RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 KIR2DS5A0A0G2JLQ3 304 aa18.72■□□□□ 0.59
CDX1-202ENST00000616154 A0A0G2JNG1 304 aa18.72■□□□□ 0.59
CDX1-202ENST00000616154 KIR2DS3K7RE56 304 aa18.72■□□□□ 0.59
CDX1-202ENST00000616154 CAPN5O15484 640 aaPredicted RBP18.72■□□□□ 0.59
CDX1-202ENST00000616154 MTSS1O43312 755 aa18.72■□□□□ 0.59
CDX1-202ENST00000616154 NUAK1O60285 661 aa18.72■□□□□ 0.59
CDX1-202ENST00000616154 F3P13726 295 aa18.72■□□□□ 0.59
CDX1-202ENST00000616154 TNNT1P13805 278 aa18.72■□□□□ 0.59
CDX1-202ENST00000616154 PECAM1P16284 738 aaPredicted RBP18.72■□□□□ 0.59
CDX1-202ENST00000616154 PTPN3P26045 913 aa18.72■□□□□ 0.59
CDX1-202ENST00000616154 PTPN7P35236 360 aa18.72■□□□□ 0.59
CDX1-202ENST00000616154 COPS2P61201 443 aa18.72■□□□□ 0.59
CDX1-202ENST00000616154 DYNLT1P63172 113 aa18.72■□□□□ 0.59
CDX1-202ENST00000616154 KIR2DS5Q14953 304 aa18.72■□□□□ 0.59
CDX1-202ENST00000616154 SNAP47Q5SQN1 464 aa18.72■□□□□ 0.59
CDX1-202ENST00000616154 BBS12Q6ZW61 710 aa18.72■□□□□ 0.59
CDX1-202ENST00000616154 DAAM2Q86T65 1068 aa18.72■□□□□ 0.59
CDX1-202ENST00000616154 NT5DC3Q86UY8 548 aa18.72■□□□□ 0.59
CDX1-202ENST00000616154 LRRC57Q8N9N7 239 aa18.72■□□□□ 0.59
CDX1-202ENST00000616154 AVL9Q8NBF6 648 aa18.72■□□□□ 0.59
CDX1-202ENST00000616154 TEKT5Q96M29 485 aa18.72■□□□□ 0.59
CDX1-202ENST00000616154 ADGRE3Q9BY15 652 aa18.72■□□□□ 0.59
CDX1-202ENST00000616154 SPRY4Q9C004 299 aa18.72■□□□□ 0.59
CDX1-202ENST00000616154 EPB41L1Q9H4G0 881 aa18.72■□□□□ 0.59
CDX1-202ENST00000616154 PCDHA3Q9Y5H8 950 aa18.72■□□□□ 0.59
CDX1-202ENST00000616154 DUSP10Q9Y6W6 482 aa18.72■□□□□ 0.59
CDX1-202ENST00000616154 ZNF106Q9H2Y7 1883 aaKnown RBP18.71■□□□□ 0.59
CDX1-202ENST00000616154 OR5K4A6NMS3 321 aa18.71■□□□□ 0.59
CDX1-202ENST00000616154 ZNF891A8MT65 544 aaPredicted RBP18.71■□□□□ 0.59
CDX1-202ENST00000616154 A8MU76 341 aa18.71■□□□□ 0.59
CDX1-202ENST00000616154 GRID2O43424 1007 aa18.71■□□□□ 0.59
CDX1-202ENST00000616154 CTNNA2P26232 953 aa18.71■□□□□ 0.59
CDX1-202ENST00000616154 CLCNKAP51800 687 aa18.71■□□□□ 0.59
CDX1-202ENST00000616154 WASHC5Q12768 1159 aa18.71■□□□□ 0.59
CDX1-202ENST00000616154 CEACAM20Q6UY09 585 aa18.71■□□□□ 0.59
CDX1-202ENST00000616154 TFB1MQ8WVM0 346 aaKnown RBP18.71■□□□□ 0.59
CDX1-202ENST00000616154 NCSTNQ92542 709 aa18.71■□□□□ 0.59
CDX1-202ENST00000616154 ZPBPQ9BS86 351 aa18.71■□□□□ 0.59
CDX1-202ENST00000616154 LDHAL6BQ9BYZ2 381 aaPredicted RBP18.71■□□□□ 0.59
CDX1-202ENST00000616154 GLOD4Q9HC38 313 aa18.71■□□□□ 0.59
CDX1-202ENST00000616154 FBXO8Q9NRD0 319 aa18.71■□□□□ 0.59
CDX1-202ENST00000616154 ATXN10Q9UBB4 475 aa18.71■□□□□ 0.59
CDX1-202ENST00000616154 SAE1Q9UBE0 346 aaPredicted RBP18.71■□□□□ 0.59
CDX1-202ENST00000616154 TRIM10Q9UDY6 481 aa18.71■□□□□ 0.59
CDX1-202ENST00000616154 GOLGA6L9A6NEM1 432 aa18.7■□□□□ 0.58
CDX1-202ENST00000616154 USP27XA6NNY8 438 aa18.7■□□□□ 0.58
CDX1-202ENST00000616154 KRT86O43790 486 aa18.7■□□□□ 0.58
CDX1-202ENST00000616154 SNX2O60749 519 aa18.7■□□□□ 0.58
CDX1-202ENST00000616154 MAP4P27816 1152 aaKnown RBP18.7■□□□□ 0.58
CDX1-202ENST00000616154 PHYKPLQ8IUZ5 450 aa18.7■□□□□ 0.58
CDX1-202ENST00000616154 NLGN4XQ8N0W4 816 aa18.7■□□□□ 0.58
CDX1-202ENST00000616154 RNF10Q8N5U6 811 aaKnown RBP18.7■□□□□ 0.58
CDX1-202ENST00000616154 NLGN4YQ8NFZ3 816 aaPredicted RBP18.7■□□□□ 0.58
CDX1-202ENST00000616154 P3H4Q92791 437 aa18.7■□□□□ 0.58
CDX1-202ENST00000616154 COL26A1Q96A83 441 aa18.7■□□□□ 0.58
CDX1-202ENST00000616154 EID2BQ96D98 161 aa18.7■□□□□ 0.58
CDX1-202ENST00000616154 SLC45A3Q96JT2 553 aa18.7■□□□□ 0.58
CDX1-202ENST00000616154 AGAP3Q96P47 875 aa18.7■□□□□ 0.58
CDX1-202ENST00000616154 CATSPER2Q96P56 530 aa18.7■□□□□ 0.58
CDX1-202ENST00000616154 QKIQ96PU8 341 aaKnown RBP eCLIP18.7■□□□□ 0.58
CDX1-202ENST00000616154 VAT1Q99536 393 aa18.7■□□□□ 0.58
CDX1-202ENST00000616154 CTRCQ99895 268 aa18.7■□□□□ 0.58
CDX1-202ENST00000616154 CEP41Q9BYV8 373 aa18.7■□□□□ 0.58
CDX1-202ENST00000616154 ZFYVE1Q9HBF4 777 aa18.7■□□□□ 0.58
CDX1-202ENST00000616154 NFKBIL1Q9UBC1 381 aaPredicted RBP18.7■□□□□ 0.58
CDX1-202ENST00000616154 CPNE7Q9UBL6 633 aa18.7■□□□□ 0.58
CDX1-202ENST00000616154 TUBD1Q9UJT1 453 aa18.7■□□□□ 0.58
CDX1-202ENST00000616154 CCDC66A2RUB6 948 aa18.69■□□□□ 0.58
CDX1-202ENST00000616154 LILRA5A6NI73 299 aa18.69■□□□□ 0.58
CDX1-202ENST00000616154 HACD1B0YJ81 288 aa18.69■□□□□ 0.58
CDX1-202ENST00000616154 GPR89AB7ZAQ6 455 aa18.69■□□□□ 0.58
CDX1-202ENST00000616154 APOC4-APOC2K7ER74 178 aa18.69■□□□□ 0.58
CDX1-202ENST00000616154 APOC2P02655 101 aa18.69■□□□□ 0.58
CDX1-202ENST00000616154 GPR89BP0CG08 455 aa18.69■□□□□ 0.58
CDX1-202ENST00000616154 ZNF8P17098 575 aaPredicted RBP18.69■□□□□ 0.58
CDX1-202ENST00000616154 CD68P34810 354 aaPredicted RBP18.69■□□□□ 0.58
CDX1-202ENST00000616154 MAPK9P45984 424 aa18.69■□□□□ 0.58
CDX1-202ENST00000616154 POLE2P56282 527 aa18.69■□□□□ 0.58
CDX1-202ENST00000616154 DCDC1P59894 354 aa18.69■□□□□ 0.58
CDX1-202ENST00000616154 UBE2IP63279 158 aaKnown RBP18.69■□□□□ 0.58
CDX1-202ENST00000616154 KCNAB2Q13303 367 aa18.69■□□□□ 0.58
CDX1-202ENST00000616154 XRCC4Q13426 336 aa18.69■□□□□ 0.58
CDX1-202ENST00000616154 GALNT3Q14435 633 aa18.69■□□□□ 0.58
CDX1-202ENST00000616154 ZNF569Q5MCW4 686 aa18.69■□□□□ 0.58
CDX1-202ENST00000616154 ZSCAN5AQ9BUG6 496 aa18.69■□□□□ 0.58
CDX1-202ENST00000616154 SPATA16Q9BXB7 569 aa18.69■□□□□ 0.58
CDX1-202ENST00000616154 GPN2Q9H9Y4 310 aaPredicted RBP18.69■□□□□ 0.58
CDX1-202ENST00000616154 UCK1Q9HA47 277 aa18.69■□□□□ 0.58
CDX1-202ENST00000616154 MAGEE1Q9HCI5 957 aa18.69■□□□□ 0.58
CDX1-202ENST00000616154 TRIM39Q9HCM9 518 aa18.69■□□□□ 0.58
CDX1-202ENST00000616154 TMEM184BQ9Y519 407 aaPredicted RBP18.69■□□□□ 0.58
CDX1-202ENST00000616154 MN1Q10571 1320 aaPredicted RBP18.69■□□□□ 0.58
CDX1-202ENST00000616154 NAV2Q8IVL1 2488 aa18.68■□□□□ 0.58
CDX1-202ENST00000616154 GRID2IPA4D2P6 1211 aa18.68■□□□□ 0.58
CDX1-202ENST00000616154 ANKRD34CP0C6C1 535 aa18.68■□□□□ 0.58
CDX1-202ENST00000616154 CCR10P46092 362 aa18.68■□□□□ 0.58
CDX1-202ENST00000616154 CDK18Q07002 472 aa18.68■□□□□ 0.58
CDX1-202ENST00000616154 NOMO1Q15155 1222 aa18.68■□□□□ 0.58
CDX1-202ENST00000616154 KAZNQ674X7 775 aa18.68■□□□□ 0.58
CDX1-202ENST00000616154 PDPK2PQ6A1A2 396 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms