RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 SLC19A1P41440 591 aa15.84■□□□□ 0.13
CLN3-229ENST00000567963 WASHC5Q12768 1159 aa15.84■□□□□ 0.13
CLN3-229ENST00000567963 TFDP2Q14188 446 aa15.84■□□□□ 0.13
CLN3-229ENST00000567963 PLA2G4EQ3MJ16 856 aa15.84■□□□□ 0.13
CLN3-229ENST00000567963 KHDC1Q4VXA5 237 aaKnown RBP15.84■□□□□ 0.13
CLN3-229ENST00000567963 TMEM26Q6ZUK4 368 aa15.84■□□□□ 0.13
CLN3-229ENST00000567963 CNGA4Q8IV77 575 aa15.84■□□□□ 0.13
CLN3-229ENST00000567963 NLGN4XQ8N0W4 816 aa15.84■□□□□ 0.13
CLN3-229ENST00000567963 NLGN4YQ8NFZ3 816 aaPredicted RBP15.84■□□□□ 0.13
CLN3-229ENST00000567963 TIMM29Q9BSF4 260 aa15.84■□□□□ 0.13
CLN3-229ENST00000567963 ANP32EQ9BTT0 268 aa15.84■□□□□ 0.13
CLN3-229ENST00000567963 GEMIN8Q9NWZ8 242 aaKnown RBP15.84■□□□□ 0.13
CLN3-229ENST00000567963 OGFRQ9NZT2 677 aa15.84■□□□□ 0.13
CLN3-229ENST00000567963 FAM153AQ9UHL3 310 aa15.84■□□□□ 0.13
CLN3-229ENST00000567963 DNAJC16Q9Y2G8 782 aa15.84■□□□□ 0.13
CLN3-229ENST00000567963 ALG6Q9Y672 507 aa15.84■□□□□ 0.13
CLN3-229ENST00000567963 FLNBO75369 2602 aaKnown RBP15.83■□□□□ 0.12
CLN3-229ENST00000567963 POLR1CO15160 346 aaPredicted RBP15.83■□□□□ 0.12
CLN3-229ENST00000567963 CAPN5O15484 640 aaPredicted RBP15.83■□□□□ 0.12
CLN3-229ENST00000567963 UBXN7O94888 489 aa15.83■□□□□ 0.12
CLN3-229ENST00000567963 C9P02748 559 aa15.83■□□□□ 0.12
CLN3-229ENST00000567963 ANKRD34CP0C6C1 535 aa15.83■□□□□ 0.12
CLN3-229ENST00000567963 PECAM1P16284 738 aaPredicted RBP15.83■□□□□ 0.12
CLN3-229ENST00000567963 ADCY2Q08462 1091 aa15.83■□□□□ 0.12
CLN3-229ENST00000567963 TMEM115Q12893 351 aaPredicted RBP15.83■□□□□ 0.12
CLN3-229ENST00000567963 LLGL1Q15334 1064 aa15.83■□□□□ 0.12
CLN3-229ENST00000567963 SEPT7Q16181 437 aaKnown RBP15.83■□□□□ 0.12
CLN3-229ENST00000567963 ATP13A5Q4VNC0 1218 aa15.83■□□□□ 0.12
CLN3-229ENST00000567963 KAZNQ674X7 775 aa15.83■□□□□ 0.12
CLN3-229ENST00000567963 BORAQ6PGQ7 559 aa15.83■□□□□ 0.12
CLN3-229ENST00000567963 ABRAXAS1Q6UWZ7 409 aa15.83■□□□□ 0.12
CLN3-229ENST00000567963 TIPARPQ7Z3E1 657 aaKnown RBP15.83■□□□□ 0.12
CLN3-229ENST00000567963 SLC45A3Q96JT2 553 aa15.83■□□□□ 0.12
CLN3-229ENST00000567963 TMEM184BQ9Y519 407 aaPredicted RBP15.83■□□□□ 0.12
CLN3-229ENST00000567963 SLC30A1Q9Y6M5 507 aa15.83■□□□□ 0.12
CLN3-229ENST00000567963 AKR1B15C9JRZ8 316 aaPredicted RBP15.82■□□□□ 0.12
CLN3-229ENST00000567963 MTSS1O43312 755 aa15.82■□□□□ 0.12
CLN3-229ENST00000567963 PSTPIP1O43586 416 aa15.82■□□□□ 0.12
CLN3-229ENST00000567963 STK17BO94768 372 aa15.82■□□□□ 0.12
CLN3-229ENST00000567963 EPOP01588 193 aa15.82■□□□□ 0.12
CLN3-229ENST00000567963 BRAFP15056 766 aa15.82■□□□□ 0.12
CLN3-229ENST00000567963 NFKB1P19838 968 aa15.82■□□□□ 0.12
CLN3-229ENST00000567963 RPL10P27635 214 aaKnown RBP15.82■□□□□ 0.12
CLN3-229ENST00000567963 HADHBP55084 474 aaKnown RBP15.82■□□□□ 0.12
CLN3-229ENST00000567963 GFERP55789 205 aa15.82■□□□□ 0.12
CLN3-229ENST00000567963 WNT3AP56704 352 aa15.82■□□□□ 0.12
CLN3-229ENST00000567963 NFKB2Q00653 900 aa15.82■□□□□ 0.12
CLN3-229ENST00000567963 KCNC4Q03721 635 aa15.82■□□□□ 0.12
CLN3-229ENST00000567963 TBX2Q13207 712 aaPredicted RBP15.82■□□□□ 0.12
CLN3-229ENST00000567963 TFDP3Q5H9I0 405 aa15.82■□□□□ 0.12
CLN3-229ENST00000567963 KDELC1Q6UW63 502 aa15.82■□□□□ 0.12
CLN3-229ENST00000567963 WASH2PQ6VEQ5 465 aa15.82■□□□□ 0.12
CLN3-229ENST00000567963 SPOCD1Q6ZMY3 1216 aa15.82■□□□□ 0.12
CLN3-229ENST00000567963 C11orf96Q7Z7L8 435 aa15.82■□□□□ 0.12
CLN3-229ENST00000567963 TRIM48Q8IWZ4 208 aa15.82■□□□□ 0.12
CLN3-229ENST00000567963 DTX3LQ8TDB6 740 aa15.82■□□□□ 0.12
CLN3-229ENST00000567963 P3H4Q92791 437 aa15.82■□□□□ 0.12
CLN3-229ENST00000567963 C9orf72Q96LT7 481 aa15.82■□□□□ 0.12
CLN3-229ENST00000567963 SLC25A18Q9H1K4 315 aa15.82■□□□□ 0.12
CLN3-229ENST00000567963 TSPY26PQ9H489 355 aa15.82■□□□□ 0.12
CLN3-229ENST00000567963 TRABDQ9H4I3 376 aa15.82■□□□□ 0.12
CLN3-229ENST00000567963 IL26Q9NPH9 171 aa15.82■□□□□ 0.12
CLN3-229ENST00000567963 WASH6PQ9NQA3 447 aa15.82■□□□□ 0.12
CLN3-229ENST00000567963 LOC101059948A0A1B0GTJ6 334 aa15.81■□□□□ 0.12
CLN3-229ENST00000567963 ZNF891A8MT65 544 aaPredicted RBP15.81■□□□□ 0.12
CLN3-229ENST00000567963 PDZK1P1A8MUH7 402 aa15.81■□□□□ 0.12
CLN3-229ENST00000567963 TOX3O15405 576 aaPredicted RBP15.81■□□□□ 0.12
CLN3-229ENST00000567963 SUV39H1O43463 412 aa15.81■□□□□ 0.12
CLN3-229ENST00000567963 PPFIA2O75334 1257 aa15.81■□□□□ 0.12
CLN3-229ENST00000567963 WISP1O95388 367 aa15.81■□□□□ 0.12
CLN3-229ENST00000567963 TYRP1P17643 537 aa15.81■□□□□ 0.12
CLN3-229ENST00000567963 AMD1P17707 334 aa15.81■□□□□ 0.12
CLN3-229ENST00000567963 IDSP22304 550 aa15.81■□□□□ 0.12
CLN3-229ENST00000567963 ABHD18Q0P651 414 aa15.81■□□□□ 0.12
CLN3-229ENST00000567963 NOMO1Q15155 1222 aa15.81■□□□□ 0.12
CLN3-229ENST00000567963 SIRPB2Q5JXA9 342 aa15.81■□□□□ 0.12
CLN3-229ENST00000567963 AGAP9Q5VTM2 703 aa15.81■□□□□ 0.12
CLN3-229ENST00000567963 PID1Q7Z2X4 250 aa15.81■□□□□ 0.12
CLN3-229ENST00000567963 ZC3H18Q86VM9 953 aaKnown RBP15.81■□□□□ 0.12
CLN3-229ENST00000567963 TTC30BQ8N4P2 665 aa15.81■□□□□ 0.12
CLN3-229ENST00000567963 RNF214Q8ND24 703 aa15.81■□□□□ 0.12
CLN3-229ENST00000567963 GDAP1Q8TB36 358 aa15.81■□□□□ 0.12
CLN3-229ENST00000567963 BRSK1Q8TDC3 778 aa15.81■□□□□ 0.12
CLN3-229ENST00000567963 KIAA1143Q96AT1 154 aaPredicted RBP15.81■□□□□ 0.12
CLN3-229ENST00000567963 MRGPRX2Q96LB1 330 aa15.81■□□□□ 0.12
CLN3-229ENST00000567963 VAT1Q99536 393 aa15.81■□□□□ 0.12
CLN3-229ENST00000567963 EFHD1Q9BUP0 239 aa15.81■□□□□ 0.12
CLN3-229ENST00000567963 ADNPQ9H2P0 1102 aa15.81■□□□□ 0.12
CLN3-229ENST00000567963 TRIT1Q9H3H1 467 aaKnown RBP15.81■□□□□ 0.12
CLN3-229ENST00000567963 CLMPQ9H6B4 373 aa15.81■□□□□ 0.12
CLN3-229ENST00000567963 GPN2Q9H9Y4 310 aaPredicted RBP15.81■□□□□ 0.12
CLN3-229ENST00000567963 SLC40A1Q9NP59 571 aa15.81■□□□□ 0.12
CLN3-229ENST00000567963 POT1Q9NUX5 634 aa15.81■□□□□ 0.12
CLN3-229ENST00000567963 SIDT1Q9NXL6 827 aaKnown RBP15.81■□□□□ 0.12
CLN3-229ENST00000567963 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP15.81■□□□□ 0.12
CLN3-229ENST00000567963 OR52A4PA6NMU1 304 aa15.8■□□□□ 0.12
CLN3-229ENST00000567963 NKX2-8O15522 239 aa15.8■□□□□ 0.12
CLN3-229ENST00000567963 ZRANB2O95218 330 aaKnown RBP eCLIP15.8■□□□□ 0.12
CLN3-229ENST00000567963 DLGAP3O95886 979 aa15.8■□□□□ 0.12
CLN3-229ENST00000567963 MAGEA1P43355 309 aa15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms