RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 LDB1Q86U70 411 aaPredicted RBP4.07□□□□□ -1.76
VPS29-205ENST00000548539 NRROSQ86YC3 692 aa4.07□□□□□ -1.76
VPS29-205ENST00000548539 CEP97Q8IW35 865 aa4.07□□□□□ -1.76
VPS29-205ENST00000548539 MCEMP1Q8IX19 187 aa4.07□□□□□ -1.76
VPS29-205ENST00000548539 PGBD5Q8N414 524 aa4.07□□□□□ -1.76
VPS29-205ENST00000548539 SLC44A1Q8WWI5 657 aa4.07□□□□□ -1.76
VPS29-205ENST00000548539 VPS33AQ96AX1 596 aa4.07□□□□□ -1.76
VPS29-205ENST00000548539 MTERF1Q99551 399 aaKnown RBP4.07□□□□□ -1.76
VPS29-205ENST00000548539 MMTAG2Q9BU76 263 aaKnown RBP4.07□□□□□ -1.76
VPS29-205ENST00000548539 MRPL1Q9BYD6 325 aaKnown RBP4.07□□□□□ -1.76
VPS29-205ENST00000548539 SLCO5A1Q9H2Y9 848 aa4.07□□□□□ -1.76
VPS29-205ENST00000548539 MAGIXQ9H6Y5 334 aa4.07□□□□□ -1.76
VPS29-205ENST00000548539 CHMP1AQ9HD42 196 aaPredicted RBP4.07□□□□□ -1.76
VPS29-205ENST00000548539 HIF1ANQ9NWT6 349 aa4.07□□□□□ -1.76
VPS29-205ENST00000548539 UBA2Q9UBT2 640 aaPredicted RBP4.07□□□□□ -1.76
VPS29-205ENST00000548539 TSPYL4Q9UJ04 414 aa4.07□□□□□ -1.76
VPS29-205ENST00000548539 LOXL2Q9Y4K0 774 aa4.07□□□□□ -1.76
VPS29-205ENST00000548539 ZNF644Q9H582 1327 aaPredicted RBP4.06□□□□□ -1.76
VPS29-205ENST00000548539 TMEM8BA6NDV4 472 aa4.06□□□□□ -1.76
VPS29-205ENST00000548539 TMEM189-UBE2V1I3L0A0 370 aa4.06□□□□□ -1.76
VPS29-205ENST00000548539 J3QR06 171 aa4.06□□□□□ -1.76
VPS29-205ENST00000548539 ANKRD28O15084 1053 aa4.06□□□□□ -1.76
VPS29-205ENST00000548539 TBX10O75333 385 aa4.06□□□□□ -1.76
VPS29-205ENST00000548539 ZNF217O75362 1048 aa4.06□□□□□ -1.76
VPS29-205ENST00000548539 TADA2AO75478 443 aa4.06□□□□□ -1.76
VPS29-205ENST00000548539 TOMM40O96008 361 aa4.06□□□□□ -1.76
VPS29-205ENST00000548539 T-ENOLP0DO92 83 aa4.06□□□□□ -1.76
VPS29-205ENST00000548539 MYBL1P10243 752 aa4.06□□□□□ -1.76
VPS29-205ENST00000548539 HRH2P25021 359 aa4.06□□□□□ -1.76
VPS29-205ENST00000548539 CDC25AP30304 524 aa4.06□□□□□ -1.76
VPS29-205ENST00000548539 ARRB2P32121 409 aa4.06□□□□□ -1.76
VPS29-205ENST00000548539 CLDN20P56880 219 aa4.06□□□□□ -1.76
VPS29-205ENST00000548539 CD81P60033 236 aa4.06□□□□□ -1.76
VPS29-205ENST00000548539 BNC1Q01954 994 aa4.06□□□□□ -1.76
VPS29-205ENST00000548539 Q0VFX4 171 aa4.06□□□□□ -1.76
VPS29-205ENST00000548539 TRAF3Q13114 568 aa4.06□□□□□ -1.76
VPS29-205ENST00000548539 UBE2V1Q13404 147 aa4.06□□□□□ -1.76
VPS29-205ENST00000548539 CAMK2DQ13557 499 aa4.06□□□□□ -1.76
VPS29-205ENST00000548539 SNTB1Q13884 538 aaKnown RBP4.06□□□□□ -1.76
VPS29-205ENST00000548539 DECR1Q16698 335 aa4.06□□□□□ -1.76
VPS29-205ENST00000548539 ATP13A5Q4VNC0 1218 aa4.06□□□□□ -1.76
VPS29-205ENST00000548539 TDRD12Q587J7 1177 aaKnown RBP4.06□□□□□ -1.76
VPS29-205ENST00000548539 XKR9Q5GH70 373 aa4.06□□□□□ -1.76
VPS29-205ENST00000548539 C6orf163Q5TEZ5 329 aa4.06□□□□□ -1.76
VPS29-205ENST00000548539 DAB2IPQ5VWQ8 1189 aa4.06□□□□□ -1.76
VPS29-205ENST00000548539 C18orf63Q68DL7 685 aa4.06□□□□□ -1.76
VPS29-205ENST00000548539 ZNF549Q6P9A3 640 aa4.06□□□□□ -1.76
VPS29-205ENST00000548539 TEX38Q6PEX7 206 aa4.06□□□□□ -1.76
VPS29-205ENST00000548539 GPR180Q86V85 440 aa4.06□□□□□ -1.76
VPS29-205ENST00000548539 ZNF34Q8IZ26 560 aa4.06□□□□□ -1.76
VPS29-205ENST00000548539 GUF1Q8N442 669 aaKnown RBP4.06□□□□□ -1.76
VPS29-205ENST00000548539 EMC1Q8N766 993 aa4.06□□□□□ -1.76
VPS29-205ENST00000548539 TDRD5Q8NAT2 981 aaKnown RBP4.06□□□□□ -1.76
VPS29-205ENST00000548539 RBM15BQ8NDT2 890 aaKnown RBP4.06□□□□□ -1.76
VPS29-205ENST00000548539 Q8NFD4 153 aa4.06□□□□□ -1.76
VPS29-205ENST00000548539 UTP15Q8TED0 518 aaKnown RBP4.06□□□□□ -1.76
VPS29-205ENST00000548539 ZFAND2BQ8WV99 257 aa4.06□□□□□ -1.76
VPS29-205ENST00000548539 TEKT4Q8WW24 435 aa4.06□□□□□ -1.76
VPS29-205ENST00000548539 TAAR8Q969N4 342 aa4.06□□□□□ -1.76
VPS29-205ENST00000548539 C3orf30Q96M34 536 aa4.06□□□□□ -1.76
VPS29-205ENST00000548539 SPATC1LQ9H0A9 340 aa4.06□□□□□ -1.76
VPS29-205ENST00000548539 PPIL3Q9H2H8 161 aaKnown RBP4.06□□□□□ -1.76
VPS29-205ENST00000548539 KCNK15Q9H427 330 aa4.06□□□□□ -1.76
VPS29-205ENST00000548539 LARSQ9P2J5 1176 aaKnown RBP4.06□□□□□ -1.76
VPS29-205ENST00000548539 ANAPC2Q9UJX6 822 aa4.06□□□□□ -1.76
VPS29-205ENST00000548539 FBXL2Q9UKC9 423 aa4.06□□□□□ -1.76
VPS29-205ENST00000548539 NOTCH4Q99466 2003 aa4.05□□□□□ -1.76
VPS29-205ENST00000548539 TRBC2A0A5B9 178 aa4.05□□□□□ -1.76
VPS29-205ENST00000548539 MAGEB17A8MXT2 336 aa4.05□□□□□ -1.76
VPS29-205ENST00000548539 FAM90A26D6RGX4 464 aa4.05□□□□□ -1.76
VPS29-205ENST00000548539 ZBTB43O43298 467 aa4.05□□□□□ -1.76
VPS29-205ENST00000548539 KCNJ13O60928 360 aa4.05□□□□□ -1.76
VPS29-205ENST00000548539 HSPA4LO95757 839 aa4.05□□□□□ -1.76
VPS29-205ENST00000548539 TGFB3P10600 412 aa4.05□□□□□ -1.76
VPS29-205ENST00000548539 VPREB1P12018 145 aa4.05□□□□□ -1.76
VPS29-205ENST00000548539 GJA1P17302 382 aa4.05□□□□□ -1.76
VPS29-205ENST00000548539 MC5RP33032 325 aa4.05□□□□□ -1.76
VPS29-205ENST00000548539 ARSEP51690 589 aa4.05□□□□□ -1.76
VPS29-205ENST00000548539 CLCNKAP51800 687 aa4.05□□□□□ -1.76
VPS29-205ENST00000548539 CDH13P55290 713 aa4.05□□□□□ -1.76
VPS29-205ENST00000548539 SEC61BP60468 96 aaKnown RBP4.05□□□□□ -1.76
VPS29-205ENST00000548539 ALCAMQ13740 583 aa4.05□□□□□ -1.76
VPS29-205ENST00000548539 PLCB4Q15147 1175 aa4.05□□□□□ -1.76
VPS29-205ENST00000548539 ALS2CLQ60I27 953 aa4.05□□□□□ -1.76
VPS29-205ENST00000548539 LCN10Q6JVE6 187 aa4.05□□□□□ -1.76
VPS29-205ENST00000548539 PAPD4Q6PIY7 484 aaKnown RBP4.05□□□□□ -1.76
VPS29-205ENST00000548539 INTS8Q75QN2 995 aaKnown RBP4.05□□□□□ -1.76
VPS29-205ENST00000548539 GALNT13Q8IUC8 556 aa4.05□□□□□ -1.76
VPS29-205ENST00000548539 ADHFE1Q8IWW8 467 aa4.05□□□□□ -1.76
VPS29-205ENST00000548539 CHERPQ8IWX8 916 aaKnown RBP4.05□□□□□ -1.76
VPS29-205ENST00000548539 TBC1D16Q8TBP0 767 aa4.05□□□□□ -1.76
VPS29-205ENST00000548539 WFIKKN2Q8TEU8 576 aa4.05□□□□□ -1.76
VPS29-205ENST00000548539 TMED6Q8WW62 240 aa4.05□□□□□ -1.76
VPS29-205ENST00000548539 RMDN1Q96DB5 314 aa4.05□□□□□ -1.76
VPS29-205ENST00000548539 MTBPQ96DY7 904 aa4.05□□□□□ -1.76
VPS29-205ENST00000548539 CAMK1GQ96NX5 476 aa4.05□□□□□ -1.76
VPS29-205ENST00000548539 GFI1Q99684 422 aa4.05□□□□□ -1.76
VPS29-205ENST00000548539 TMEM39BQ9GZU3 492 aa4.05□□□□□ -1.76
VPS29-205ENST00000548539 MRPL44Q9H9J2 332 aaKnown RBP4.05□□□□□ -1.76
VPS29-205ENST00000548539 MRGBPQ9NV56 204 aa4.05□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms