RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 RMI1Q9H9A7 625 aa10.95□□□□□ -0.66
LIG1-211ENST00000596457 EIF2B3Q9NR50 452 aaKnown RBP10.95□□□□□ -0.66
LIG1-211ENST00000596457 CHRAC1Q9NRG0 131 aa10.95□□□□□ -0.66
LIG1-211ENST00000596457 KLC4Q9NSK0 619 aa10.95□□□□□ -0.66
LIG1-211ENST00000596457 BFARQ9NZS9 450 aa10.95□□□□□ -0.66
LIG1-211ENST00000596457 SLC2A6Q9UGQ3 507 aa10.95□□□□□ -0.66
LIG1-211ENST00000596457 ST14Q9Y5Y6 855 aa10.95□□□□□ -0.66
LIG1-211ENST00000596457 U3KQA8 63 aa10.95□□□□□ -0.66
LIG1-211ENST00000596457 KNL1Q8NG31 2342 aa10.95□□□□□ -0.66
LIG1-211ENST00000596457 DSPP15924 2871 aaKnown RBP10.95□□□□□ -0.66
LIG1-211ENST00000596457 PTPRBP23467 1997 aa10.94□□□□□ -0.66
LIG1-211ENST00000596457 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.94□□□□□ -0.66
LIG1-211ENST00000596457 FAM149AA5PLN7 773 aa10.94□□□□□ -0.66
LIG1-211ENST00000596457 CYSRT1A8MQ03 144 aa10.94□□□□□ -0.66
LIG1-211ENST00000596457 KMOO15229 486 aa10.94□□□□□ -0.66
LIG1-211ENST00000596457 AVILO75366 819 aa10.94□□□□□ -0.66
LIG1-211ENST00000596457 ZNF7P17097 686 aaPredicted RBP10.94□□□□□ -0.66
LIG1-211ENST00000596457 NPY2RP49146 381 aa10.94□□□□□ -0.66
LIG1-211ENST00000596457 PPM1FP49593 454 aaPredicted RBP10.94□□□□□ -0.66
LIG1-211ENST00000596457 ARSDP51689 593 aa10.94□□□□□ -0.66
LIG1-211ENST00000596457 MAZP56270 477 aaKnown RBP10.94□□□□□ -0.66
LIG1-211ENST00000596457 NFATC2Q13469 925 aa10.94□□□□□ -0.66
LIG1-211ENST00000596457 LAMB3Q13751 1172 aa10.94□□□□□ -0.66
LIG1-211ENST00000596457 SMAD1Q15797 465 aaKnown RBP10.94□□□□□ -0.66
LIG1-211ENST00000596457 SEPT7Q16181 437 aaKnown RBP10.94□□□□□ -0.66
LIG1-211ENST00000596457 PCID2Q5JVF3 399 aa10.94□□□□□ -0.66
LIG1-211ENST00000596457 LRRC8BQ6P9F7 803 aa10.94□□□□□ -0.66
LIG1-211ENST00000596457 CES3Q6UWW8 571 aa10.94□□□□□ -0.66
LIG1-211ENST00000596457 SNX20Q7Z614 316 aa10.94□□□□□ -0.66
LIG1-211ENST00000596457 RASGEF1AQ8N9B8 481 aa10.94□□□□□ -0.66
LIG1-211ENST00000596457 Q8N9G6 341 aaPredicted RBP10.94□□□□□ -0.66
LIG1-211ENST00000596457 OR6P1Q8NGX9 317 aa10.94□□□□□ -0.66
LIG1-211ENST00000596457 PATE1Q8WXA2 126 aa10.94□□□□□ -0.66
LIG1-211ENST00000596457 CPT1BQ92523 772 aa10.94□□□□□ -0.66
LIG1-211ENST00000596457 HDAC10Q969S8 669 aa10.94□□□□□ -0.66
LIG1-211ENST00000596457 ULK4Q96C45 1275 aa10.94□□□□□ -0.66
LIG1-211ENST00000596457 ZNF778Q96MU6 729 aa10.94□□□□□ -0.66
LIG1-211ENST00000596457 RANBP9Q96S59 729 aa10.94□□□□□ -0.66
LIG1-211ENST00000596457 KRT12Q99456 494 aa10.94□□□□□ -0.66
LIG1-211ENST00000596457 TRIM51Q9BSJ1 452 aa10.94□□□□□ -0.66
LIG1-211ENST00000596457 ZCCHC2Q9C0B9 1178 aaKnown RBP10.94□□□□□ -0.66
LIG1-211ENST00000596457 SYBUQ9NX95 663 aa10.94□□□□□ -0.66
LIG1-211ENST00000596457 NCKIPSDQ9NZQ3 722 aa10.94□□□□□ -0.66
LIG1-211ENST00000596457 FAM8A1Q9UBU6 413 aa10.94□□□□□ -0.66
LIG1-211ENST00000596457 KLK13Q9UKR3 277 aa10.94□□□□□ -0.66
LIG1-211ENST00000596457 NEU2Q9Y3R4 380 aa10.94□□□□□ -0.66
LIG1-211ENST00000596457 TCAF1Q9Y4C2 921 aa10.94□□□□□ -0.66
LIG1-211ENST00000596457 CABIN1Q9Y6J0 2220 aa10.94□□□□□ -0.66
LIG1-211ENST00000596457 CCDC162PA2VCL2 907 aa10.93□□□□□ -0.66
LIG1-211ENST00000596457 EME2A4GXA9 379 aaPredicted RBP10.93□□□□□ -0.66
LIG1-211ENST00000596457 MROH6A6NGR9 719 aa10.93□□□□□ -0.66
LIG1-211ENST00000596457 CCDC188H7C350 402 aa10.93□□□□□ -0.66
LIG1-211ENST00000596457 AP3B1O00203 1094 aa10.93□□□□□ -0.66
LIG1-211ENST00000596457 NOBOXO60393 691 aa10.93□□□□□ -0.66
LIG1-211ENST00000596457 URI1O94763 535 aaPredicted RBP10.93□□□□□ -0.66
LIG1-211ENST00000596457 GOT2P00505 430 aaKnown RBP10.93□□□□□ -0.66
LIG1-211ENST00000596457 RALBP11234 206 aa10.93□□□□□ -0.66
LIG1-211ENST00000596457 NMBRP28336 390 aa10.93□□□□□ -0.66
LIG1-211ENST00000596457 PTGIRP43119 386 aa10.93□□□□□ -0.66
LIG1-211ENST00000596457 CTSCP53634 463 aa10.93□□□□□ -0.66
LIG1-211ENST00000596457 PRAMEP78395 509 aa10.93□□□□□ -0.66
LIG1-211ENST00000596457 MRPS25P82663 173 aaKnown RBP10.93□□□□□ -0.66
LIG1-211ENST00000596457 CDK16Q00536 496 aa10.93□□□□□ -0.66
LIG1-211ENST00000596457 DR1Q01658 176 aa10.93□□□□□ -0.66
LIG1-211ENST00000596457 CACNG1Q06432 222 aa10.93□□□□□ -0.66
LIG1-211ENST00000596457 C2orf54Q08AI8 447 aa10.93□□□□□ -0.66
LIG1-211ENST00000596457 C14orf28Q4W4Y0 310 aa10.93□□□□□ -0.66
LIG1-211ENST00000596457 FNBP1LQ5T0N5 605 aa10.93□□□□□ -0.66
LIG1-211ENST00000596457 CASC4Q6P4E1 433 aa10.93□□□□□ -0.66
LIG1-211ENST00000596457 SERPINA9Q86WD7 417 aa10.93□□□□□ -0.66
LIG1-211ENST00000596457 NXPE1Q8N323 547 aa10.93□□□□□ -0.66
LIG1-211ENST00000596457 GALNT15Q8N3T1 639 aa10.93□□□□□ -0.66
LIG1-211ENST00000596457 BEND7Q8N7W2 519 aaPredicted RBP10.93□□□□□ -0.66
LIG1-211ENST00000596457 DDHD1Q8NEL9 900 aa10.93□□□□□ -0.66
LIG1-211ENST00000596457 MAPK15Q8TD08 544 aa10.93□□□□□ -0.66
LIG1-211ENST00000596457 DTX3LQ8TDB6 740 aa10.93□□□□□ -0.66
LIG1-211ENST00000596457 GATA6Q92908 595 aa10.93□□□□□ -0.66
LIG1-211ENST00000596457 CCDC74AQ96AQ1 378 aa10.93□□□□□ -0.66
LIG1-211ENST00000596457 SGF29Q96ES7 293 aa10.93□□□□□ -0.66
LIG1-211ENST00000596457 CCDC97Q96F63 343 aaPredicted RBP10.93□□□□□ -0.66
LIG1-211ENST00000596457 CCDC3Q9BQI4 270 aa10.93□□□□□ -0.66
LIG1-211ENST00000596457 TRIM31Q9BZY9 425 aa10.93□□□□□ -0.66
LIG1-211ENST00000596457 PRDM8Q9NQV8 689 aa10.93□□□□□ -0.66
LIG1-211ENST00000596457 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.93□□□□□ -0.66
LIG1-211ENST00000596457 LRIT1Q9P2V4 623 aa10.93□□□□□ -0.66
LIG1-211ENST00000596457 RNF14Q9UBS8 474 aa10.93□□□□□ -0.66
LIG1-211ENST00000596457 SLC23A2Q9UGH3 650 aa10.93□□□□□ -0.66
LIG1-211ENST00000596457 PCYOX1Q9UHG3 505 aa10.93□□□□□ -0.66
LIG1-211ENST00000596457 LHX6Q9UPM6 363 aa10.93□□□□□ -0.66
LIG1-211ENST00000596457 PCDHGA1Q9Y5H4 931 aa10.93□□□□□ -0.66
LIG1-211ENST00000596457 HELZ2Q9BYK8 2649 aaKnown RBP10.93□□□□□ -0.66
LIG1-211ENST00000596457 IGF2RP11717 2491 aa10.93□□□□□ -0.66
LIG1-211ENST00000596457 RHPN2P1A8MT19 583 aa10.92□□□□□ -0.66
LIG1-211ENST00000596457 PDZK1P1A8MUH7 402 aa10.92□□□□□ -0.66
LIG1-211ENST00000596457 GPR89AB7ZAQ6 455 aa10.92□□□□□ -0.66
LIG1-211ENST00000596457 CFAP99D6REC4 459 aa10.92□□□□□ -0.66
LIG1-211ENST00000596457 DNALI1O14645 258 aaPredicted RBP10.92□□□□□ -0.66
LIG1-211ENST00000596457 CHUKO15111 745 aa10.92□□□□□ -0.66
LIG1-211ENST00000596457 CASC3O15234 703 aaKnown RBP10.92□□□□□ -0.66
LIG1-211ENST00000596457 TTI1O43156 1089 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms