RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 SPATA33Q96N06 139 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 AGAP4Q96P64 663 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 RBM4BQ9BQ04 359 aaKnown RBP10.74□□□□□ -0.69
UPF3A-212ENST00000619079 RBM4Q9BWF3 364 aaKnown RBP10.74□□□□□ -0.69
UPF3A-212ENST00000619079 GSTO2Q9H4Y5 243 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 IGSF5Q9NSI5 407 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 C3orf18Q9UK00 162 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 OAS3Q9Y6K5 1087 aaKnown RBP10.74□□□□□ -0.69
UPF3A-212ENST00000619079 A3GALT2U3KPV4 340 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 UPK1AO00322 258 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 ACKR2O00590 384 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 CRYZL1O95825 349 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 MT-ND1P03886 318 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 NCK1P16333 377 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 PRKCAP17252 672 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 LBPP18428 481 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 PAMP19021 973 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 CD68P34810 354 aaPredicted RBP10.73□□□□□ -0.69
UPF3A-212ENST00000619079 MRPS15P82914 257 aaKnown RBP10.73□□□□□ -0.69
UPF3A-212ENST00000619079 ZNF45Q02386 682 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 CHRNB3Q05901 458 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 CSHL1Q14406 222 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 ACAP2Q15057 778 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 PCID2Q5JVF3 399 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 STEAP3Q658P3 488 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 ZNF470Q6ECI4 717 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 CLEC6AQ6EIG7 209 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 KIAA1841Q6NSI8 718 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 PKN3Q6P5Z2 889 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 PRR23BQ6ZRT6 265 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 AADATQ8N5Z0 425 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 GABPB2Q8TAK5 448 aaPredicted RBP10.73□□□□□ -0.69
UPF3A-212ENST00000619079 TSPAN17Q96FV3 270 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 MLPHQ9BV36 600 aaPredicted RBP10.73□□□□□ -0.69
UPF3A-212ENST00000619079 FAM49AQ9H0Q0 323 aaPredicted RBP10.73□□□□□ -0.69
UPF3A-212ENST00000619079 PAK6Q9NQU5 681 aaPredicted RBP10.73□□□□□ -0.69
UPF3A-212ENST00000619079 PRELID1Q9Y255 219 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 A6NL46 340 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 FAM25AB3EWG3 89 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 FAM25CB3EWG5 89 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 FAM25GB3EWG6 89 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 PTGES3LE9PB15 166 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 MRPS14O60783 128 aaKnown RBP10.73□□□□□ -0.69
UPF3A-212ENST00000619079 HUS1O60921 280 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 GABBR2O75899 941 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 MT-CO1P00395 513 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 CPB1P15086 417 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 ACVR2AP27037 513 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 RYKP34925 604 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 IST1P53990 364 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 VBP1P61758 197 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 CTU2Q2VPK5 515 aaKnown RBP10.73□□□□□ -0.69
UPF3A-212ENST00000619079 RFX4Q33E94 735 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 RABL3Q5HYI8 236 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 GNASQ5JWF2 1037 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 WDR45BQ5MNZ6 344 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 CELF3Q5SZQ8 465 aaKnown RBP10.73□□□□□ -0.69
UPF3A-212ENST00000619079 SYT6Q5T7P8 510 aaPredicted RBP10.73□□□□□ -0.69
UPF3A-212ENST00000619079 PPP1R26Q5T8A7 1209 aaPredicted RBP10.73□□□□□ -0.69
UPF3A-212ENST00000619079 TMEM236Q5W0B7 351 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 DESI1Q6ICB0 168 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 METTL7BQ6UX53 244 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 RNF180Q86T96 592 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 SPERTQ8NA61 448 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 RNF149Q8NC42 400 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 ANKK1Q8NFD2 765 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 DNAJB14Q8TBM8 379 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 LRRC3Q9BY71 257 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 B3GNT5Q9BYG0 378 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 MAGEB5Q9BZ81 275 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 ASB7Q9H672 318 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 CDHR5Q9HBB8 845 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 TM9SF3Q9HD45 589 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 CHST12Q9NRB3 414 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 LEF1Q9UJU2 399 aaPredicted RBP10.73□□□□□ -0.69
UPF3A-212ENST00000619079 OSGIN1Q9UJX0 560 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 INTS6Q9UL03 887 aaKnown RBP10.73□□□□□ -0.69
UPF3A-212ENST00000619079 TPRKBQ9Y3C4 175 aa10.73□□□□□ -0.69
UPF3A-212ENST00000619079 AGAP5A6NIR3 686 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 PDZK1P1A8MUH7 402 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 ZBTB24O43167 697 aaPredicted RBP10.72□□□□□ -0.69
UPF3A-212ENST00000619079 EEDO75530 441 aaKnown RBP10.72□□□□□ -0.69
UPF3A-212ENST00000619079 GJB1P08034 283 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 FGF4P08620 206 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 TPH1P17752 444 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 MRPL19P49406 292 aaKnown RBP10.72□□□□□ -0.69
UPF3A-212ENST00000619079 CPT1AP50416 773 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 PGGT1BP53609 377 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 ISL1P61371 349 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 BEX3Q00994 111 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 LAMTOR4Q0VGL1 99 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 FADDQ13158 208 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 RCAN2Q14206 197 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 CDK10Q15131 360 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 CARTPTQ16568 116 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 PLEKHG6Q3KR16 790 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 ZNF404Q494X3 552 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 CCDC58Q4VC31 144 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 PYCR3Q53H96 274 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 INTS6LQ5JSJ4 861 aaKnown RBP10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms