RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 UGT3A1Q6NUS8 523 aa21.03■□□□□ 0.96
CLN3-209ENST00000561689 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP21.03■□□□□ 0.96
CLN3-209ENST00000561689 NKAPQ8N5F7 415 aaKnown RBP21.03■□□□□ 0.96
CLN3-209ENST00000561689 EXT2Q93063 718 aa21.03■□□□□ 0.96
CLN3-209ENST00000561689 LINGO1Q96FE5 620 aa21.03■□□□□ 0.96
CLN3-209ENST00000561689 DTD2Q96FN9 168 aa21.03■□□□□ 0.96
CLN3-209ENST00000561689 GABRG3Q99928 467 aa21.03■□□□□ 0.96
CLN3-209ENST00000561689 CYP4F12Q9HCS2 524 aa21.03■□□□□ 0.96
CLN3-209ENST00000561689 SMOXQ9NWM0 555 aa21.03■□□□□ 0.96
CLN3-209ENST00000561689 NFKBIL1Q9UBC1 381 aaPredicted RBP21.03■□□□□ 0.96
CLN3-209ENST00000561689 SERGEFQ9UGK8 458 aa21.03■□□□□ 0.96
CLN3-209ENST00000561689 TSR3Q9UJK0 312 aaKnown RBP21.03■□□□□ 0.96
CLN3-209ENST00000561689 DHRS7Q9Y394 339 aa21.03■□□□□ 0.96
CLN3-209ENST00000561689 FADS3Q9Y5Q0 445 aa21.03■□□□□ 0.96
CLN3-209ENST00000561689 IGLV3-16A0A075B6K0 115 aa21.03■□□□□ 0.96
CLN3-209ENST00000561689 LZTS3O60299 673 aaPredicted RBP21.03■□□□□ 0.96
CLN3-209ENST00000561689 DRD1P21728 446 aa21.03■□□□□ 0.96
CLN3-209ENST00000561689 ABCE1P61221 599 aaKnown RBP21.03■□□□□ 0.96
CLN3-209ENST00000561689 TMEM52BQ4KMG9 183 aa21.03■□□□□ 0.96
CLN3-209ENST00000561689 ZNF648Q5T619 568 aaPredicted RBP21.03■□□□□ 0.96
CLN3-209ENST00000561689 CRLF3Q8IUI8 442 aa21.03■□□□□ 0.96
CLN3-209ENST00000561689 NRSN1Q8IZ57 195 aa21.03■□□□□ 0.96
CLN3-209ENST00000561689 PELI3Q8N2H9 469 aa21.03■□□□□ 0.96
CLN3-209ENST00000561689 TRIM55Q9BYV6 548 aa21.03■□□□□ 0.96
CLN3-209ENST00000561689 MKRN2Q9H000 416 aaKnown RBP21.03■□□□□ 0.96
CLN3-209ENST00000561689 SLC6A17Q9H1V8 727 aa21.03■□□□□ 0.96
CLN3-209ENST00000561689 KLHL14Q9P2G3 628 aa21.03■□□□□ 0.96
CLN3-209ENST00000561689 ARL2BPQ9Y2Y0 163 aa21.03■□□□□ 0.96
CLN3-209ENST00000561689 A0A1W2PP55 124 aa21.02■□□□□ 0.96
CLN3-209ENST00000561689 CDC7O00311 574 aa21.02■□□□□ 0.96
CLN3-209ENST00000561689 CD72P21854 359 aa21.02■□□□□ 0.96
CLN3-209ENST00000561689 COPAP53621 1224 aa21.02■□□□□ 0.96
CLN3-209ENST00000561689 IFT88Q13099 833 aa21.02■□□□□ 0.96
CLN3-209ENST00000561689 STARD3Q14849 445 aa21.02■□□□□ 0.96
CLN3-209ENST00000561689 KHDC1Q4VXA5 237 aaKnown RBP21.02■□□□□ 0.96
CLN3-209ENST00000561689 HDDC3Q8N4P3 179 aa21.02■□□□□ 0.96
CLN3-209ENST00000561689 DTX3LQ8TDB6 740 aa21.02■□□□□ 0.96
CLN3-209ENST00000561689 RAB7BQ96AH8 199 aa21.02■□□□□ 0.96
CLN3-209ENST00000561689 PHF21BQ96EK2 531 aa21.02■□□□□ 0.96
CLN3-209ENST00000561689 GUCD1Q96NT3 240 aa21.02■□□□□ 0.96
CLN3-209ENST00000561689 SORT1Q99523 831 aa21.02■□□□□ 0.96
CLN3-209ENST00000561689 TFB2MQ9H5Q4 396 aaKnown RBP21.02■□□□□ 0.96
CLN3-209ENST00000561689 NPEPPSL1A6NEC2 478 aa21.01■□□□□ 0.95
CLN3-209ENST00000561689 A8MT66 165 aa21.01■□□□□ 0.95
CLN3-209ENST00000561689 ADH1BP00325 375 aa21.01■□□□□ 0.95
CLN3-209ENST00000561689 HOXB2P14652 356 aa21.01■□□□□ 0.95
CLN3-209ENST00000561689 C5AR1P21730 350 aa21.01■□□□□ 0.95
CLN3-209ENST00000561689 CCR10P46092 362 aa21.01■□□□□ 0.95
CLN3-209ENST00000561689 ATP6V0D1P61421 351 aa21.01■□□□□ 0.95
CLN3-209ENST00000561689 RPS14P62263 151 aaKnown RBP21.01■□□□□ 0.95
CLN3-209ENST00000561689 TSNQ15631 228 aaKnown RBP21.01■□□□□ 0.95
CLN3-209ENST00000561689 AGBL4Q5VU57 503 aa21.01■□□□□ 0.95
CLN3-209ENST00000561689 ZNF776Q68DI1 518 aaPredicted RBP21.01■□□□□ 0.95
CLN3-209ENST00000561689 CCNYL1Q8N7R7 359 aa21.01■□□□□ 0.95
CLN3-209ENST00000561689 OR2T3Q8NH03 318 aa21.01■□□□□ 0.95
CLN3-209ENST00000561689 CXorf40AQ8TE69 158 aa21.01■□□□□ 0.95
CLN3-209ENST00000561689 INPP5DQ92835 1189 aa21.01■□□□□ 0.95
CLN3-209ENST00000561689 KIAA1191Q96A73 305 aa21.01■□□□□ 0.95
CLN3-209ENST00000561689 DCUN1D1Q96GG9 259 aa21.01■□□□□ 0.95
CLN3-209ENST00000561689 ATG2BQ96BY7 2078 aa21.01■□□□□ 0.95
CLN3-209ENST00000561689 A0A0G2JND7 137 aa21.01■□□□□ 0.95
CLN3-209ENST00000561689 A0A1W2PQF6 199 aa21.01■□□□□ 0.95
CLN3-209ENST00000561689 BTN3A1O00481 513 aa21.01■□□□□ 0.95
CLN3-209ENST00000561689 INPP4BO15327 924 aa21.01■□□□□ 0.95
CLN3-209ENST00000561689 H2AFYO75367 372 aaKnown RBP21.01■□□□□ 0.95
CLN3-209ENST00000561689 TGDSO95455 350 aa21.01■□□□□ 0.95
CLN3-209ENST00000561689 ATP1B2P14415 290 aaPredicted RBP21.01■□□□□ 0.95
CLN3-209ENST00000561689 COL9A1P20849 921 aa21.01■□□□□ 0.95
CLN3-209ENST00000561689 TAS2R38P59533 333 aa21.01■□□□□ 0.95
CLN3-209ENST00000561689 CYP2U1Q7Z449 544 aa21.01■□□□□ 0.95
CLN3-209ENST00000561689 KCNV2Q8TDN2 545 aa21.01■□□□□ 0.95
CLN3-209ENST00000561689 BTN2A2Q8WVV5 523 aa21.01■□□□□ 0.95
CLN3-209ENST00000561689 NUS1Q96E22 293 aa21.01■□□□□ 0.95
CLN3-209ENST00000561689 RMDN2Q96LZ7 410 aa21.01■□□□□ 0.95
CLN3-209ENST00000561689 DNAJC16Q9Y2G8 782 aa21.01■□□□□ 0.95
CLN3-209ENST00000561689 K7ESM1 405 aa21■□□□□ 0.95
CLN3-209ENST00000561689 RNASEH2AO75792 299 aaKnown RBP21■□□□□ 0.95
CLN3-209ENST00000561689 IPO13O94829 963 aaKnown RBP21■□□□□ 0.95
CLN3-209ENST00000561689 PTCRAQ6ISU1 281 aaPredicted RBP21■□□□□ 0.95
CLN3-209ENST00000561689 C6orf89Q6UWU4 347 aa21■□□□□ 0.95
CLN3-209ENST00000561689 TRIM67Q6ZTA4 783 aa21■□□□□ 0.95
CLN3-209ENST00000561689 RHEBL1Q8TAI7 183 aa21■□□□□ 0.95
CLN3-209ENST00000561689 STAG3L4Q8TBR4 150 aa21■□□□□ 0.95
CLN3-209ENST00000561689 PPP4R1Q8TF05 950 aa21■□□□□ 0.95
CLN3-209ENST00000561689 C10orf82Q8WW14 230 aa21■□□□□ 0.95
CLN3-209ENST00000561689 GLYATL1Q969I3 302 aa21■□□□□ 0.95
CLN3-209ENST00000561689 ATOH8Q96SQ7 321 aa21■□□□□ 0.95
CLN3-209ENST00000561689 SHISA7A6NL88 538 aa20.99■□□□□ 0.95
CLN3-209ENST00000561689 TMEM114B3SHH9 223 aa20.99■□□□□ 0.95
CLN3-209ENST00000561689 UBXN8O00124 270 aa20.99■□□□□ 0.95
CLN3-209ENST00000561689 MYO1CO00159 1063 aa20.99■□□□□ 0.95
CLN3-209ENST00000561689 HGSO14964 777 aaPredicted RBP20.99■□□□□ 0.95
CLN3-209ENST00000561689 HSPA4LO95757 839 aa20.99■□□□□ 0.95
CLN3-209ENST00000561689 PRKAA2P54646 552 aa20.99■□□□□ 0.95
CLN3-209ENST00000561689 TMPRSS6Q8IU80 811 aa20.99■□□□□ 0.95
CLN3-209ENST00000561689 ZBTB2Q8N680 514 aa20.99■□□□□ 0.95
CLN3-209ENST00000561689 DDHD1Q8NEL9 900 aa20.99■□□□□ 0.95
CLN3-209ENST00000561689 GANCQ8TET4 914 aa20.99■□□□□ 0.95
CLN3-209ENST00000561689 TMEM237Q96Q45 408 aa20.99■□□□□ 0.95
CLN3-209ENST00000561689 SPATS2LQ9NUQ6 558 aaKnown RBP20.99■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms