RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 PPATQ06203 517 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 HSPB3Q12988 150 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 GRIK2Q13002 908 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 MEP1AQ16819 746 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 GLIPR1L2Q4G1C9 344 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 DCAF6Q58WW2 860 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 DNAJC21Q5F1R6 531 aaKnown RBP3.11□□□□□ -1.91
TRAV28-201ENST00000557548 C6orf136Q5SQH8 315 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 MEX3CQ5U5Q3 659 aaKnown RBP3.11□□□□□ -1.91
TRAV28-201ENST00000557548 SFMBT2Q5VUG0 894 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 FAM91A1Q658Y4 838 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 MOXD1Q6UVY6 613 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 B3GNT6Q6ZMB0 384 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 Q6ZPA2 131 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 DET1Q7L5Y6 550 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 ZNF627Q7L945 461 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 NUP54Q7Z3B4 507 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 UBE2Q1Q7Z7E8 422 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 ABI3BPQ7Z7G0 1075 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 ZNF575Q86XF7 245 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 CAMK1DQ8IU85 385 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 DSELQ8IZU8 1212 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 ZNF619Q8N2I2 560 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 TEX45Q8NA69 505 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 NHLRC2Q8NBF2 726 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 TBC1D16Q8TBP0 767 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 GRAPLQ8TC17 118 aaPredicted RBP3.11□□□□□ -1.91
TRAV28-201ENST00000557548 TRAF3IP1Q8TDR0 691 aaPredicted RBP3.11□□□□□ -1.91
TRAV28-201ENST00000557548 SLC35F5Q8WV83 523 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 SEPT1Q8WYJ6 367 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 ROBO4Q8WZ75 1007 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 LARP4BQ92615 738 aaKnown RBP3.11□□□□□ -1.91
TRAV28-201ENST00000557548 EXT2Q93063 718 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 NEK1Q96PY6 1258 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 GFM1Q96RP9 751 aaKnown RBP3.11□□□□□ -1.91
TRAV28-201ENST00000557548 CRAMP1Q96RY5 1269 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 SMC6Q96SB8 1091 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 TSPAN18Q96SJ8 248 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 ATP6V0BQ99437 205 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 WDR77Q9BQA1 342 aaPredicted RBP3.11□□□□□ -1.91
TRAV28-201ENST00000557548 HAUS8Q9BT25 410 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 KATNB1Q9BVA0 655 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 UTP14AQ9BVJ6 771 aaKnown RBP3.11□□□□□ -1.91
TRAV28-201ENST00000557548 CACNG6Q9BXT2 260 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 XPO4Q9C0E2 1151 aaKnown RBP3.11□□□□□ -1.91
TRAV28-201ENST00000557548 FZD8Q9H461 694 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 THAP9Q9H5L6 903 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 MAGIXQ9H6Y5 334 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 MAP6D1Q9H9H5 199 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 TBC1D17Q9HA65 648 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 IL1RAPL2Q9NP60 686 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 MMP25Q9NPA2 562 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 MID1IP1Q9NPA3 183 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 SIRT3Q9NTG7 399 aaPredicted RBP3.11□□□□□ -1.91
TRAV28-201ENST00000557548 TMEM51Q9NW97 253 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 CNIH4Q9P003 139 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 ARPP21Q9UBL0 812 aaPredicted RBP3.11□□□□□ -1.91
TRAV28-201ENST00000557548 CDH7Q9ULB5 785 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 ACSL5Q9ULC5 683 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 PA2G4Q9UQ80 394 aaKnown RBP3.11□□□□□ -1.91
TRAV28-201ENST00000557548 NFS1Q9Y697 457 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 SQORQ9Y6N5 450 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 WDR17Q8IZU2 1322 aa3.11□□□□□ -1.91
TRAV28-201ENST00000557548 KCNU1A8MYU2 1149 aa3.1□□□□□ -1.91
TRAV28-201ENST00000557548 B4DGG1 531 aa3.1□□□□□ -1.91
TRAV28-201ENST00000557548 NPIPB8E9PQR5 432 aa3.1□□□□□ -1.91
TRAV28-201ENST00000557548 SLC16A5O15375 505 aa3.1□□□□□ -1.91
TRAV28-201ENST00000557548 ST8SIA3O43173 380 aa3.1□□□□□ -1.91
TRAV28-201ENST00000557548 NDUFS4O43181 175 aa3.1□□□□□ -1.91
TRAV28-201ENST00000557548 ZBTB14O43829 449 aa3.1□□□□□ -1.91
TRAV28-201ENST00000557548 ZNF217O75362 1048 aa3.1□□□□□ -1.91
TRAV28-201ENST00000557548 MOSPD3O75425 235 aa3.1□□□□□ -1.91
TRAV28-201ENST00000557548 TNFRSF8P28908 595 aa3.1□□□□□ -1.91
TRAV28-201ENST00000557548 ME1P48163 572 aa3.1□□□□□ -1.91
TRAV28-201ENST00000557548 ZNF75DP51815 510 aa3.1□□□□□ -1.91
TRAV28-201ENST00000557548 RPS13P62277 151 aaKnown RBP3.1□□□□□ -1.91
TRAV28-201ENST00000557548 SNRPEP62304 92 aaKnown RBP3.1□□□□□ -1.91
TRAV28-201ENST00000557548 CSNK2A1P68400 391 aaPredicted RBP3.1□□□□□ -1.91
TRAV28-201ENST00000557548 RPA4Q13156 261 aa3.1□□□□□ -1.91
TRAV28-201ENST00000557548 MAD2L1Q13257 205 aaPredicted RBP3.1□□□□□ -1.91
TRAV28-201ENST00000557548 MVPQ14764 893 aaKnown RBP3.1□□□□□ -1.91
TRAV28-201ENST00000557548 PPA1Q15181 289 aa3.1□□□□□ -1.91
TRAV28-201ENST00000557548 TAZQ16635 292 aa3.1□□□□□ -1.91
TRAV28-201ENST00000557548 PARP10Q53GL7 1025 aa3.1□□□□□ -1.91
TRAV28-201ENST00000557548 CCDC158Q5M9N0 1113 aa3.1□□□□□ -1.91
TRAV28-201ENST00000557548 RNASEH2BQ5TBB1 312 aaKnown RBP3.1□□□□□ -1.91
TRAV28-201ENST00000557548 SHEQ5VZ18 495 aa3.1□□□□□ -1.91
TRAV28-201ENST00000557548 PAPD7Q5XG87 772 aaKnown RBP3.1□□□□□ -1.91
TRAV28-201ENST00000557548 ALS2CLQ60I27 953 aa3.1□□□□□ -1.91
TRAV28-201ENST00000557548 FCRLBQ6BAA4 426 aa3.1□□□□□ -1.91
TRAV28-201ENST00000557548 MIS18BP1Q6P0N0 1132 aa3.1□□□□□ -1.91
TRAV28-201ENST00000557548 DUS1LQ6P1R4 473 aaKnown RBP3.1□□□□□ -1.91
TRAV28-201ENST00000557548 FIGLAQ6QHK4 219 aa3.1□□□□□ -1.91
TRAV28-201ENST00000557548 TMEM270Q6UE05 265 aa3.1□□□□□ -1.91
TRAV28-201ENST00000557548 TPRG1Q6ZUI0 275 aa3.1□□□□□ -1.91
TRAV28-201ENST00000557548 C11orf57Q6ZUT1 292 aaPredicted RBP3.1□□□□□ -1.91
TRAV28-201ENST00000557548 SHFQ7M4L6 423 aa3.1□□□□□ -1.91
TRAV28-201ENST00000557548 IRF2BP2Q7Z5L9 587 aa3.1□□□□□ -1.91
TRAV28-201ENST00000557548 PATL1Q86TB9 770 aaKnown RBP3.1□□□□□ -1.91
TRAV28-201ENST00000557548 PALB2Q86YC2 1186 aa3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms