RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 TFF2Q03403 129 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 ITIH3Q06033 890 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 CAMK2DQ13557 499 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 NRN1LQ496H8 165 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 PABPC1LQ4VXU2 614 aaKnown RBP6.17□□□□□ -1.42
VPS53-212ENST00000572259 XKR4Q5GH76 650 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 MPP7Q5T2T1 576 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 ATXN7L2Q5T6C5 722 aaPredicted RBP6.17□□□□□ -1.42
VPS53-212ENST00000572259 DCAF12L1Q5VU92 463 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 FUT10Q6P4F1 479 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 NCEH1Q6PIU2 408 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 ALKAL1Q6UXT8 129 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 TMEM184AQ6ZMB5 413 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 RGS9BPQ6ZS82 235 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 SEM1Q6ZVN7 128 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 LPCAT2Q7L5N7 544 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 RASGRP3Q8IV61 690 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 PEX5LQ8IYB4 626 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 MAML2Q8IZL2 1156 aaPredicted RBP6.17□□□□□ -1.42
VPS53-212ENST00000572259 MPP5Q8N3R9 675 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 MDGA1Q8NFP4 955 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 BEST2Q8NFU1 509 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 NLGN4YQ8NFZ3 816 aaPredicted RBP6.17□□□□□ -1.42
VPS53-212ENST00000572259 FAM216AQ8WUB2 273 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 CACTINQ8WUQ7 758 aaKnown RBP6.17□□□□□ -1.42
VPS53-212ENST00000572259 SLC22A18Q96BI1 424 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 MIEF2Q96C03 454 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 LOXL4Q96JB6 756 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 GCNAQ96QF7 691 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 ABHD1Q96SE0 405 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 TTPALQ9BTX7 342 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 BDH2Q9BUT1 245 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 HERC2P3Q9BVR0 1158 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 TRIM9Q9C026 710 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 KLHL4Q9C0H6 718 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 REXO4Q9GZR2 422 aaKnown RBP6.17□□□□□ -1.42
VPS53-212ENST00000572259 ZBP1Q9H171 429 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 ASB7Q9H672 318 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 NRIP3Q9NQ35 241 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 TMLHEQ9NVH6 421 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 ANO10Q9NW15 660 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 SIDT1Q9NXL6 827 aaKnown RBP6.17□□□□□ -1.42
VPS53-212ENST00000572259 CGNQ9P2M7 1197 aaKnown RBP6.17□□□□□ -1.42
VPS53-212ENST00000572259 AGO2Q9UKV8 859 aaKnown RBP6.17□□□□□ -1.42
VPS53-212ENST00000572259 SARDHQ9UL12 918 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 UBQLN1Q9UMX0 589 aaKnown RBP6.17□□□□□ -1.42
VPS53-212ENST00000572259 A0A087WWL8 130 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 TTC26A0AVF1 554 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 FRMD3A2A2Y4 597 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 HIDE1A8MVS5 230 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 PATE3B3GLJ2 98 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 H3BQ06 376 aaPredicted RBP6.16□□□□□ -1.42
VPS53-212ENST00000572259 H7C4K7 107 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 TMEM189-UBE2V1I3L0A0 370 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 PTGESO14684 152 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 ZNF263O14978 683 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 SCAMP1O15126 338 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 RIPK2O43353 540 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 TNFSF14O43557 240 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 KIF1CO43896 1103 aaKnown RBP6.16□□□□□ -1.42
VPS53-212ENST00000572259 MATN4O95460 622 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 GLUD1P00367 558 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 EDN1P05305 212 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 TPOP07202 933 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 CXCL8P10145 99 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 PFKFB1P16118 471 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 HK1P19367 917 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 TYMPP19971 482 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 CYP3A5P20815 502 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 CPT2P23786 658 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 MGAT1P26572 445 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 ACAA2P42765 397 aaKnown RBP6.16□□□□□ -1.42
VPS53-212ENST00000572259 GPD2P43304 727 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 RPL7AP62424 266 aaKnown RBP6.16□□□□□ -1.42
VPS53-212ENST00000572259 POU6F2P78424 691 aaPredicted RBP6.16□□□□□ -1.42
VPS53-212ENST00000572259 ARF5P84085 180 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 PLP2Q04941 152 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 TBL3Q12788 808 aaKnown RBP6.16□□□□□ -1.42
VPS53-212ENST00000572259 SLC29A2Q14542 456 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 TMEM132DQ14C87 1099 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 UBXN2BQ14CS0 331 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 TRADDQ15628 312 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 UPP1Q16831 310 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 GEN1Q17RS7 908 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 ZC2HC1CQ53FD0 456 aaPredicted RBP6.16□□□□□ -1.42
VPS53-212ENST00000572259 FAM171A1Q5VUB5 890 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 DGAT2L7PQ6IED9 249 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 ARMCX5Q6P1M9 558 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 OTOAQ7RTW8 1153 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 ADGRD2Q7Z7M1 963 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 CEP57Q86XR8 500 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 FSIP1Q8NA03 581 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 ZBTB8BQ8NAP8 495 aaPredicted RBP6.16□□□□□ -1.42
VPS53-212ENST00000572259 GOLGA5Q8TBA6 731 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 Q8TCH9 128 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 LRRC15Q8TF66 581 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 HDAC7Q8WUI4 952 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 WDR60Q8WVS4 1066 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 FER1L6-AS2Q96M78 137 aa6.16□□□□□ -1.42
VPS53-212ENST00000572259 NECTIN4Q96NY8 510 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms