RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 PTPN18Q99952 460 aa12.23□□□□□ -0.45
LDLR-205ENST00000557933 SEMA3CQ99985 751 aa12.23□□□□□ -0.45
LDLR-205ENST00000557933 IKZF5Q9H5V7 419 aa12.23□□□□□ -0.45
LDLR-205ENST00000557933 MARCH7Q9H992 704 aa12.23□□□□□ -0.45
LDLR-205ENST00000557933 ABI2Q9NYB9 513 aaPredicted RBP12.23□□□□□ -0.45
LDLR-205ENST00000557933 MICAL3Q7RTP6 2002 aa12.23□□□□□ -0.45
LDLR-205ENST00000557933 A0A1W2PQH9 124 aa12.23□□□□□ -0.45
LDLR-205ENST00000557933 KRBA1A5PL33 1030 aa12.23□□□□□ -0.45
LDLR-205ENST00000557933 HS6ST1O60243 411 aa12.23□□□□□ -0.45
LDLR-205ENST00000557933 NIPSNAP2O75323 286 aa12.23□□□□□ -0.45
LDLR-205ENST00000557933 ECI2O75521 394 aa12.23□□□□□ -0.45
LDLR-205ENST00000557933 HTR1AP08908 422 aa12.23□□□□□ -0.45
LDLR-205ENST00000557933 INHBBP09529 407 aa12.23□□□□□ -0.45
LDLR-205ENST00000557933 MAGEA8P43361 318 aa12.23□□□□□ -0.45
LDLR-205ENST00000557933 LEPRP48357 1165 aaKnown RBP12.23□□□□□ -0.45
LDLR-205ENST00000557933 ARSFP54793 590 aa12.23□□□□□ -0.45
LDLR-205ENST00000557933 ARPP19P56211 112 aa12.23□□□□□ -0.45
LDLR-205ENST00000557933 SIM2Q14190 667 aaPredicted RBP12.23□□□□□ -0.45
LDLR-205ENST00000557933 GRB14Q14449 540 aa12.23□□□□□ -0.45
LDLR-205ENST00000557933 ZNF792Q3KQV3 632 aa12.23□□□□□ -0.45
LDLR-205ENST00000557933 LCN8Q6JVE9 175 aa12.23□□□□□ -0.45
LDLR-205ENST00000557933 TXNDC11Q6PKC3 985 aa12.23□□□□□ -0.45
LDLR-205ENST00000557933 DHRS4L2Q6PKH6 230 aa12.23□□□□□ -0.45
LDLR-205ENST00000557933 PGBD5Q8N414 524 aa12.23□□□□□ -0.45
LDLR-205ENST00000557933 SIDT2Q8NBJ9 832 aaKnown RBP12.23□□□□□ -0.45
LDLR-205ENST00000557933 ABHD11Q8NFV4 315 aa12.23□□□□□ -0.45
LDLR-205ENST00000557933 FAR2Q96K12 515 aa12.23□□□□□ -0.45
LDLR-205ENST00000557933 NSMCE2Q96MF7 247 aa12.23□□□□□ -0.45
LDLR-205ENST00000557933 SLC9A7Q96T83 725 aa12.23□□□□□ -0.45
LDLR-205ENST00000557933 GPR21Q99679 349 aa12.23□□□□□ -0.45
LDLR-205ENST00000557933 THUMPD3Q9BV44 507 aaKnown RBP12.23□□□□□ -0.45
LDLR-205ENST00000557933 GPBP1L1Q9HC44 474 aaPredicted RBP12.23□□□□□ -0.45
LDLR-205ENST00000557933 TSC22D4Q9Y3Q8 395 aa12.23□□□□□ -0.45
LDLR-205ENST00000557933 TCRBV5S2A0A599 114 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 TMEM221A6NGB7 291 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 DFNA5O60443 496 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 ZNF37AP17032 561 aaPredicted RBP12.22□□□□□ -0.45
LDLR-205ENST00000557933 FMO3P31513 532 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 GRK4P32298 578 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 CLCN5P51795 746 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 EFEMP1Q12805 493 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 SLC13A2Q13183 592 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 SMN1Q16637 294 aaKnown RBP12.22□□□□□ -0.45
LDLR-205ENST00000557933 DPY19L1Q2PZI1 675 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 PAGE2BQ5JRK9 111 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 PIK3R6Q5UE93 754 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 MARC1Q5VT66 337 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 RAP1GAP2Q684P5 730 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 SLC22A9Q8IVM8 553 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 EFHBQ8N7U6 833 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 OR10A6Q8NH74 314 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 LZICQ8WZA0 190 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 RPL3LQ92901 407 aaKnown RBP12.22□□□□□ -0.45
LDLR-205ENST00000557933 TOP1MTQ969P6 601 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 NCLNQ969V3 563 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 ROPN1LQ96C74 230 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 MTFMTQ96DP5 389 aaKnown RBP12.22□□□□□ -0.45
LDLR-205ENST00000557933 RTP3Q9BQQ7 232 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 SDR39U1Q9NRG7 319 aaPredicted RBP12.22□□□□□ -0.45
LDLR-205ENST00000557933 GID8Q9NWU2 228 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 ABCD2Q9UBJ2 740 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 LIMD1Q9UGP4 676 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 FBXO10Q9UK96 956 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 CASP8AP2Q9UKL3 1982 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 AQP12BA6NM10 295 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 UPK3BL1B0FP48 263 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 UPK3BL2E5RIL1 263 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 GABRDO14764 452 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 CD3EAPO15446 510 aaKnown RBP12.22□□□□□ -0.45
LDLR-205ENST00000557933 IRAK2O43187 625 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 TLR5O60602 858 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 BCAS1O75363 584 aaPredicted RBP12.22□□□□□ -0.45
LDLR-205ENST00000557933 E2F6O75461 281 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 G6PDP11413 515 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 PNPLA4P41247 253 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 GDF5P43026 501 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 ZNF362Q5T0B9 420 aaPredicted RBP12.22□□□□□ -0.45
LDLR-205ENST00000557933 CCNYL2Q5T2Q4 361 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 KDELC1Q6UW63 502 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 ZNF598Q86UK7 904 aaKnown RBP12.22□□□□□ -0.45
LDLR-205ENST00000557933 ANKRD46Q86W74 232 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 AQP12AQ8IXF9 295 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 TTC9BQ8N6N2 239 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 TOP6BLQ8N6T0 577 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 ITFG1Q8TB96 612 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 HTRA1Q92743 480 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 UBE2FQ969M7 185 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 SMARCD1Q96GM5 515 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 C17orf80Q9BSJ5 609 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 FEM1AQ9BSK4 669 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 ZBED2Q9BTP6 218 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 HGH1Q9BTY7 390 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 TRIM15Q9C019 465 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 AMBRA1Q9C0C7 1298 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 PAK1IP1Q9NWT1 392 aaPredicted RBP12.22□□□□□ -0.45
LDLR-205ENST00000557933 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.22□□□□□ -0.45
LDLR-205ENST00000557933 PCDHGA11Q9Y5H2 935 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 GPR45Q9Y5Y3 372 aa12.22□□□□□ -0.45
LDLR-205ENST00000557933 TMEM88BA6NKF7 163 aa12.21□□□□□ -0.45
LDLR-205ENST00000557933 CBFA2T3O75081 653 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms