RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 LCHNA4D1U4 455 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 MROH6A6NGR9 719 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 H3BNC9 293 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 KPNA3O00505 521 aaPredicted RBP5.53□□□□□ -1.52
LIMA1-215ENST00000552823 PRMT5O14744 637 aaPredicted RBP5.53□□□□□ -1.52
LIMA1-215ENST00000552823 HOXA2O43364 376 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 FKBP6O75344 327 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 CD160O95971 181 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 CHEK2O96017 543 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 SOD2P04179 222 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 COL6A2P12110 1019 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 LBPP18428 481 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 FDXRP22570 491 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 ERVFC1P60507 584 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 HERVK_113P63132 956 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 MSLNQ13421 630 aaPredicted RBP5.53□□□□□ -1.52
LIMA1-215ENST00000552823 IRF5Q13568 498 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 PTGR1Q14914 329 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 TEAD2Q15562 447 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 PAGE3Q5JUK9 113 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 CTSL3PQ5NE16 218 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 FAM180BQ6P0A1 224 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 AFTPHQ6ULP2 937 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 TMC5Q6UXY8 1006 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 DPY19L3Q6ZPD9 716 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 KIAA0408Q6ZU52 694 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 LSRQ86X29 649 aaPredicted RBP5.53□□□□□ -1.52
LIMA1-215ENST00000552823 LRRC49Q8IUZ0 686 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 SLC22A9Q8IVM8 553 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 FUNDC1Q8IVP5 155 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 HERC6Q8IVU3 1022 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 CNTN4Q8IWV2 1026 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 CYGBQ8WWM9 190 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 TBRG4Q969Z0 631 aaKnown RBP eCLIP5.53□□□□□ -1.52
LIMA1-215ENST00000552823 UBXN10Q96LJ8 280 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 TSSK3Q96PN8 268 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 SLC29A1Q99808 456 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 TCF25Q9BQ70 676 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 WRAP53Q9BUR4 548 aaKnown RBP5.53□□□□□ -1.52
LIMA1-215ENST00000552823 THUMPD3Q9BV44 507 aaKnown RBP5.53□□□□□ -1.52
LIMA1-215ENST00000552823 SPATA16Q9BXB7 569 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 ERVK-6Q9BXR3 956 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 SLC46A2Q9BY10 475 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 GRIP2Q9C0E4 1043 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 MMADHCQ9H3L0 296 aaPredicted RBP5.53□□□□□ -1.52
LIMA1-215ENST00000552823 IPPKQ9H8X2 491 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 EPS15L1Q9UBC2 864 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 STK39Q9UEW8 545 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 SUN2Q9UH99 717 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 POLG2Q9UHN1 485 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 ITM2BQ9Y287 266 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 COQ6Q9Y2Z9 468 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 ARID1BQ8NFD5 2236 aaPredicted RBP5.53□□□□□ -1.52
LIMA1-215ENST00000552823 hCG_2014768A0A024R1R8 64 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 IGLV3-10A0A075B6K4 115 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 ILVBLA1L0T0 632 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 PABPN1LA6NDY0 278 aaKnown RBP5.53□□□□□ -1.52
LIMA1-215ENST00000552823 WASH3PC4AMC7 463 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 NPHS1O60500 1241 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 SEC22BO75396 215 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 FGF18O76093 207 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 CCR2P41597 374 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 RECQLP46063 649 aaPredicted RBP5.53□□□□□ -1.52
LIMA1-215ENST00000552823 CCNG1P51959 295 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 KCNK10P57789 538 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 CDKL1Q00532 357 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 PDK3Q15120 406 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 TAF1AQ15573 450 aaPredicted RBP5.53□□□□□ -1.52
LIMA1-215ENST00000552823 ZNF423Q2M1K9 1284 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 TBCELQ5QJ74 424 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 RETSATQ6NUM9 610 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 PGM2L1Q6PCE3 622 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 GPRIN3Q6ZVF9 776 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 CHST15Q7LFX5 561 aaPredicted RBP5.53□□□□□ -1.52
LIMA1-215ENST00000552823 GALNT10Q86SR1 603 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 ZSWIM9Q86XI8 627 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 TTC30BQ8N4P2 665 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 LILRA3Q8N6C8 439 aaPredicted RBP5.53□□□□□ -1.52
LIMA1-215ENST00000552823 KREMEN2Q8NCW0 462 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 FBXO30Q8TB52 745 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 RDH11Q8TC12 318 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 PNPT1Q8TCS8 783 aaKnown RBP5.53□□□□□ -1.52
LIMA1-215ENST00000552823 FIG4Q92562 907 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 NCLNQ969V3 563 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 FUBP1Q96AE4 644 aaKnown RBP5.53□□□□□ -1.52
LIMA1-215ENST00000552823 VPS50Q96JG6 964 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 TSC22D3Q99576 134 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 MYOCQ99972 504 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 ACAT2Q9BWD1 397 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 KLF16Q9BXK1 252 aaPredicted RBP5.53□□□□□ -1.52
LIMA1-215ENST00000552823 IGFLR1Q9H665 355 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 ARNT2Q9HBZ2 717 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 NIPSNAP3AQ9UFN0 247 aaPredicted RBP5.53□□□□□ -1.52
LIMA1-215ENST00000552823 SORCS3Q9UPU3 1222 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 PHF24Q9UPV7 400 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 MED16Q9Y2X0 877 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 RNF11Q9Y3C5 154 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 AP4S1Q9Y587 144 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 MAGED1Q9Y5V3 778 aaPredicted RBP5.53□□□□□ -1.52
LIMA1-215ENST00000552823 AP4B1Q9Y6B7 739 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms