RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 ITGALP20701 1170 aa13.21□□□□□ -0.29
CLK3-216ENST00000564468 UGT1A1P22309 533 aa13.21□□□□□ -0.29
CLK3-216ENST00000564468 UGT1A4P22310 534 aa13.21□□□□□ -0.29
CLK3-216ENST00000564468 AKT1P31749 480 aa13.21□□□□□ -0.29
CLK3-216ENST00000564468 CXCR5P32302 372 aa13.21□□□□□ -0.29
CLK3-216ENST00000564468 UGT1A3P35503 534 aa13.21□□□□□ -0.29
CLK3-216ENST00000564468 UGT1A5P35504 534 aa13.21□□□□□ -0.29
CLK3-216ENST00000564468 LSSP48449 732 aa13.21□□□□□ -0.29
CLK3-216ENST00000564468 CDH17Q12864 832 aa13.21□□□□□ -0.29
CLK3-216ENST00000564468 MSLNQ13421 630 aaPredicted RBP13.21□□□□□ -0.29
CLK3-216ENST00000564468 OLIG2Q13516 323 aa13.21□□□□□ -0.29
CLK3-216ENST00000564468 SIX1Q15475 284 aaPredicted RBP13.21□□□□□ -0.29
CLK3-216ENST00000564468 ZNF648Q5T619 568 aaPredicted RBP13.21□□□□□ -0.29
CLK3-216ENST00000564468 IYDQ6PHW0 289 aa13.21□□□□□ -0.29
CLK3-216ENST00000564468 CRTC3Q6UUV7 619 aa13.21□□□□□ -0.29
CLK3-216ENST00000564468 PPP1R21Q6ZMI0 780 aa13.21□□□□□ -0.29
CLK3-216ENST00000564468 PIM3Q86V86 326 aa13.21□□□□□ -0.29
CLK3-216ENST00000564468 TRAPPC5Q8IUR0 188 aa13.21□□□□□ -0.29
CLK3-216ENST00000564468 REXO1L1PQ8IX06 675 aa13.21□□□□□ -0.29
CLK3-216ENST00000564468 SFRP1Q8N474 314 aa13.21□□□□□ -0.29
CLK3-216ENST00000564468 DNAAF3Q8N9W5 541 aa13.21□□□□□ -0.29
CLK3-216ENST00000564468 STYXQ8WUJ0 223 aa13.21□□□□□ -0.29
CLK3-216ENST00000564468 DPYSL5Q9BPU6 564 aa13.21□□□□□ -0.29
CLK3-216ENST00000564468 LDHAL6BQ9BYZ2 381 aaPredicted RBP13.21□□□□□ -0.29
CLK3-216ENST00000564468 OSGEPL1Q9H4B0 414 aa13.21□□□□□ -0.29
CLK3-216ENST00000564468 POLR1BQ9H9Y6 1135 aa13.21□□□□□ -0.29
CLK3-216ENST00000564468 UGT1A7Q9HAW7 530 aa13.21□□□□□ -0.29
CLK3-216ENST00000564468 UGT1A10Q9HAW8 530 aa13.21□□□□□ -0.29
CLK3-216ENST00000564468 UGT1A8Q9HAW9 530 aa13.21□□□□□ -0.29
CLK3-216ENST00000564468 ETNK1Q9HBU6 452 aa13.21□□□□□ -0.29
CLK3-216ENST00000564468 RAB6BQ9NRW1 208 aa13.21□□□□□ -0.29
CLK3-216ENST00000564468 KLC4Q9NSK0 619 aa13.21□□□□□ -0.29
CLK3-216ENST00000564468 TBC1D29Q9UFV1 150 aa13.21□□□□□ -0.29
CLK3-216ENST00000564468 FKBPLQ9UIM3 349 aa13.21□□□□□ -0.29
CLK3-216ENST00000564468 RABGEF1Q9UJ41 708 aa13.21□□□□□ -0.29
CLK3-216ENST00000564468 PCDHB1Q9Y5F3 818 aa13.21□□□□□ -0.29
CLK3-216ENST00000564468 ENTPD2Q9Y5L3 495 aa13.21□□□□□ -0.29
CLK3-216ENST00000564468 SLC30A1Q9Y6M5 507 aa13.21□□□□□ -0.29
CLK3-216ENST00000564468 CCDC187A0A096LP49 1063 aa13.2□□□□□ -0.3
CLK3-216ENST00000564468 A0A1W2PQM1 296 aa13.2□□□□□ -0.3
CLK3-216ENST00000564468 CFAP99D6REC4 459 aa13.2□□□□□ -0.3
CLK3-216ENST00000564468 AP3B1O00203 1094 aa13.2□□□□□ -0.3
CLK3-216ENST00000564468 LDB2O43679 373 aa13.2□□□□□ -0.3
CLK3-216ENST00000564468 SNX2O60749 519 aa13.2□□□□□ -0.3
CLK3-216ENST00000564468 SUN1O94901 812 aa13.2□□□□□ -0.3
CLK3-216ENST00000564468 CPNE6O95741 557 aa13.2□□□□□ -0.3
CLK3-216ENST00000564468 IDSP22304 550 aa13.2□□□□□ -0.3
CLK3-216ENST00000564468 ALDH4A1P30038 563 aa13.2□□□□□ -0.3
CLK3-216ENST00000564468 MLLT3P42568 568 aaPredicted RBP13.2□□□□□ -0.3
CLK3-216ENST00000564468 ZNF140P52738 457 aaPredicted RBP13.2□□□□□ -0.3
CLK3-216ENST00000564468 INHBCP55103 352 aa13.2□□□□□ -0.3
CLK3-216ENST00000564468 GPLD1P80108 840 aa13.2□□□□□ -0.3
CLK3-216ENST00000564468 B4GALNT1Q00973 533 aa13.2□□□□□ -0.3
CLK3-216ENST00000564468 HHEXQ03014 270 aa13.2□□□□□ -0.3
CLK3-216ENST00000564468 C19orf57Q0VDD7 668 aa13.2□□□□□ -0.3
CLK3-216ENST00000564468 EIF3IQ13347 325 aaKnown RBP13.2□□□□□ -0.3
CLK3-216ENST00000564468 NFATC2Q13469 925 aa13.2□□□□□ -0.3
CLK3-216ENST00000564468 SEMA5AQ13591 1074 aa13.2□□□□□ -0.3
CLK3-216ENST00000564468 SKIDA1Q1XH10 827 aa13.2□□□□□ -0.3
CLK3-216ENST00000564468 GPR33Q49SQ1 333 aa13.2□□□□□ -0.3
CLK3-216ENST00000564468 GPRC6AQ5T6X5 926 aa13.2□□□□□ -0.3
CLK3-216ENST00000564468 SNX20Q7Z614 316 aa13.2□□□□□ -0.3
CLK3-216ENST00000564468 SFTPA2Q8IWL1 248 aa13.2□□□□□ -0.3
CLK3-216ENST00000564468 TAB3Q8N5C8 712 aaPredicted RBP13.2□□□□□ -0.3
CLK3-216ENST00000564468 OR13C4Q8NGS5 318 aa13.2□□□□□ -0.3
CLK3-216ENST00000564468 WDR36Q8NI36 951 aaKnown RBP13.2□□□□□ -0.3
CLK3-216ENST00000564468 SLC37A2Q8TED4 501 aa13.2□□□□□ -0.3
CLK3-216ENST00000564468 PATE1Q8WXA2 126 aa13.2□□□□□ -0.3
CLK3-216ENST00000564468 TMEM159Q96B96 161 aa13.2□□□□□ -0.3
CLK3-216ENST00000564468 DCUN1D1Q96GG9 259 aa13.2□□□□□ -0.3
CLK3-216ENST00000564468 LIN37Q96GY3 246 aaPredicted RBP13.2□□□□□ -0.3
CLK3-216ENST00000564468 PDLIM2Q96JY6 352 aa13.2□□□□□ -0.3
CLK3-216ENST00000564468 SLC38A3Q99624 504 aa13.2□□□□□ -0.3
CLK3-216ENST00000564468 SARS2Q9NP81 518 aaKnown RBP13.2□□□□□ -0.3
CLK3-216ENST00000564468 NLE1Q9NVX2 485 aaPredicted RBP13.2□□□□□ -0.3
CLK3-216ENST00000564468 CRLS1Q9UJA2 301 aa13.2□□□□□ -0.3
CLK3-216ENST00000564468 TMPRSS11EQ9UL52 423 aa13.2□□□□□ -0.3
CLK3-216ENST00000564468 PCYT1BQ9Y5K3 369 aaPredicted RBP13.2□□□□□ -0.3
CLK3-216ENST00000564468 BPTFQ12830 3046 aa13.2□□□□□ -0.3
CLK3-216ENST00000564468 KALRNO60229 2985 aa13.19□□□□□ -0.3
CLK3-216ENST00000564468 HEATR9A2RTY3 570 aa13.19□□□□□ -0.3
CLK3-216ENST00000564468 AGAP14A8MT82 685 aa13.19□□□□□ -0.3
CLK3-216ENST00000564468 H7C0S8 307 aa13.19□□□□□ -0.3
CLK3-216ENST00000564468 GAPDHSO14556 408 aaPredicted RBP13.19□□□□□ -0.3
CLK3-216ENST00000564468 PPM1DO15297 605 aa13.19□□□□□ -0.3
CLK3-216ENST00000564468 DXOO77932 396 aaKnown RBP13.19□□□□□ -0.3
CLK3-216ENST00000564468 APRTP07741 180 aa13.19□□□□□ -0.3
CLK3-216ENST00000564468 TPH1P17752 444 aa13.19□□□□□ -0.3
CLK3-216ENST00000564468 RBMS1P29558 406 aaKnown RBP13.19□□□□□ -0.3
CLK3-216ENST00000564468 CCKBRP32239 447 aa13.19□□□□□ -0.3
CLK3-216ENST00000564468 GABREP78334 506 aa13.19□□□□□ -0.3
CLK3-216ENST00000564468 TMPRSS15P98073 1019 aa13.19□□□□□ -0.3
CLK3-216ENST00000564468 XIAPP98170 497 aa13.19□□□□□ -0.3
CLK3-216ENST00000564468 SQSTM1Q13501 440 aa13.19□□□□□ -0.3
CLK3-216ENST00000564468 SEPT6Q14141 434 aa13.19□□□□□ -0.3
CLK3-216ENST00000564468 PTPRCAPQ14761 206 aa13.19□□□□□ -0.3
CLK3-216ENST00000564468 POU6F1Q14863 301 aa13.19□□□□□ -0.3
CLK3-216ENST00000564468 PLA2G4EQ3MJ16 856 aa13.19□□□□□ -0.3
CLK3-216ENST00000564468 MAP9Q49MG5 647 aa13.19□□□□□ -0.3
CLK3-216ENST00000564468 KHDC1Q4VXA5 237 aaKnown RBP13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms