RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	IRGC	Q6NXR0	463 aa		12.45	□□□□□ -0.42
SHMT2-223	ENST00000556689	ABRAXAS1	Q6UWZ7	409 aa		12.45	□□□□□ -0.42
SHMT2-223	ENST00000556689	APTX	Q7Z2E3	356 aa	Known RBP	12.45	□□□□□ -0.42
SHMT2-223	ENST00000556689	ADGRG6	Q86SQ4	1221 aa		12.45	□□□□□ -0.42
SHMT2-223	ENST00000556689	BPHL	Q86WA6	291 aa	Predicted RBP	12.45	□□□□□ -0.42
SHMT2-223	ENST00000556689	RBM12B	Q8IXT5	1001 aa	Known RBP	12.45	□□□□□ -0.42
SHMT2-223	ENST00000556689	FATE1	Q969F0	183 aa		12.45	□□□□□ -0.42
SHMT2-223	ENST00000556689	TSGA13	Q96PP4	275 aa		12.45	□□□□□ -0.42
SHMT2-223	ENST00000556689	ADGRE3	Q9BY15	652 aa		12.45	□□□□□ -0.42
SHMT2-223	ENST00000556689	RAB33B	Q9H082	229 aa		12.45	□□□□□ -0.42
SHMT2-223	ENST00000556689	BRD8	Q9H0E9	1235 aa		12.45	□□□□□ -0.42
SHMT2-223	ENST00000556689	SLC40A1	Q9NP59	571 aa		12.45	□□□□□ -0.42
SHMT2-223	ENST00000556689	ACSS2	Q9NR19	701 aa		12.45	□□□□□ -0.42
SHMT2-223	ENST00000556689	AIPL1	Q9NZN9	384 aa		12.45	□□□□□ -0.42
SHMT2-223	ENST00000556689	RARRES3	Q9UL19	164 aa		12.45	□□□□□ -0.42
SHMT2-223	ENST00000556689	DNAJC16	Q9Y2G8	782 aa		12.45	□□□□□ -0.42
SHMT2-223	ENST00000556689	PCDHGA9	Q9Y5G4	932 aa	Known RBP	12.45	□□□□□ -0.42
SHMT2-223	ENST00000556689	NOTCH2	Q04721	2471 aa		12.44	□□□□□ -0.42
SHMT2-223	ENST00000556689	LRRC53	A6NM62	1247 aa		12.44	□□□□□ -0.42
SHMT2-223	ENST00000556689	TIAF1	O95411	115 aa		12.44	□□□□□ -0.42
SHMT2-223	ENST00000556689	RPL10	P27635	214 aa	Known RBP	12.44	□□□□□ -0.42
SHMT2-223	ENST00000556689	CAPZB	P47756	277 aa		12.44	□□□□□ -0.42
SHMT2-223	ENST00000556689	PDE1B	Q01064	536 aa		12.44	□□□□□ -0.42
SHMT2-223	ENST00000556689	PAFAH1B3	Q15102	231 aa	Known RBP	12.44	□□□□□ -0.42
SHMT2-223	ENST00000556689	ZNF569	Q5MCW4	686 aa		12.44	□□□□□ -0.42
SHMT2-223	ENST00000556689	PWWP2B	Q6NUJ5	590 aa		12.44	□□□□□ -0.42
SHMT2-223	ENST00000556689	CRTC3	Q6UUV7	619 aa		12.44	□□□□□ -0.42
SHMT2-223	ENST00000556689	WASH2P	Q6VEQ5	465 aa		12.44	□□□□□ -0.42
SHMT2-223	ENST00000556689	SYVN1	Q86TM6	617 aa		12.44	□□□□□ -0.42
SHMT2-223	ENST00000556689	LRRTM4	Q86VH4	590 aa		12.44	□□□□□ -0.42
SHMT2-223	ENST00000556689	SIDT2	Q8NBJ9	832 aa	Known RBP	12.44	□□□□□ -0.42
SHMT2-223	ENST00000556689	UBXN4	Q92575	508 aa		12.44	□□□□□ -0.42
SHMT2-223	ENST00000556689	RSC1A1	Q92681	617 aa		12.44	□□□□□ -0.42
SHMT2-223	ENST00000556689	GLYATL1	Q969I3	302 aa		12.44	□□□□□ -0.42
SHMT2-223	ENST00000556689	CXorf40B	Q96DE9	158 aa		12.44	□□□□□ -0.42
SHMT2-223	ENST00000556689	ZSCAN5A	Q9BUG6	496 aa		12.44	□□□□□ -0.42
SHMT2-223	ENST00000556689	NAT10	Q9H0A0	1025 aa	Known RBP	12.44	□□□□□ -0.42
SHMT2-223	ENST00000556689	ING2	Q9H160	280 aa		12.44	□□□□□ -0.42
SHMT2-223	ENST00000556689	ISCU	Q9H1K1	167 aa		12.44	□□□□□ -0.42
SHMT2-223	ENST00000556689	AKIRIN1	Q9H9L7	192 aa	Predicted RBP	12.44	□□□□□ -0.42
SHMT2-223	ENST00000556689	ZFYVE1	Q9HBF4	777 aa		12.44	□□□□□ -0.42
SHMT2-223	ENST00000556689	MLXIPL	Q9NP71	852 aa		12.44	□□□□□ -0.42
SHMT2-223	ENST00000556689	CASS4	Q9NQ75	786 aa		12.44	□□□□□ -0.42
SHMT2-223	ENST00000556689	WASH6P	Q9NQA3	447 aa		12.44	□□□□□ -0.42
SHMT2-223	ENST00000556689	SEMA5B	Q9P283	1151 aa		12.44	□□□□□ -0.42
SHMT2-223	ENST00000556689	IP6K2	Q9UHH9	426 aa		12.44	□□□□□ -0.42
SHMT2-223	ENST00000556689	FARSA	Q9Y285	508 aa	Known RBP	12.44	□□□□□ -0.42
SHMT2-223	ENST00000556689	ICE1	Q9Y2F5	2266 aa		12.44	□□□□□ -0.42
SHMT2-223	ENST00000556689	USP9X	Q93008	2570 aa	Predicted RBP	12.43	□□□□□ -0.42
SHMT2-223	ENST00000556689	IGHV5-51	A0A0C4DH38	117 aa		12.43	□□□□□ -0.42
SHMT2-223	ENST00000556689		A1L4Q6	167 aa		12.43	□□□□□ -0.42
SHMT2-223	ENST00000556689	OR52A4P	A6NMU1	304 aa		12.43	□□□□□ -0.42
SHMT2-223	ENST00000556689	VEGFD	O43915	354 aa		12.43	□□□□□ -0.42
SHMT2-223	ENST00000556689	MFSD11	O43934	449 aa		12.43	□□□□□ -0.42
SHMT2-223	ENST00000556689	SORBS2	O94875	1100 aa	Known RBP	12.43	□□□□□ -0.42
SHMT2-223	ENST00000556689	CDK14	O94921	469 aa		12.43	□□□□□ -0.42
SHMT2-223	ENST00000556689	HLA-DQB2	P05538	268 aa		12.43	□□□□□ -0.42
SHMT2-223	ENST00000556689	CD48	P09326	243 aa		12.43	□□□□□ -0.42
SHMT2-223	ENST00000556689	BRAF	P15056	766 aa		12.43	□□□□□ -0.42
SHMT2-223	ENST00000556689	FOLR1	P15328	257 aa		12.43	□□□□□ -0.42
SHMT2-223	ENST00000556689	IDS	P22304	550 aa		12.43	□□□□□ -0.42
SHMT2-223	ENST00000556689	PRKCI	P41743	596 aa		12.43	□□□□□ -0.42
SHMT2-223	ENST00000556689	SLC25A11	Q02978	314 aa	Known RBP	12.43	□□□□□ -0.42
SHMT2-223	ENST00000556689	ACY1	Q03154	408 aa		12.43	□□□□□ -0.42
SHMT2-223	ENST00000556689	KLHL30	Q0D2K2	578 aa		12.43	□□□□□ -0.42
SHMT2-223	ENST00000556689	TUBB3	Q13509	450 aa		12.43	□□□□□ -0.42
SHMT2-223	ENST00000556689	GPR18	Q14330	331 aa		12.43	□□□□□ -0.42
SHMT2-223	ENST00000556689	INPP5J	Q15735	1006 aa	Predicted RBP	12.43	□□□□□ -0.42
SHMT2-223	ENST00000556689	STX1A	Q16623	288 aa		12.43	□□□□□ -0.42
SHMT2-223	ENST00000556689	EIF2S3L	Q2VIR3	472 aa	Known RBP	12.43	□□□□□ -0.42
SHMT2-223	ENST00000556689	PLA2G4E	Q3MJ16	856 aa		12.43	□□□□□ -0.42
SHMT2-223	ENST00000556689	AGAP9	Q5VTM2	703 aa		12.43	□□□□□ -0.42
SHMT2-223	ENST00000556689	PAPD7	Q5XG87	772 aa	Known RBP	12.43	□□□□□ -0.42
SHMT2-223	ENST00000556689	ALS2CL	Q60I27	953 aa		12.43	□□□□□ -0.42
SHMT2-223	ENST00000556689	PDPK2P	Q6A1A2	396 aa		12.43	□□□□□ -0.42
SHMT2-223	ENST00000556689	FAM199X	Q6PEV8	388 aa	Predicted RBP	12.43	□□□□□ -0.42
SHMT2-223	ENST00000556689	TRAM1L1	Q8N609	369 aa		12.43	□□□□□ -0.42
SHMT2-223	ENST00000556689	NIPA2	Q8N8Q9	360 aa		12.43	□□□□□ -0.42
SHMT2-223	ENST00000556689	GPR26	Q8NDV2	337 aa		12.43	□□□□□ -0.42
SHMT2-223	ENST00000556689	EID2B	Q96D98	161 aa		12.43	□□□□□ -0.42
SHMT2-223	ENST00000556689	SLC41A2	Q96JW4	573 aa		12.43	□□□□□ -0.42
SHMT2-223	ENST00000556689	RUFY1	Q96T51	708 aa		12.43	□□□□□ -0.42
SHMT2-223	ENST00000556689	TIMM29	Q9BSF4	260 aa		12.43	□□□□□ -0.42
SHMT2-223	ENST00000556689	RAD18	Q9NS91	495 aa		12.43	□□□□□ -0.42
SHMT2-223	ENST00000556689	ANO10	Q9NW15	660 aa		12.43	□□□□□ -0.42
SHMT2-223	ENST00000556689	DTL	Q9NZJ0	730 aa		12.43	□□□□□ -0.42
SHMT2-223	ENST00000556689	TMEM63C	Q9P1W3	806 aa		12.43	□□□□□ -0.42
SHMT2-223	ENST00000556689	ZNF451	Q9Y4E5	1061 aa		12.43	□□□□□ -0.42
SHMT2-223	ENST00000556689	SYCE3	A1L190	88 aa		12.42	□□□□□ -0.42
SHMT2-223	ENST00000556689	ARGFX	A6NJG6	315 aa		12.42	□□□□□ -0.42
SHMT2-223	ENST00000556689	TCP11X1	B4DZS4	312 aa		12.42	□□□□□ -0.42
SHMT2-223	ENST00000556689	RNF224	P0DH78	156 aa		12.42	□□□□□ -0.42
SHMT2-223	ENST00000556689	VCL	P18206	1134 aa		12.42	□□□□□ -0.42
SHMT2-223	ENST00000556689	MX2	P20592	715 aa		12.42	□□□□□ -0.42
SHMT2-223	ENST00000556689	LPO	P22079	712 aa	Predicted RBP	12.42	□□□□□ -0.42
SHMT2-223	ENST00000556689	VARS	P26640	1264 aa	Known RBP	12.42	□□□□□ -0.42
SHMT2-223	ENST00000556689	CD86	P42081	329 aa		12.42	□□□□□ -0.42
SHMT2-223	ENST00000556689	SSR1	P43307	286 aa	Known RBP	12.42	□□□□□ -0.42
SHMT2-223	ENST00000556689	ARL4D	P49703	201 aa		12.42	□□□□□ -0.42
SHMT2-223	ENST00000556689	DRG2	P55039	364 aa	Known RBP	12.42	□□□□□ -0.42

Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms