RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 IQCJ-SCHIP1C9J366 451 aaPredicted RBP10.07□□□□□ -0.8
LDLR-214ENST00000560628 H7C0C1 242 aa10.07□□□□□ -0.8
LDLR-214ENST00000560628 PYCARD-AS1I3L0S3 204 aa10.07□□□□□ -0.8
LDLR-214ENST00000560628 MTSS1O43312 755 aa10.07□□□□□ -0.8
LDLR-214ENST00000560628 VEGFDO43915 354 aa10.07□□□□□ -0.8
LDLR-214ENST00000560628 LCA5LO95447 670 aa10.07□□□□□ -0.8
LDLR-214ENST00000560628 AGTP01019 485 aa10.07□□□□□ -0.8
LDLR-214ENST00000560628 VIPP01282 170 aa10.07□□□□□ -0.8
LDLR-214ENST00000560628 AMD1P17707 334 aa10.07□□□□□ -0.8
LDLR-214ENST00000560628 CA5AP35218 305 aa10.07□□□□□ -0.8
LDLR-214ENST00000560628 SLC19A1P41440 591 aa10.07□□□□□ -0.8
LDLR-214ENST00000560628 TSPAN7P41732 249 aa10.07□□□□□ -0.8
LDLR-214ENST00000560628 TNNT3P45378 269 aaPredicted RBP10.07□□□□□ -0.8
LDLR-214ENST00000560628 ATP5OP48047 213 aa10.07□□□□□ -0.8
LDLR-214ENST00000560628 ATP1A2P50993 1020 aa10.07□□□□□ -0.8
LDLR-214ENST00000560628 CLCNKAP51800 687 aa10.07□□□□□ -0.8
LDLR-214ENST00000560628 DRG2P55039 364 aaKnown RBP10.07□□□□□ -0.8
LDLR-214ENST00000560628 UBE2IP63279 158 aaKnown RBP10.07□□□□□ -0.8
LDLR-214ENST00000560628 MC2RQ01718 297 aa10.07□□□□□ -0.8
LDLR-214ENST00000560628 TMEM115Q12893 351 aaPredicted RBP10.07□□□□□ -0.8
LDLR-214ENST00000560628 PTPRCAPQ14761 206 aa10.07□□□□□ -0.8
LDLR-214ENST00000560628 TBR1Q16650 682 aa10.07□□□□□ -0.8
LDLR-214ENST00000560628 CCDC181Q5TID7 509 aa10.07□□□□□ -0.8
LDLR-214ENST00000560628 PDPK2PQ6A1A2 396 aa10.07□□□□□ -0.8
LDLR-214ENST00000560628 SARM1Q6SZW1 724 aa10.07□□□□□ -0.8
LDLR-214ENST00000560628 FAM151BQ6UXP7 276 aa10.07□□□□□ -0.8
LDLR-214ENST00000560628 DAAM2Q86T65 1068 aa10.07□□□□□ -0.8
LDLR-214ENST00000560628 TRIM48Q8IWZ4 208 aa10.07□□□□□ -0.8
LDLR-214ENST00000560628 CCDC170Q8IYT3 715 aa10.07□□□□□ -0.8
LDLR-214ENST00000560628 CACNA2D3Q8IZS8 1091 aa10.07□□□□□ -0.8
LDLR-214ENST00000560628 IL22RA1Q8N6P7 574 aa10.07□□□□□ -0.8
LDLR-214ENST00000560628 BMPERQ8N8U9 685 aa10.07□□□□□ -0.8
LDLR-214ENST00000560628 BLOC1S5Q8TDH9 187 aa10.07□□□□□ -0.8
LDLR-214ENST00000560628 HTR3CQ8WXA8 447 aa10.07□□□□□ -0.8
LDLR-214ENST00000560628 FCRL5Q96RD9 977 aa10.07□□□□□ -0.8
LDLR-214ENST00000560628 SRPK1Q96SB4 655 aaKnown RBP10.07□□□□□ -0.8
LDLR-214ENST00000560628 DDA1Q9BW61 102 aa10.07□□□□□ -0.8
LDLR-214ENST00000560628 ASPSCR1Q9BZE9 553 aa10.07□□□□□ -0.8
LDLR-214ENST00000560628 APMAPQ9HDC9 416 aa10.07□□□□□ -0.8
LDLR-214ENST00000560628 NFKBIL1Q9UBC1 381 aaPredicted RBP10.07□□□□□ -0.8
LDLR-214ENST00000560628 SLC30A1Q9Y6M5 507 aa10.07□□□□□ -0.8
LDLR-214ENST00000560628 DUSP10Q9Y6W6 482 aa10.07□□□□□ -0.8
LDLR-214ENST00000560628 RCCD1A6NED2 376 aa10.06□□□□□ -0.8
LDLR-214ENST00000560628 SOWAHDA6NJG2 315 aa10.06□□□□□ -0.8
LDLR-214ENST00000560628 OR52A4PA6NMU1 304 aa10.06□□□□□ -0.8
LDLR-214ENST00000560628 HACD1B0YJ81 288 aa10.06□□□□□ -0.8
LDLR-214ENST00000560628 GPR89AB7ZAQ6 455 aa10.06□□□□□ -0.8
LDLR-214ENST00000560628 B8ZZF3 427 aa10.06□□□□□ -0.8
LDLR-214ENST00000560628 GPR39O43194 453 aa10.06□□□□□ -0.8
LDLR-214ENST00000560628 RAD1O60671 282 aa10.06□□□□□ -0.8
LDLR-214ENST00000560628 EPOP01588 193 aa10.06□□□□□ -0.8
LDLR-214ENST00000560628 FAM87AP0C7U9 286 aa10.06□□□□□ -0.8
LDLR-214ENST00000560628 GPR89BP0CG08 455 aa10.06□□□□□ -0.8
LDLR-214ENST00000560628 LIFP15018 202 aa10.06□□□□□ -0.8
LDLR-214ENST00000560628 BRAFP15056 766 aa10.06□□□□□ -0.8
LDLR-214ENST00000560628 XRCC1P18887 633 aaPredicted RBP10.06□□□□□ -0.8
LDLR-214ENST00000560628 RBL1P28749 1068 aa10.06□□□□□ -0.8
LDLR-214ENST00000560628 CYLC1P35663 651 aaPredicted RBP10.06□□□□□ -0.8
LDLR-214ENST00000560628 HMGCLP35914 325 aa10.06□□□□□ -0.8
LDLR-214ENST00000560628 EPHA4P54764 986 aa10.06□□□□□ -0.8
LDLR-214ENST00000560628 NAP1L1P55209 391 aaKnown RBP10.06□□□□□ -0.8
LDLR-214ENST00000560628 GFERP55789 205 aa10.06□□□□□ -0.8
LDLR-214ENST00000560628 NFATC3Q12968 1075 aa10.06□□□□□ -0.8
LDLR-214ENST00000560628 GTF2H3Q13889 308 aa10.06□□□□□ -0.8
LDLR-214ENST00000560628 SLC1A5Q15758 541 aa10.06□□□□□ -0.8
LDLR-214ENST00000560628 PPP2R5EQ16537 467 aa10.06□□□□□ -0.8
LDLR-214ENST00000560628 TMEM26Q6ZUK4 368 aa10.06□□□□□ -0.8
LDLR-214ENST00000560628 PLXDC1Q8IUK5 500 aa10.06□□□□□ -0.8
LDLR-214ENST00000560628 TRAPPC5Q8IUR0 188 aa10.06□□□□□ -0.8
LDLR-214ENST00000560628 RTP4Q96DX8 246 aa10.06□□□□□ -0.8
LDLR-214ENST00000560628 RBM41Q96IZ5 413 aaKnown RBP10.06□□□□□ -0.8
LDLR-214ENST00000560628 TTC25Q96NG3 672 aa10.06□□□□□ -0.8
LDLR-214ENST00000560628 QKIQ96PU8 341 aaKnown RBP eCLIP10.06□□□□□ -0.8
LDLR-214ENST00000560628 VAT1Q99536 393 aa10.06□□□□□ -0.8
LDLR-214ENST00000560628 FAM118BQ9BPY3 351 aa10.06□□□□□ -0.8
LDLR-214ENST00000560628 TIMM29Q9BSF4 260 aa10.06□□□□□ -0.8
LDLR-214ENST00000560628 FICDQ9BVA6 458 aa10.06□□□□□ -0.8
LDLR-214ENST00000560628 TRABDQ9H4I3 376 aa10.06□□□□□ -0.8
LDLR-214ENST00000560628 OGFRQ9NZT2 677 aa10.06□□□□□ -0.8
LDLR-214ENST00000560628 IL17CQ9P0M4 197 aa10.06□□□□□ -0.8
LDLR-214ENST00000560628 RSPH14Q9UHP6 348 aa10.06□□□□□ -0.8
LDLR-214ENST00000560628 TRHDEQ9UKU6 1024 aa10.06□□□□□ -0.8
LDLR-214ENST00000560628 WDR37Q9Y2I8 494 aa10.06□□□□□ -0.8
LDLR-214ENST00000560628 SBDSQ9Y3A5 250 aaKnown RBP eCLIP10.06□□□□□ -0.8
LDLR-214ENST00000560628 EPN1Q9Y6I3 576 aaPredicted RBP10.06□□□□□ -0.8
LDLR-214ENST00000560628 ZFC3H1O60293 1989 aaKnown RBP10.05□□□□□ -0.8
LDLR-214ENST00000560628 MACROD2A1Z1Q3 448 aa10.05□□□□□ -0.8
LDLR-214ENST00000560628 LILRA5A6NI73 299 aa10.05□□□□□ -0.8
LDLR-214ENST00000560628 J3QKU1 62 aa10.05□□□□□ -0.8
LDLR-214ENST00000560628 POP7O75817 140 aaKnown RBP10.05□□□□□ -0.8
LDLR-214ENST00000560628 UBXN7O94888 489 aa10.05□□□□□ -0.8
LDLR-214ENST00000560628 ITGB2P05107 769 aa10.05□□□□□ -0.8
LDLR-214ENST00000560628 IDSP22304 550 aa10.05□□□□□ -0.8
LDLR-214ENST00000560628 SPAM1P38567 509 aa10.05□□□□□ -0.8
LDLR-214ENST00000560628 LEPRP48357 1165 aaKnown RBP10.05□□□□□ -0.8
LDLR-214ENST00000560628 SEPHS1P49903 392 aa10.05□□□□□ -0.8
LDLR-214ENST00000560628 ZNF75DP51815 510 aa10.05□□□□□ -0.8
LDLR-214ENST00000560628 CTSCP53634 463 aa10.05□□□□□ -0.8
LDLR-214ENST00000560628 RAB15P59190 212 aa10.05□□□□□ -0.8
LDLR-214ENST00000560628 MPP3Q13368 585 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms