RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 UGT1A8Q9HAW9 530 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 ZDHHC18Q9NUE0 388 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 ATXN10Q9UBB4 475 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 SUFUQ9UMX1 484 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 GPR34Q9UPC5 381 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 TMEM98Q9Y2Y6 226 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 TEX264Q9Y6I9 313 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 OAS3Q9Y6K5 1087 aaKnown RBP9.96□□□□□ -0.82
USP3-216ENST00000559873 CSNK1G3Q9Y6M4 447 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 FAM169AQ9Y6X4 670 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 CABIN1Q9Y6J0 2220 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 VPS13AQ96RL7 3174 aa9.96□□□□□ -0.82
USP3-216ENST00000559873 TP53BP1Q12888 1972 aaPredicted RBP9.95□□□□□ -0.82
USP3-216ENST00000559873 ZCWPW2A0A1B0GU75 182 aa9.95□□□□□ -0.82
USP3-216ENST00000559873 LOC105378220A0A1B0GUY1 285 aaPredicted RBP9.95□□□□□ -0.82
USP3-216ENST00000559873 OR51F1A6NGY5 319 aa9.95□□□□□ -0.82
USP3-216ENST00000559873 C4orf47A7E2U8 309 aa9.95□□□□□ -0.82
USP3-216ENST00000559873 BHMG1C9JSJ3 638 aaPredicted RBP9.95□□□□□ -0.82
USP3-216ENST00000559873 CHUKO15111 745 aa9.95□□□□□ -0.82
USP3-216ENST00000559873 KMOO15229 486 aa9.95□□□□□ -0.82
USP3-216ENST00000559873 SDC3O75056 442 aa9.95□□□□□ -0.82
USP3-216ENST00000559873 MTX2O75431 263 aa9.95□□□□□ -0.82
USP3-216ENST00000559873 NDUFS3O75489 264 aa9.95□□□□□ -0.82
USP3-216ENST00000559873 BANF1O75531 89 aa9.95□□□□□ -0.82
USP3-216ENST00000559873 ANXA6P08133 673 aa9.95□□□□□ -0.82
USP3-216ENST00000559873 OR56A5P0C7T3 313 aa9.95□□□□□ -0.82
USP3-216ENST00000559873 SLC2A4P14672 509 aa9.95□□□□□ -0.82
USP3-216ENST00000559873 ZNF8P17098 575 aaPredicted RBP9.95□□□□□ -0.82
USP3-216ENST00000559873 MCM3P25205 808 aa9.95□□□□□ -0.82
USP3-216ENST00000559873 STX2P32856 288 aa9.95□□□□□ -0.82
USP3-216ENST00000559873 PHBP35232 272 aa9.95□□□□□ -0.82
USP3-216ENST00000559873 POLD2P49005 469 aa9.95□□□□□ -0.82
USP3-216ENST00000559873 ILF2Q12905 390 aaKnown RBP9.95□□□□□ -0.82
USP3-216ENST00000559873 FRG1Q14331 258 aaKnown RBP9.95□□□□□ -0.82
USP3-216ENST00000559873 SLMAPQ14BN4 828 aa9.95□□□□□ -0.82
USP3-216ENST00000559873 DBN1Q16643 649 aa9.95□□□□□ -0.82
USP3-216ENST00000559873 UAP1L1Q3KQV9 507 aa9.95□□□□□ -0.82
USP3-216ENST00000559873 BCL7AQ4VC05 210 aa9.95□□□□□ -0.82
USP3-216ENST00000559873 PYCR3Q53H96 274 aa9.95□□□□□ -0.82
USP3-216ENST00000559873 STPG1Q5TH74 334 aa9.95□□□□□ -0.82
USP3-216ENST00000559873 STEAP4Q687X5 459 aa9.95□□□□□ -0.82
USP3-216ENST00000559873 ZNF470Q6ECI4 717 aa9.95□□□□□ -0.82
USP3-216ENST00000559873 NEPROQ6NW34 567 aa9.95□□□□□ -0.82
USP3-216ENST00000559873 ZNF449Q6P9G9 518 aa9.95□□□□□ -0.82
USP3-216ENST00000559873 UNC5AQ6ZN44 842 aa9.95□□□□□ -0.82
USP3-216ENST00000559873 KIAA0408Q6ZU52 694 aa9.95□□□□□ -0.82
USP3-216ENST00000559873 ANKMY2Q8IV38 441 aa9.95□□□□□ -0.82
USP3-216ENST00000559873 KIAA2013Q8IYS2 634 aa9.95□□□□□ -0.82
USP3-216ENST00000559873 EIF1ADQ8N9N8 165 aaKnown RBP9.95□□□□□ -0.82
USP3-216ENST00000559873 GPR150Q8NGU9 434 aa9.95□□□□□ -0.82
USP3-216ENST00000559873 LMX1AQ8TE12 382 aa9.95□□□□□ -0.82
USP3-216ENST00000559873 SAP25Q8TEE9 199 aa9.95□□□□□ -0.82
USP3-216ENST00000559873 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP9.95□□□□□ -0.82
USP3-216ENST00000559873 UBXN4Q92575 508 aa9.95□□□□□ -0.82
USP3-216ENST00000559873 GLMNQ92990 594 aa9.95□□□□□ -0.82
USP3-216ENST00000559873 CERS2Q96G23 380 aa9.95□□□□□ -0.82
USP3-216ENST00000559873 PWWP2AQ96N64 755 aa9.95□□□□□ -0.82
USP3-216ENST00000559873 TIMM29Q9BSF4 260 aa9.95□□□□□ -0.82
USP3-216ENST00000559873 CLPBQ9H078 707 aa9.95□□□□□ -0.82
USP3-216ENST00000559873 FAM96AQ9H5X1 160 aa9.95□□□□□ -0.82
USP3-216ENST00000559873 ARFGAP3Q9NP61 516 aa9.95□□□□□ -0.82
USP3-216ENST00000559873 MRPL40Q9NQ50 206 aaKnown RBP9.95□□□□□ -0.82
USP3-216ENST00000559873 PPANQ9NQ55 473 aaKnown RBP9.95□□□□□ -0.82
USP3-216ENST00000559873 INTS10Q9NVR2 710 aaKnown RBP9.95□□□□□ -0.82
USP3-216ENST00000559873 NSMCE4AQ9NXX6 385 aa9.95□□□□□ -0.82
USP3-216ENST00000559873 NCKIPSDQ9NZQ3 722 aa9.95□□□□□ -0.82
USP3-216ENST00000559873 ZFATQ9P243 1243 aa9.95□□□□□ -0.82
USP3-216ENST00000559873 ZNHIT2Q9UHR6 403 aa9.95□□□□□ -0.82
USP3-216ENST00000559873 GNPTGQ9UJJ9 305 aa9.95□□□□□ -0.82
USP3-216ENST00000559873 TMPRSS11EQ9UL52 423 aa9.95□□□□□ -0.82
USP3-216ENST00000559873 GPSM3Q9Y4H4 160 aa9.95□□□□□ -0.82
USP3-216ENST00000559873 DNMT3AQ9Y6K1 912 aaPredicted RBP9.95□□□□□ -0.82
USP3-216ENST00000559873 CEP250Q9BV73 2442 aa9.95□□□□□ -0.82
USP3-216ENST00000559873 IGLV3-16A0A075B6K0 115 aa9.94□□□□□ -0.82
USP3-216ENST00000559873 OR2AG2A6NM03 316 aa9.94□□□□□ -0.82
USP3-216ENST00000559873 LMO7DNF2Z398 122 aa9.94□□□□□ -0.82
USP3-216ENST00000559873 PRMT5O14744 637 aaPredicted RBP9.94□□□□□ -0.82
USP3-216ENST00000559873 TPP1O14773 563 aa9.94□□□□□ -0.82
USP3-216ENST00000559873 DNAJC6O75061 913 aa9.94□□□□□ -0.82
USP3-216ENST00000559873 FTH1P02794 183 aa9.94□□□□□ -0.82
USP3-216ENST00000559873 ACP5P13686 325 aa9.94□□□□□ -0.82
USP3-216ENST00000559873 ATP1B2P14415 290 aaPredicted RBP9.94□□□□□ -0.82
USP3-216ENST00000559873 RPS3P23396 243 aaKnown RBP eCLIP9.94□□□□□ -0.82
USP3-216ENST00000559873 DGKAP23743 735 aa9.94□□□□□ -0.82
USP3-216ENST00000559873 ARNTP27540 789 aa9.94□□□□□ -0.82
USP3-216ENST00000559873 TNFRSF8P28908 595 aa9.94□□□□□ -0.82
USP3-216ENST00000559873 ACTR1BP42025 376 aa9.94□□□□□ -0.82
USP3-216ENST00000559873 MAGEA4P43358 317 aa9.94□□□□□ -0.82
USP3-216ENST00000559873 ARCN1P48444 511 aaKnown RBP9.94□□□□□ -0.82
USP3-216ENST00000559873 PRLHRP49683 370 aa9.94□□□□□ -0.82
USP3-216ENST00000559873 ACTR1AP61163 376 aa9.94□□□□□ -0.82
USP3-216ENST00000559873 IL9RQ01113 521 aa9.94□□□□□ -0.82
USP3-216ENST00000559873 TYSND1Q2T9J0 566 aa9.94□□□□□ -0.82
USP3-216ENST00000559873 HP1BP3Q5SSJ5 553 aaPredicted RBP9.94□□□□□ -0.82
USP3-216ENST00000559873 PRAMEF14Q5SWL7 426 aa9.94□□□□□ -0.82
USP3-216ENST00000559873 LVRNQ6Q4G3 990 aa9.94□□□□□ -0.82
USP3-216ENST00000559873 TMEM220Q6QAJ8 160 aa9.94□□□□□ -0.82
USP3-216ENST00000559873 CRTC3Q6UUV7 619 aa9.94□□□□□ -0.82
USP3-216ENST00000559873 CHST15Q7LFX5 561 aaPredicted RBP9.94□□□□□ -0.82
USP3-216ENST00000559873 TAF8Q7Z7C8 310 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms