RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 TECPR1Q7Z6L1 1165 aa15.85■□□□□ 0.13
VPS53-218ENST00000575207 CA5BP1Q8WTZ4 195 aa15.85■□□□□ 0.13
VPS53-218ENST00000575207 SHC3Q92529 594 aa15.85■□□□□ 0.13
VPS53-218ENST00000575207 TBCBQ99426 244 aa15.85■□□□□ 0.13
VPS53-218ENST00000575207 NDC1Q9BTX1 674 aa15.85■□□□□ 0.13
VPS53-218ENST00000575207 NOL6Q9H6R4 1146 aaKnown RBP15.85■□□□□ 0.13
VPS53-218ENST00000575207 ZNF358Q9NW07 568 aa15.85■□□□□ 0.13
VPS53-218ENST00000575207 DNAJB12Q9NXW2 375 aaKnown RBP15.85■□□□□ 0.13
VPS53-218ENST00000575207 VPS18Q9P253 973 aa15.85■□□□□ 0.13
VPS53-218ENST00000575207 PSMD11O00231 422 aa15.84■□□□□ 0.13
VPS53-218ENST00000575207 ATMINO43313 823 aaPredicted RBP15.84■□□□□ 0.13
VPS53-218ENST00000575207 CUTAO60888 179 aa15.84■□□□□ 0.13
VPS53-218ENST00000575207 ACP5P13686 325 aa15.84■□□□□ 0.13
VPS53-218ENST00000575207 ARL4DP49703 201 aa15.84■□□□□ 0.13
VPS53-218ENST00000575207 CLCNKAP51800 687 aa15.84■□□□□ 0.13
VPS53-218ENST00000575207 STK38Q15208 465 aa15.84■□□□□ 0.13
VPS53-218ENST00000575207 PTCHD3Q3KNS1 767 aa15.84■□□□□ 0.13
VPS53-218ENST00000575207 SLC25A52Q3SY17 297 aa15.84■□□□□ 0.13
VPS53-218ENST00000575207 PRAMEF13Q5VWM6 474 aa15.84■□□□□ 0.13
VPS53-218ENST00000575207 RWDD4Q6NW29 188 aaKnown RBP15.84■□□□□ 0.13
VPS53-218ENST00000575207 BNIPLQ7Z465 357 aa15.84■□□□□ 0.13
VPS53-218ENST00000575207 PPP1R32Q7Z5V6 425 aa15.84■□□□□ 0.13
VPS53-218ENST00000575207 SRLQ86TD4 932 aa15.84■□□□□ 0.13
VPS53-218ENST00000575207 PAF1Q8N7H5 531 aa15.84■□□□□ 0.13
VPS53-218ENST00000575207 MAP3K3Q99759 626 aa15.84■□□□□ 0.13
VPS53-218ENST00000575207 NPDC1Q9NQX5 325 aaPredicted RBP15.84■□□□□ 0.13
VPS53-218ENST00000575207 OR12D3Q9UGF7 316 aa15.84■□□□□ 0.13
VPS53-218ENST00000575207 EDARQ9UNE0 448 aa15.84■□□□□ 0.13
VPS53-218ENST00000575207 ZNF835Q9Y2P0 537 aa15.84■□□□□ 0.13
VPS53-218ENST00000575207 ANK3Q12955 4377 aaKnown RBP15.83■□□□□ 0.13
VPS53-218ENST00000575207 AGPSO00116 658 aa15.83■□□□□ 0.12
VPS53-218ENST00000575207 HTRA2O43464 458 aaPredicted RBP15.83■□□□□ 0.12
VPS53-218ENST00000575207 LETM1O95202 739 aaPredicted RBP15.83■□□□□ 0.12
VPS53-218ENST00000575207 ZWINTO95229 277 aa15.83■□□□□ 0.12
VPS53-218ENST00000575207 F12P00748 615 aaPredicted RBP15.83■□□□□ 0.12
VPS53-218ENST00000575207 HOXC12P31275 282 aa15.83■□□□□ 0.12
VPS53-218ENST00000575207 VIPR1P32241 457 aa15.83■□□□□ 0.12
VPS53-218ENST00000575207 RGRP47804 291 aa15.83■□□□□ 0.12
VPS53-218ENST00000575207 BCL2L1Q07817 233 aa15.83■□□□□ 0.12
VPS53-218ENST00000575207 ABRQ12979 859 aa15.83■□□□□ 0.12
VPS53-218ENST00000575207 CYP2A13Q16696 494 aa15.83■□□□□ 0.12
VPS53-218ENST00000575207 ZCWPW2Q504Y3 356 aa15.83■□□□□ 0.12
VPS53-218ENST00000575207 DENND2CQ68D51 928 aa15.83■□□□□ 0.12
VPS53-218ENST00000575207 Q6ZPB1 254 aaPredicted RBP15.83■□□□□ 0.12
VPS53-218ENST00000575207 NLRP8Q86W28 1048 aa15.83■□□□□ 0.12
VPS53-218ENST00000575207 TRIM48Q8IWZ4 208 aa15.83■□□□□ 0.12
VPS53-218ENST00000575207 AOPEPQ8N6M6 819 aa15.83■□□□□ 0.12
VPS53-218ENST00000575207 DNAAF3Q8N9W5 541 aa15.83■□□□□ 0.12
VPS53-218ENST00000575207 PHF10Q8WUB8 498 aaKnown RBP15.83■□□□□ 0.12
VPS53-218ENST00000575207 LMF1Q96S06 567 aa15.83■□□□□ 0.12
VPS53-218ENST00000575207 SLC40A1Q9NP59 571 aa15.83■□□□□ 0.12
VPS53-218ENST00000575207 POT1Q9NUX5 634 aa15.83■□□□□ 0.12
VPS53-218ENST00000575207 PLEKHA6Q9Y2H5 1048 aa15.83■□□□□ 0.12
VPS53-218ENST00000575207 CCDC88CQ9P219 2028 aa15.82■□□□□ 0.12
VPS53-218ENST00000575207 ANKRD12Q6UB98 2062 aa15.82■□□□□ 0.12
VPS53-218ENST00000575207 SLCO2B1O94956 709 aa15.82■□□□□ 0.12
VPS53-218ENST00000575207 CRYABP02511 175 aaKnown RBP15.82■□□□□ 0.12
VPS53-218ENST00000575207 LHCGRP22888 699 aa15.82■□□□□ 0.12
VPS53-218ENST00000575207 SPAM1P38567 509 aa15.82■□□□□ 0.12
VPS53-218ENST00000575207 GCNT1Q02742 428 aa15.82■□□□□ 0.12
VPS53-218ENST00000575207 GPR18Q14330 331 aa15.82■□□□□ 0.12
VPS53-218ENST00000575207 ZNF385CQ66K41 422 aaPredicted RBP15.82■□□□□ 0.12
VPS53-218ENST00000575207 NCCRP1Q6ZVX7 275 aaPredicted RBP15.82■□□□□ 0.12
VPS53-218ENST00000575207 PHYKPLQ8IUZ5 450 aa15.82■□□□□ 0.12
VPS53-218ENST00000575207 RBM12BQ8IXT5 1001 aaKnown RBP15.82■□□□□ 0.12
VPS53-218ENST00000575207 LINC00301Q8NCQ3 95 aa15.82■□□□□ 0.12
VPS53-218ENST00000575207 UBA2Q9UBT2 640 aaPredicted RBP15.82■□□□□ 0.12
VPS53-218ENST00000575207 HCFC1P51610 2035 aa15.82■□□□□ 0.12
VPS53-218ENST00000575207 SONP18583 2426 aaKnown RBP15.82■□□□□ 0.12
VPS53-218ENST00000575207 INAFM1C9JVW0 142 aa15.81■□□□□ 0.12
VPS53-218ENST00000575207 ASMTLO95671 621 aa15.81■□□□□ 0.12
VPS53-218ENST00000575207 ERBB2P04626 1255 aa15.81■□□□□ 0.12
VPS53-218ENST00000575207 UGT1A4P22310 534 aa15.81■□□□□ 0.12
VPS53-218ENST00000575207 FOLR3P41439 243 aa15.81■□□□□ 0.12
VPS53-218ENST00000575207 DGKQP52824 942 aa15.81■□□□□ 0.12
VPS53-218ENST00000575207 PPP2R2BQ00005 443 aa15.81■□□□□ 0.12
VPS53-218ENST00000575207 MFAP5Q13361 173 aa15.81■□□□□ 0.12
VPS53-218ENST00000575207 ISLR2Q6UXK2 745 aa15.81■□□□□ 0.12
VPS53-218ENST00000575207 RRAGAQ7L523 313 aa15.81■□□□□ 0.12
VPS53-218ENST00000575207 PHLDB2Q86SQ0 1253 aa15.81■□□□□ 0.12
VPS53-218ENST00000575207 FAM131BQ86XD5 332 aa15.81■□□□□ 0.12
VPS53-218ENST00000575207 CEP57L1Q8IYX8 460 aa15.81■□□□□ 0.12
VPS53-218ENST00000575207 ANKRD20A12PQ8NF67 263 aa15.81■□□□□ 0.12
VPS53-218ENST00000575207 OR2Y1Q8NGV0 311 aa15.81■□□□□ 0.12
VPS53-218ENST00000575207 NACC2Q96BF6 587 aa15.81■□□□□ 0.12
VPS53-218ENST00000575207 CD180Q99467 661 aa15.81■□□□□ 0.12
VPS53-218ENST00000575207 RMI1Q9H9A7 625 aa15.81■□□□□ 0.12
VPS53-218ENST00000575207 ACTR5Q9H9F9 607 aaPredicted RBP15.81■□□□□ 0.12
VPS53-218ENST00000575207 PTRH2Q9Y3E5 179 aaKnown RBP15.81■□□□□ 0.12
VPS53-218ENST00000575207 HRNRQ86YZ3 2850 aaPredicted RBP15.81■□□□□ 0.12
VPS53-218ENST00000575207 TRAV17A0A0B4J275 112 aa15.8■□□□□ 0.12
VPS53-218ENST00000575207 CTAG2O75638 210 aa15.8■□□□□ 0.12
VPS53-218ENST00000575207 PYGLP06737 847 aa15.8■□□□□ 0.12
VPS53-218ENST00000575207 UNGP13051 313 aaPredicted RBP15.8■□□□□ 0.12
VPS53-218ENST00000575207 KRT5P13647 590 aa15.8■□□□□ 0.12
VPS53-218ENST00000575207 AGXTP21549 392 aa15.8■□□□□ 0.12
VPS53-218ENST00000575207 YBEYP58557 167 aaPredicted RBP15.8■□□□□ 0.12
VPS53-218ENST00000575207 TFF3Q07654 80 aa15.8■□□□□ 0.12
VPS53-218ENST00000575207 DMPKQ09013 629 aa15.8■□□□□ 0.12
VPS53-218ENST00000575207 ZNF789Q5FWF6 425 aa15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms