□□□ -1.75
BRCA1-229	ENST00000621897	PPIG	Q13427	754 aa	Known RBP eCLIP	4.09	□□□□□ -1.75
BRCA1-229	ENST00000621897	ACVR2B	Q13705	512 aa		4.09	□□□□□ -1.75
BRCA1-229	ENST00000621897	RAB6C	Q53S08	254 aa		4.09	□□□□□ -1.75
BRCA1-229	ENST00000621897	TECRL	Q5HYJ1	363 aa		4.09	□□□□□ -1.75
BRCA1-229	ENST00000621897	APLF	Q8IW19	511 aa	Predicted RBP	4.09	□□□□□ -1.75
BRCA1-229	ENST00000621897	RASGEF1C	Q8N431	466 aa		4.09	□□□□□ -1.75
BRCA1-229	ENST00000621897	PAF1	Q8N7H5	531 aa		4.09	□□□□□ -1.75
BRCA1-229	ENST00000621897	PDILT	Q8N807	584 aa		4.09	□□□□□ -1.75
BRCA1-229	ENST00000621897	C1orf131	Q8NDD1	294 aa	Known RBP	4.09	□□□□□ -1.75
BRCA1-229	ENST00000621897	IL17RE	Q8NFR9	667 aa		4.09	□□□□□ -1.75
BRCA1-229	ENST00000621897	OXNAD1	Q96HP4	312 aa	Predicted RBP	4.09	□□□□□ -1.75
BRCA1-229	ENST00000621897	TBATA	Q96M53	351 aa		4.09	□□□□□ -1.75
BRCA1-229	ENST00000621897	RAB6C	Q9H0N0	254 aa		4.09	□□□□□ -1.75
BRCA1-229	ENST00000621897	ZHX3	Q9H4I2	956 aa		4.09	□□□□□ -1.75
BRCA1-229	ENST00000621897	PDZD7	Q9H5P4	517 aa		4.09	□□□□□ -1.75
BRCA1-229	ENST00000621897	MAGIX	Q9H6Y5	334 aa		4.09	□□□□□ -1.75
BRCA1-229	ENST00000621897	JMJD4	Q9H9V9	463 aa		4.09	□□□□□ -1.75
BRCA1-229	ENST00000621897	SLC52A3	Q9NQ40	469 aa		4.09	□□□□□ -1.75
BRCA1-229	ENST00000621897	MTMR10	Q9NXD2	777 aa		4.09	□□□□□ -1.75
BRCA1-229	ENST00000621897	FAM237B	A0A1B0GVD1	139 aa		4.08	□□□□□ -1.76
BRCA1-229	ENST00000621897		H3BQ06	376 aa	Predicted RBP	4.08	□□□□□ -1.76
BRCA1-229	ENST00000621897	SLC25A12	O75746	678 aa		4.08	□□□□□ -1.76
BRCA1-229	ENST00000621897	IPO7	O95373	1038 aa	Known RBP	4.08	□□□□□ -1.76
BRCA1-229	ENST00000621897	ZNF23	P17027	643 aa		4.08	□□□□□ -1.76
BRCA1-229	ENST00000621897	PRCP	P42785	496 aa		4.08	□□□□□ -1.76
BRCA1-229	ENST00000621897	CCR9	P51686	369 aa		4.08	□□□□□ -1.76
BRCA1-229	ENST00000621897	MRPS34	P82930	218 aa	Known RBP	4.08	□□□□□ -1.76
BRCA1-229	ENST00000621897	TST	Q16762	297 aa	Known RBP	4.08	□□□□□ -1.76
BRCA1-229	ENST00000621897	C15orf39	Q6ZRI6	1047 aa		4.08	□□□□□ -1.76
BRCA1-229	ENST00000621897	NOTCH2NL	Q7Z3S9	236 aa		4.08	□□□□□ -1.76
BRCA1-229	ENST00000621897	TRPT1	Q86TN4	253 aa	Known RBP	4.08	□□□□□ -1.76
BRCA1-229	ENST00000621897	DIS3L2	Q8IYB7	885 aa	Known RBP	4.08	□□□□□ -1.76
BRCA1-229	ENST00000621897	PM20D2	Q8IYS1	436 aa		4.08	□□□□□ -1.76
BRCA1-229	ENST00000621897	GBGT1	Q8N5D6	347 aa		4.08	□□□□□ -1.76
BRCA1-229	ENST00000621897	TRIM58	Q8NG06	486 aa		4.08	□□□□□ -1.76
BRCA1-229	ENST00000621897	SENP5	Q96HI0	755 aa	Predicted RBP	4.08	□□□□□ -1.76
BRCA1-229	ENST00000621897	BARHL1	Q9BZE3	327 aa		4.08	□□□□□ -1.76
BRCA1-229	ENST00000621897	SIL1	Q9H173	461 aa		4.08	□□□□□ -1.76
BRCA1-229	ENST00000621897	CWC15	Q9P013	229 aa	Known RBP	4.08	□□□□□ -1.76
BRCA1-229	ENST00000621897	GTF2A1L	Q9UNN4	478 aa		4.08	□□□□□ -1.76
BRCA1-229	ENST00000621897	R3HDM2	Q9Y2K5	976 aa	Known RBP	4.08	□□□□□ -1.76
BRCA1-229	ENST00000621897	ARHGEF40	Q8TER5	1519 aa		4.07	□□□□□ -1.76
BRCA1-229	ENST00000621897		A0A0G2JNG1	304 aa		4.07	□□□□□ -1.76
BRCA1-229	ENST00000621897		A0A1W2PPI3	338 aa		4.07	□□□□□ -1.76
BRCA1-229	ENST00000621897	NPHP1	O15259	732 aa		4.07	□□□□□ -1.76
BRCA1-229	ENST00000621897	PLPP2	O43688	288 aa		4.07	□□□□□ -1.76
BRCA1-229	ENST00000621897	SYNCRIP	O60506	623 aa	Known RBP	4.07	□□□□□ -1.76
BRCA1-229	ENST00000621897	PDE9A	O76083	593 aa		4.07	□□□□□ -1.76
BRCA1-229	ENST00000621897	TSHB	P01222	138 aa		4.07	□□□□□ -1.76
BRCA1-229	ENST00000621897	CLEC3B	P05452	202 aa		4.07	□□□□□ -1.76
BRCA1-229	ENST00000621897	CD48	P09326	243 aa		4.07	□□□□□ -1.76
BRCA1-229	ENST00000621897	ERVK-10	P10266	1014 aa		4.07	□□□□□ -1.76
BRCA1-229	ENST00000621897	VDR	P11473	427 aa		4.07	□□□□□ -1.76
BRCA1-229	ENST00000621897	NR2F2	P24468	414 aa		4.07	□□□□□ -1.76
BRCA1-229	ENST00000621897	BSG	P35613	385 aa		4.07	□□□□□ -1.76
BRCA1-229	ENST00000621897	TAS2R40	P59535	323 aa		4.07	□□□□□ -1.76
BRCA1-229	ENST00000621897	GNB1	P62873	340 aa		4.07	□□□□□ -1.76
BRCA1-229	ENST00000621897	KCTD2	Q14681	263 aa		4.07	□□□□□ -1.76
BRCA1-229	ENST00000621897	KIR2DS3	Q14952	304 aa		4.07	□□□□□ -1.76
BRCA1-229	ENST00000621897	KIR2DS5	Q14953	304 aa		4.07	□□□□□ -1.76
BRCA1-229	ENST00000621897	ZC2HC1C	Q53FD0	456 aa	Predicted RBP	4.07	□□□□□ -1.76
BRCA1-229	ENST00000621897	SOWAHC	Q53LP3	525 aa	Predicted RBP	4.07	□□□□□ -1.76
BRCA1-229	ENST00000621897	FAM53A	Q6NSI3	398 aa	Predicted RBP	4.07	□□□□□ -1.76
BRCA1-229	ENST00000621897	RBMS3	Q6XE24	437 aa	Known RBP	4.07	□□□□□ -1.76
BRCA1-229	ENST00000621897	TEX19	Q8NA77	164 aa		4.07	□□□□□ -1.76
BRCA1-229	ENST00000621897	SLC38A9	Q8NBW4	561 aa		4.07	□□□□□ -1.76
BRCA1-229	ENST00000621897	ETNPPL	Q8TBG4	499 aa		4.07	□□□□□ -1.76
BRCA1-229	ENST00000621897	SNRNP27	Q8WVK2	155 aa	Known RBP	4.07	□□□□□ -1.76
BRCA1-229	ENST00000621897	ZKSCAN4	Q969J2	545 aa	Predicted RBP	4.07	□□□□□ -1.76
BRCA1-229	ENST00000621897	ABHD8	Q96I13	439 aa		4.07	□□□□□ -1.76
BRCA1-229	ENST00000621897	SEC62	Q99442	399 aa	Known RBP	4.07	□□□□□ -1.76
BRCA1-229	ENST00000621897	SEPT5	Q99719	369 aa	Predicted RBP	4.07	□□□□□ -1.76
BRCA1-229	ENST00000621897	SEMA3C	Q99985	751 aa		4.07	□□□□□ -1.76
BRCA1-229	ENST00000621897	SLX1A	Q9BQ83	275 aa		4.07	□□□□□ -1.76
BRCA1-229	ENST00000621897	UBA2	Q9UBT2	640 aa	Predicted RBP	4.07	□□□□□ -1.76
BRCA1-229	ENST00000621897	PGAP2	Q9UHJ9	254 aa		4.07	□□□□□ -1.76
BRCA1-229	ENST00000621897	FBXW11	Q9UKB1	542 aa		4.07	□□□□□ -1.76
BRCA1-229	ENST00000621897	B3GALT5	Q9Y2C3	310 aa		4.07	□□□□□ -1.76
BRCA1-229	ENST00000621897	JRKL	Q9Y4A0	524 aa		4.07	□□□□□ -1.76
BRCA1-229	ENST00000621897	KCNE2	Q9Y6J6	123 aa		4.07	□□□□□ -1.76
BRCA1-229	ENST00000621897	RPGRIP1L	Q68CZ1	1315 aa		4.06	□□□□□ -1.76
BRCA1-229	ENST00000621897		A0A1B0GU03	582 aa		4.06	□□□□□ -1.76
BRCA1-229	ENST00000621897	KANSL1L	A0AUZ9	987 aa		4.06	□□□□□ -1.76
BRCA1-229	ENST00000621897	PCDH7	O60245	1069 aa		4.06	□□□□□ -1.76
BRCA1-229	ENST00000621897	RTN3	O95197	1032 aa	Predicted RBP	4.06	□□□□□ -1.76

Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms