RNA–Protein interactions for RNA: ENST00000556315.5

ATXN3-239, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 924 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-239ENST00000556315 ZW10O43264 779 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 SMAD6O43541 496 aaKnown RBP4.87□□□□□ -1.63
ATXN3-239ENST00000556315 KLRC4O43908 158 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 CUTAO60888 179 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 KRT38O76015 456 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 DDAH2O95865 285 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 IGLV3-25P01717 112 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 SYT1P21579 422 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 TBXAS1P24557 533 aaPredicted RBP4.87□□□□□ -1.63
ATXN3-239ENST00000556315 ELAVL4P26378 380 aaKnown RBP4.87□□□□□ -1.63
ATXN3-239ENST00000556315 MC4RP32245 332 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 CCR1P32246 355 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 ACADSBP45954 432 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 RPL34P49207 117 aaKnown RBP4.87□□□□□ -1.63
ATXN3-239ENST00000556315 CDKN1CP49918 316 aaPredicted RBP4.87□□□□□ -1.63
ATXN3-239ENST00000556315 MXI1P50539 228 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 PEX5P50542 639 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 HK3P52790 923 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 CDH4P55283 916 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 YWHAZP63104 245 aaKnown RBP4.87□□□□□ -1.63
ATXN3-239ENST00000556315 CDK17Q00537 523 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 ALDH6A1Q02252 535 aaKnown RBP4.87□□□□□ -1.63
ATXN3-239ENST00000556315 ROM1Q03395 351 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 EIF4EBP2Q13542 120 aaPredicted RBP4.87□□□□□ -1.63
ATXN3-239ENST00000556315 ARHGEF7Q14155 803 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 CLPPQ16740 277 aaPredicted RBP4.87□□□□□ -1.63
ATXN3-239ENST00000556315 C5orf22Q49AR2 442 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 LACTB2Q53H82 288 aaPredicted RBP4.87□□□□□ -1.63
ATXN3-239ENST00000556315 CARD16Q5EG05 197 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 PHF19Q5T6S3 580 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 TIGD7Q6NT04 549 aaPredicted RBP4.87□□□□□ -1.63
ATXN3-239ENST00000556315 RETSATQ6NUM9 610 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 SHC4Q6S5L8 630 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 MACC1Q6ZN28 852 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 DPY19L3Q6ZPD9 716 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 TAC4Q86UU9 113 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 STK32CQ86UX6 486 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 CIR1Q86X95 450 aaPredicted RBP4.87□□□□□ -1.63
ATXN3-239ENST00000556315 CEP57L1Q8IYX8 460 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 TEX19Q8NA77 164 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 GPR156Q8NFN8 814 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 OR52K2Q8NGK3 314 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 CLEC4CQ8WTT0 213 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 SSC4DQ8WTU2 575 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 APOBEC4Q8WW27 367 aaKnown RBP4.87□□□□□ -1.63
ATXN3-239ENST00000556315 JPH3Q8WXH2 748 aaPredicted RBP4.87□□□□□ -1.63
ATXN3-239ENST00000556315 TFAP2BQ92481 460 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 DVL3Q92997 716 aaPredicted RBP4.87□□□□□ -1.63
ATXN3-239ENST00000556315 FAM149B1Q96BN6 582 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 FOXRED1Q96CU9 486 aaPredicted RBP4.87□□□□□ -1.63
ATXN3-239ENST00000556315 ARHGEF26Q96DR7 871 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 PAGE5Q96GU1 130 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 SLC45A3Q96JT2 553 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 MED15Q96RN5 788 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 HAPLN3Q96S86 360 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 HEPHQ9BQS7 1158 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 EFHD1Q9BUP0 239 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 C1QTNF7Q9BXJ2 289 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 ASPSCR1Q9BZE9 553 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 ZMAT4Q9H898 229 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 POPDC2Q9HBU9 364 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 COQ4Q9Y3A0 265 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 RNF215Q9Y6U7 377 aa4.87□□□□□ -1.63
ATXN3-239ENST00000556315 SPTAN1Q13813 2472 aaKnown RBP4.86□□□□□ -1.63
ATXN3-239ENST00000556315 TEX15Q9BXT5 2789 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 C16orf96A6NNT2 1141 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 M0QYV0 167 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 DDX3XO00571 662 aaKnown RBP eCLIP4.86□□□□□ -1.63
ATXN3-239ENST00000556315 B4GAT1O43505 415 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 SNAP91O60641 907 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 ZNF821O75541 412 aaPredicted RBP4.86□□□□□ -1.63
ATXN3-239ENST00000556315 TM7SF2O76062 418 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 CNTN5O94779 1100 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 ENDOD1O94919 500 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 CPNE6O95741 557 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 MPIG6BO95866 241 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 PRLP01236 227 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 TNFP01375 233 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 MYL1P05976 194 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 RHOCP08134 193 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 KRT7P08729 469 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 FGF3P11487 239 aaPredicted RBP4.86□□□□□ -1.63
ATXN3-239ENST00000556315 CCL4P13236 92 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 LIFP15018 202 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 ZNF28P17035 718 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 RRM1P23921 792 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 HTR1BP28222 390 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 UGT1A3P35503 534 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 GLRBP48167 497 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 DNA2P51530 1060 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 MLLT10P55197 1068 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 B4GALNT1Q00973 533 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 MC1RQ01726 317 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 CUL4AQ13619 759 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 C16orf72Q14CZ0 275 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 CERCAMQ5T4B2 595 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 CAPRIN2Q6IMN6 1127 aaKnown RBP4.86□□□□□ -1.63
ATXN3-239ENST00000556315 TMEM270Q6UE05 265 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 FRMD7Q6ZUT3 714 aa4.86□□□□□ -1.63
ATXN3-239ENST00000556315 CXXC5Q7LFL8 322 aaKnown RBP4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms