RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 TMEM30BQ3MIR4 351 aa3.57□□□□□ -1.84
SCFD1-216ENST00000555550 ZNF805Q5CZA5 627 aa3.57□□□□□ -1.84
SCFD1-216ENST00000555550 WDR38Q5JTN6 314 aa3.57□□□□□ -1.84
SCFD1-216ENST00000555550 PIWIL4Q7Z3Z4 852 aaKnown RBP3.57□□□□□ -1.84
SCFD1-216ENST00000555550 CPLX4Q7Z7G2 160 aa3.57□□□□□ -1.84
SCFD1-216ENST00000555550 CCDC190Q86UF4 302 aa3.57□□□□□ -1.84
SCFD1-216ENST00000555550 LONP2Q86WA8 852 aa3.57□□□□□ -1.84
SCFD1-216ENST00000555550 SMC5Q8IY18 1101 aa3.57□□□□□ -1.84
SCFD1-216ENST00000555550 EMC1Q8N766 993 aa3.57□□□□□ -1.84
SCFD1-216ENST00000555550 FRMD1Q8N878 549 aa3.57□□□□□ -1.84
SCFD1-216ENST00000555550 KCNG4Q8TDN1 519 aa3.57□□□□□ -1.84
SCFD1-216ENST00000555550 RRP7BPQ9NSQ0 103 aa3.57□□□□□ -1.84
SCFD1-216ENST00000555550 C9orf78Q9NZ63 289 aaPredicted RBP3.57□□□□□ -1.84
SCFD1-216ENST00000555550 KLHL9Q9P2J3 617 aa3.57□□□□□ -1.84
SCFD1-216ENST00000555550 UBA2Q9UBT2 640 aaPredicted RBP3.57□□□□□ -1.84
SCFD1-216ENST00000555550 LIMA1Q9UHB6 759 aaKnown RBP3.57□□□□□ -1.84
SCFD1-216ENST00000555550 KCNE2Q9Y6J6 123 aa3.57□□□□□ -1.84
SCFD1-216ENST00000555550 PDE9AO76083 593 aa3.56□□□□□ -1.84
SCFD1-216ENST00000555550 MCCP23508 829 aa3.56□□□□□ -1.84
SCFD1-216ENST00000555550 KRT9P35527 623 aa3.56□□□□□ -1.84
SCFD1-216ENST00000555550 BSGP35613 385 aa3.56□□□□□ -1.84
SCFD1-216ENST00000555550 DCTP40126 519 aa3.56□□□□□ -1.84
SCFD1-216ENST00000555550 DRG2P55039 364 aaKnown RBP3.56□□□□□ -1.84
SCFD1-216ENST00000555550 MRPS34P82930 218 aaKnown RBP3.56□□□□□ -1.84
SCFD1-216ENST00000555550 MBTD1Q05BQ5 628 aa3.56□□□□□ -1.84
SCFD1-216ENST00000555550 RUNX1T1Q06455 604 aa3.56□□□□□ -1.84
SCFD1-216ENST00000555550 LRMPQ12912 555 aa3.56□□□□□ -1.84
SCFD1-216ENST00000555550 TBCEQ15813 527 aaPredicted RBP3.56□□□□□ -1.84
SCFD1-216ENST00000555550 NSUN5P2Q63ZY6 315 aa3.56□□□□□ -1.84
SCFD1-216ENST00000555550 CYP20A1Q6UW02 462 aa3.56□□□□□ -1.84
SCFD1-216ENST00000555550 ZNF497Q6ZNH5 498 aa3.56□□□□□ -1.84
SCFD1-216ENST00000555550 SEPT14Q6ZU15 432 aa3.56□□□□□ -1.84
SCFD1-216ENST00000555550 PM20D2Q8IYS1 436 aa3.56□□□□□ -1.84
SCFD1-216ENST00000555550 GBGT1Q8N5D6 347 aa3.56□□□□□ -1.84
SCFD1-216ENST00000555550 SLC5A8Q8N695 610 aa3.56□□□□□ -1.84
SCFD1-216ENST00000555550 RBM15BQ8NDT2 890 aaKnown RBP3.56□□□□□ -1.84
SCFD1-216ENST00000555550 OR8K5Q8NH50 307 aa3.56□□□□□ -1.84
SCFD1-216ENST00000555550 SGCDQ92629 289 aa3.56□□□□□ -1.84
SCFD1-216ENST00000555550 TMEM39BQ9GZU3 492 aa3.56□□□□□ -1.84
SCFD1-216ENST00000555550 INTS10Q9NVR2 710 aaKnown RBP3.56□□□□□ -1.84
SCFD1-216ENST00000555550 IRAK4Q9NWZ3 460 aa3.56□□□□□ -1.84
SCFD1-216ENST00000555550 ZNF624Q9P2J8 865 aaPredicted RBP3.56□□□□□ -1.84
SCFD1-216ENST00000555550 FBXW11Q9UKB1 542 aa3.56□□□□□ -1.84
SCFD1-216ENST00000555550 KCNK7Q9Y2U2 307 aa3.56□□□□□ -1.84
SCFD1-216ENST00000555550 A0A1W2PP11 408 aa3.55□□□□□ -1.84
SCFD1-216ENST00000555550 C15orf62A8K5M9 175 aa3.55□□□□□ -1.84
SCFD1-216ENST00000555550 ZBTB43O43298 467 aa3.55□□□□□ -1.84
SCFD1-216ENST00000555550 RTN3O95197 1032 aaPredicted RBP3.55□□□□□ -1.84
SCFD1-216ENST00000555550 ICAM1P05362 532 aa3.55□□□□□ -1.84
SCFD1-216ENST00000555550 PATE4P0C8F1 98 aa3.55□□□□□ -1.84
SCFD1-216ENST00000555550 HSPA1AP0DMV8 641 aaKnown RBP3.55□□□□□ -1.84
SCFD1-216ENST00000555550 HSPA1BP0DMV9 641 aaKnown RBP3.55□□□□□ -1.84
SCFD1-216ENST00000555550 CD81P60033 236 aa3.55□□□□□ -1.84
SCFD1-216ENST00000555550 TFAP4Q01664 338 aa3.55□□□□□ -1.84
SCFD1-216ENST00000555550 PPIGQ13427 754 aaKnown RBP eCLIP3.55□□□□□ -1.84
SCFD1-216ENST00000555550 ADIPOQQ15848 244 aa3.55□□□□□ -1.84
SCFD1-216ENST00000555550 PACS1Q6VY07 963 aa3.55□□□□□ -1.84
SCFD1-216ENST00000555550 ZKSCAN4Q969J2 545 aaPredicted RBP3.55□□□□□ -1.84
SCFD1-216ENST00000555550 LGALS12Q96DT0 336 aa3.55□□□□□ -1.84
SCFD1-216ENST00000555550 WDFY2Q96P53 400 aa3.55□□□□□ -1.84
SCFD1-216ENST00000555550 LITAFQ99732 161 aa3.55□□□□□ -1.84
SCFD1-216ENST00000555550 MAGIXQ9H6Y5 334 aa3.55□□□□□ -1.84
SCFD1-216ENST00000555550 POLR1BQ9H9Y6 1135 aa3.55□□□□□ -1.84
SCFD1-216ENST00000555550 SLC52A3Q9NQ40 469 aa3.55□□□□□ -1.84
SCFD1-216ENST00000555550 SMC4Q9NTJ3 1288 aa3.55□□□□□ -1.84
SCFD1-216ENST00000555550 SLC38A7Q9NVC3 462 aa3.55□□□□□ -1.84
SCFD1-216ENST00000555550 C2CD2Q9Y426 696 aa3.55□□□□□ -1.84
SCFD1-216ENST00000555550 SMCHD1A6NHR9 2005 aa3.54□□□□□ -1.84
SCFD1-216ENST00000555550 PRAG1Q86YV5 1406 aa3.54□□□□□ -1.84
SCFD1-216ENST00000555550 A0A0G2JNG1 304 aa3.54□□□□□ -1.84
SCFD1-216ENST00000555550 A0A1B0GVC2 190 aa3.54□□□□□ -1.84
SCFD1-216ENST00000555550 A0A1W2PPI3 338 aa3.54□□□□□ -1.84
SCFD1-216ENST00000555550 DUXAA6NLW8 204 aa3.54□□□□□ -1.84
SCFD1-216ENST00000555550 HHLA1C9JL84 531 aa3.54□□□□□ -1.84
SCFD1-216ENST00000555550 ZNF500O60304 480 aaPredicted RBP3.54□□□□□ -1.84
SCFD1-216ENST00000555550 SYNCRIPO60506 623 aaKnown RBP3.54□□□□□ -1.84
SCFD1-216ENST00000555550 CCNDBP1O95273 360 aa3.54□□□□□ -1.84
SCFD1-216ENST00000555550 BMP10O95393 424 aa3.54□□□□□ -1.84
SCFD1-216ENST00000555550 TFAP2AP05549 437 aa3.54□□□□□ -1.84
SCFD1-216ENST00000555550 GNAZP19086 355 aa3.54□□□□□ -1.84
SCFD1-216ENST00000555550 NFKBIAP25963 317 aa3.54□□□□□ -1.84
SCFD1-216ENST00000555550 RGS2P41220 211 aa3.54□□□□□ -1.84
SCFD1-216ENST00000555550 GALCP54803 685 aa3.54□□□□□ -1.84
SCFD1-216ENST00000555550 TAS2R40P59535 323 aa3.54□□□□□ -1.84
SCFD1-216ENST00000555550 RPS3AP61247 264 aaKnown RBP3.54□□□□□ -1.84
SCFD1-216ENST00000555550 KIR2DS3Q14952 304 aa3.54□□□□□ -1.84
SCFD1-216ENST00000555550 KIR2DS5Q14953 304 aa3.54□□□□□ -1.84
SCFD1-216ENST00000555550 TSTQ16762 297 aaKnown RBP3.54□□□□□ -1.84
SCFD1-216ENST00000555550 ZSCAN23Q3MJ62 389 aa3.54□□□□□ -1.84
SCFD1-216ENST00000555550 TECRLQ5HYJ1 363 aa3.54□□□□□ -1.84
SCFD1-216ENST00000555550 LRIF1Q5T3J3 769 aa3.54□□□□□ -1.84
SCFD1-216ENST00000555550 LCE3EQ5T5B0 92 aa3.54□□□□□ -1.84
SCFD1-216ENST00000555550 GORABQ5T7V8 394 aa3.54□□□□□ -1.84
SCFD1-216ENST00000555550 ARHGAP17Q68EM7 881 aa3.54□□□□□ -1.84
SCFD1-216ENST00000555550 PLXDC2Q6UX71 529 aa3.54□□□□□ -1.84
SCFD1-216ENST00000555550 RBMS3Q6XE24 437 aaKnown RBP3.54□□□□□ -1.84
SCFD1-216ENST00000555550 C15orf39Q6ZRI6 1047 aa3.54□□□□□ -1.84
SCFD1-216ENST00000555550 TRPT1Q86TN4 253 aaKnown RBP3.54□□□□□ -1.84
SCFD1-216ENST00000555550 RNF168Q8IYW5 571 aaPredicted RBP3.54□□□□□ -1.84
SCFD1-216ENST00000555550 RASGEF1CQ8N431 466 aa3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms